Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03147 and BACOVA_03148 overlap by 11 nucleotides BACOVA_03148 and BACOVA_03149 are separated by 114 nucleotides BACOVA_03149 and BACOVA_03150 are separated by 54 nucleotides BACOVA_03150 and BACOVA_03151 are separated by 36 nucleotides
BACOVA_03147: BACOVA_03147 - ABC 3 transport family protein, at 236,636 to 237,460
_03147
BACOVA_03148: BACOVA_03148 - hypothetical protein, at 237,450 to 237,893
_03148
BACOVA_03149: BACOVA_03149 - hypothetical protein, at 238,008 to 238,340
_03149
BACOVA_03150: BACOVA_03150 - leucine Rich Repeat protein, at 238,395 to 239,135
_03150
BACOVA_03151: BACOVA_03151 - peptidase, M28 family, at 239,172 to 240,173
_03151
Position (kb) 238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 237.212 kb on - strand, within BACOVA_03147 at 237.359 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.361 kb on - strand, within BACOVA_03147 at 237.428 kb on - strand at 237.428 kb on - strand at 237.428 kb on - strand at 237.435 kb on - strand at 237.438 kb on - strand at 237.472 kb on - strand at 237.596 kb on - strand, within BACOVA_03148 at 237.635 kb on - strand, within BACOVA_03148 at 237.635 kb on - strand, within BACOVA_03148 at 237.686 kb on - strand, within BACOVA_03148 at 237.691 kb on - strand, within BACOVA_03148 at 237.877 kb on - strand at 237.900 kb on - strand at 237.902 kb on - strand at 237.938 kb on - strand at 237.938 kb on - strand at 237.957 kb on + strand at 237.990 kb on + strand at 237.991 kb on - strand at 237.993 kb on + strand at 237.994 kb on - strand at 238.003 kb on - strand at 238.022 kb on + strand at 238.022 kb on + strand at 238.023 kb on - strand at 238.023 kb on - strand at 238.024 kb on + strand at 238.024 kb on + strand at 238.024 kb on + strand at 238.025 kb on - strand at 238.027 kb on + strand at 238.058 kb on - strand, within BACOVA_03149 at 238.058 kb on - strand, within BACOVA_03149 at 238.085 kb on + strand, within BACOVA_03149 at 238.196 kb on - strand, within BACOVA_03149 at 238.219 kb on + strand, within BACOVA_03149 at 238.219 kb on + strand, within BACOVA_03149 at 238.220 kb on - strand, within BACOVA_03149 at 238.250 kb on - strand, within BACOVA_03149 at 238.282 kb on + strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.283 kb on - strand, within BACOVA_03149 at 238.285 kb on - strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.286 kb on + strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.287 kb on - strand, within BACOVA_03149 at 238.299 kb on - strand, within BACOVA_03149 at 238.306 kb on + strand, within BACOVA_03149 at 238.307 kb on - strand at 238.308 kb on + strand at 238.309 kb on - strand at 238.309 kb on - strand at 238.338 kb on + strand at 238.338 kb on + strand at 238.339 kb on - strand at 238.344 kb on - strand at 238.349 kb on + strand at 238.351 kb on + strand at 238.351 kb on + strand at 238.351 kb on + strand at 238.352 kb on - strand at 238.383 kb on + strand at 238.457 kb on + strand at 238.469 kb on + strand, within BACOVA_03150 at 238.469 kb on + strand, within BACOVA_03150 at 238.469 kb on + strand, within BACOVA_03150 at 238.485 kb on - strand, within BACOVA_03150 at 238.547 kb on + strand, within BACOVA_03150 at 238.548 kb on - strand, within BACOVA_03150 at 238.549 kb on + strand, within BACOVA_03150 at 238.582 kb on + strand, within BACOVA_03150 at 238.617 kb on + strand, within BACOVA_03150 at 238.626 kb on + strand, within BACOVA_03150 at 238.627 kb on - strand, within BACOVA_03150 at 238.628 kb on + strand, within BACOVA_03150 at 238.677 kb on - strand, within BACOVA_03150 at 238.691 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.699 kb on + strand, within BACOVA_03150 at 238.700 kb on - strand, within BACOVA_03150 at 238.744 kb on + strand, within BACOVA_03150 at 238.744 kb on + strand, within BACOVA_03150 at 238.781 kb on + strand, within BACOVA_03150 at 238.782 kb on - strand, within BACOVA_03150 at 238.783 kb on + strand, within BACOVA_03150 at 238.813 kb on + strand, within BACOVA_03150 at 238.824 kb on + strand, within BACOVA_03150 at 238.825 kb on - strand, within BACOVA_03150 at 238.862 kb on + strand, within BACOVA_03150 at 238.863 kb on - strand, within BACOVA_03150 at 238.865 kb on + strand, within BACOVA_03150 at 238.866 kb on - strand, within BACOVA_03150 at 238.889 kb on + strand, within BACOVA_03150 at 238.890 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.898 kb on - strand, within BACOVA_03150 at 238.930 kb on + strand, within BACOVA_03150 at 238.931 kb on - strand, within BACOVA_03150 at 238.941 kb on + strand, within BACOVA_03150 at 238.980 kb on - strand, within BACOVA_03150 at 238.980 kb on - strand, within BACOVA_03150 at 239.060 kb on + strand, within BACOVA_03150 at 239.066 kb on + strand at 239.066 kb on + strand at 239.087 kb on + strand at 239.139 kb on - strand at 239.155 kb on + strand at 239.155 kb on + strand at 239.162 kb on + strand at 239.162 kb on + strand at 239.166 kb on + strand at 239.166 kb on + strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.167 kb on - strand at 239.224 kb on + strand at 239.262 kb on - strand at 239.285 kb on + strand, within BACOVA_03151 at 239.288 kb on + strand, within BACOVA_03151
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 237,212 - BACOVA_03147 0.70 -1.5 237,359 - BACOVA_03147 0.88 -0.7 237,361 - BACOVA_03147 0.88 +1.3 237,361 - BACOVA_03147 0.88 -0.9 237,361 - BACOVA_03147 0.88 -0.1 237,361 - BACOVA_03147 0.88 +0.3 237,361 - BACOVA_03147 0.88 +0.1 237,361 - BACOVA_03147 0.88 -1.3 237,361 - BACOVA_03147 0.88 +0.9 237,361 - BACOVA_03147 0.88 +0.2 237,428 - +0.6 237,428 - -2.1 237,428 - +0.6 237,435 - -0.9 237,438 - +0.1 237,472 - -0.3 237,596 - BACOVA_03148 0.33 -0.1 237,635 - BACOVA_03148 0.42 -0.1 237,635 - BACOVA_03148 0.42 -1.1 237,686 - BACOVA_03148 0.53 +0.9 237,691 - BACOVA_03148 0.54 -1.9 237,877 - -0.6 237,900 - +0.2 237,902 - -0.7 237,938 - -0.1 237,938 - -0.5 237,957 + -1.6 237,990 + -1.2 237,991 - -1.5 237,993 + +1.4 237,994 - -0.2 238,003 - -1.2 238,022 + +0.5 238,022 + +0.5 238,023 - -0.5 238,023 - -0.1 238,024 + +0.2 238,024 + -0.4 238,024 + +1.2 238,025 - -0.2 238,027 + +0.5 238,058 - BACOVA_03149 0.15 -1.4 238,058 - BACOVA_03149 0.15 -0.1 238,085 + BACOVA_03149 0.23 -0.7 238,196 - BACOVA_03149 0.56 -0.1 238,219 + BACOVA_03149 0.63 +0.9 238,219 + BACOVA_03149 0.63 +0.5 238,220 - BACOVA_03149 0.64 -0.1 238,250 - BACOVA_03149 0.73 -0.7 238,282 + BACOVA_03149 0.82 -1.5 238,283 - BACOVA_03149 0.83 -0.7 238,283 - BACOVA_03149 0.83 -0.2 238,283 - BACOVA_03149 0.83 -2.8 238,285 - BACOVA_03149 0.83 +0.2 238,286 + BACOVA_03149 0.83 +1.5 238,286 + BACOVA_03149 0.83 +0.9 238,286 + BACOVA_03149 0.83 -1.2 238,286 + BACOVA_03149 0.83 -1.1 238,286 + BACOVA_03149 0.83 -0.9 238,287 - BACOVA_03149 0.84 -1.3 238,287 - BACOVA_03149 0.84 +0.3 238,287 - BACOVA_03149 0.84 +0.6 238,287 - BACOVA_03149 0.84 -1.4 238,287 - BACOVA_03149 0.84 +1.9 238,287 - BACOVA_03149 0.84 -0.0 238,287 - BACOVA_03149 0.84 +1.3 238,299 - BACOVA_03149 0.87 -1.2 238,306 + BACOVA_03149 0.89 +0.1 238,307 - +0.9 238,308 + +0.2 238,309 - -0.3 238,309 - -0.1 238,338 + -0.3 238,338 + -0.3 238,339 - +0.7 238,344 - +0.0 238,349 + +0.3 238,351 + -0.5 238,351 + -0.3 238,351 + -0.4 238,352 - -0.4 238,383 + +1.2 238,457 + -0.0 238,469 + BACOVA_03150 0.10 -0.4 238,469 + BACOVA_03150 0.10 -2.0 238,469 + BACOVA_03150 0.10 -0.1 238,485 - BACOVA_03150 0.12 -0.7 238,547 + BACOVA_03150 0.21 -0.2 238,548 - BACOVA_03150 0.21 +1.9 238,549 + BACOVA_03150 0.21 +0.2 238,582 + BACOVA_03150 0.25 -1.3 238,617 + BACOVA_03150 0.30 -0.1 238,626 + BACOVA_03150 0.31 -0.9 238,627 - BACOVA_03150 0.31 +0.9 238,628 + BACOVA_03150 0.31 +0.9 238,677 - BACOVA_03150 0.38 +0.8 238,691 + BACOVA_03150 0.40 -0.6 238,699 + BACOVA_03150 0.41 +0.1 238,699 + BACOVA_03150 0.41 -0.3 238,699 + BACOVA_03150 0.41 -0.8 238,700 - BACOVA_03150 0.41 +0.8 238,744 + BACOVA_03150 0.47 +0.2 238,744 + BACOVA_03150 0.47 -1.0 238,781 + BACOVA_03150 0.52 +0.7 238,782 - BACOVA_03150 0.52 +0.5 238,783 + BACOVA_03150 0.52 +0.8 238,813 + BACOVA_03150 0.56 -1.4 238,824 + BACOVA_03150 0.58 -0.3 238,825 - BACOVA_03150 0.58 -0.5 238,862 + BACOVA_03150 0.63 -0.6 238,863 - BACOVA_03150 0.63 -1.1 238,865 + BACOVA_03150 0.63 +1.0 238,866 - BACOVA_03150 0.64 -0.1 238,889 + BACOVA_03150 0.67 +0.3 238,890 - BACOVA_03150 0.67 -1.2 238,898 - BACOVA_03150 0.68 +0.0 238,898 - BACOVA_03150 0.68 +0.9 238,898 - BACOVA_03150 0.68 +1.3 238,930 + BACOVA_03150 0.72 -0.2 238,931 - BACOVA_03150 0.72 -0.1 238,941 + BACOVA_03150 0.74 -2.9 238,980 - BACOVA_03150 0.79 -0.2 238,980 - BACOVA_03150 0.79 -0.4 239,060 + BACOVA_03150 0.90 +0.6 239,066 + +0.6 239,066 + -0.8 239,087 + +1.5 239,139 - -0.1 239,155 + +1.5 239,155 + -0.1 239,162 + -0.9 239,162 + +0.2 239,166 + +0.2 239,166 + -0.3 239,167 - +0.3 239,167 - -0.4 239,167 - -0.1 239,167 - -0.7 239,167 - +0.2 239,224 + -0.1 239,262 - +0.8 239,285 + BACOVA_03151 0.11 -0.0 239,288 + BACOVA_03151 0.12 -0.7
Or see this region's nucleotide sequence