Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02999

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02995 and BACOVA_02996 are separated by 173 nucleotidesBACOVA_02996 and BACOVA_02997 are separated by 27 nucleotidesBACOVA_02997 and BACOVA_02998 overlap by 4 nucleotidesBACOVA_02998 and BACOVA_02999 are separated by 4 nucleotidesBACOVA_02999 and BACOVA_03000 overlap by 71 nucleotidesBACOVA_03000 and BACOVA_03001 are separated by 199 nucleotidesBACOVA_03001 and BACOVA_03002 are separated by 223 nucleotidesBACOVA_03002 and BACOVA_03003 are separated by 76 nucleotides BACOVA_02995: BACOVA_02995 - DNA-binding helix-turn-helix protein, at 71,456 to 71,707 _02995 BACOVA_02996: BACOVA_02996 - hypothetical protein, at 71,881 to 72,258 _02996 BACOVA_02997: BACOVA_02997 - hypothetical protein, at 72,286 to 72,495 _02997 BACOVA_02998: BACOVA_02998 - hypothetical protein, at 72,492 to 72,641 _02998 BACOVA_02999: BACOVA_02999 - hypothetical protein, at 72,646 to 73,155 _02999 BACOVA_03000: BACOVA_03000 - hypothetical protein, at 73,085 to 73,192 _03000 BACOVA_03001: BACOVA_03001 - tRNA-Met, at 73,392 to 73,465 _03001 BACOVA_03002: BACOVA_03002 - hypothetical protein, at 73,689 to 74,075 _03002 BACOVA_03003: BACOVA_03003 - permease, YjgP/YjgQ family, at 74,152 to 76,050 _03003 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 71.708 kb on - strandat 71.722 kb on - strandat 71.891 kb on - strandat 72.342 kb on + strand, within BACOVA_02997at 72.360 kb on - strand, within BACOVA_02997at 72.360 kb on - strand, within BACOVA_02997at 72.376 kb on - strand, within BACOVA_02997at 72.378 kb on - strand, within BACOVA_02997at 72.387 kb on - strand, within BACOVA_02997at 72.409 kb on - strand, within BACOVA_02997at 72.446 kb on + strand, within BACOVA_02997at 72.455 kb on + strand, within BACOVA_02997at 72.460 kb on - strand, within BACOVA_02997at 72.460 kb on - strand, within BACOVA_02997at 72.465 kb on - strand, within BACOVA_02997at 72.479 kb on + strandat 72.505 kb on - strandat 72.505 kb on - strandat 72.520 kb on + strand, within BACOVA_02998at 72.584 kb on + strand, within BACOVA_02998at 72.585 kb on - strand, within BACOVA_02998at 72.585 kb on - strand, within BACOVA_02998at 72.596 kb on - strand, within BACOVA_02998at 72.607 kb on - strand, within BACOVA_02998at 72.607 kb on - strand, within BACOVA_02998at 72.693 kb on + strandat 72.693 kb on + strandat 72.694 kb on - strandat 72.705 kb on + strand, within BACOVA_02999at 72.706 kb on - strand, within BACOVA_02999at 72.723 kb on - strand, within BACOVA_02999at 72.742 kb on + strand, within BACOVA_02999at 72.743 kb on - strand, within BACOVA_02999at 72.745 kb on - strand, within BACOVA_02999at 72.753 kb on + strand, within BACOVA_02999at 72.754 kb on - strand, within BACOVA_02999at 72.754 kb on - strand, within BACOVA_02999at 72.864 kb on + strand, within BACOVA_02999at 72.882 kb on + strand, within BACOVA_02999at 72.900 kb on - strand, within BACOVA_02999at 72.912 kb on - strand, within BACOVA_02999at 72.915 kb on - strand, within BACOVA_02999at 72.922 kb on + strand, within BACOVA_02999at 72.923 kb on - strand, within BACOVA_02999at 72.923 kb on - strand, within BACOVA_02999at 72.924 kb on + strand, within BACOVA_02999at 72.924 kb on + strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.927 kb on + strand, within BACOVA_02999at 72.928 kb on - strand, within BACOVA_02999at 72.928 kb on - strand, within BACOVA_02999at 72.928 kb on - strand, within BACOVA_02999at 72.934 kb on - strand, within BACOVA_02999at 72.992 kb on + strand, within BACOVA_02999at 72.993 kb on - strand, within BACOVA_02999at 72.996 kb on + strand, within BACOVA_02999at 72.997 kb on - strand, within BACOVA_02999at 72.997 kb on - strand, within BACOVA_02999at 73.045 kb on - strand, within BACOVA_02999at 73.105 kb on - strandat 73.117 kb on - strandat 73.143 kb on - strandat 73.161 kb on + strand, within BACOVA_03000at 73.161 kb on + strand, within BACOVA_03000at 73.162 kb on - strand, within BACOVA_03000at 73.162 kb on - strand, within BACOVA_03000at 73.171 kb on + strand, within BACOVA_03000at 73.191 kb on - strandat 73.287 kb on + strandat 73.293 kb on + strandat 73.294 kb on - strandat 73.297 kb on + strandat 73.309 kb on + strandat 73.314 kb on - strandat 73.314 kb on - strandat 73.572 kb on + strandat 73.573 kb on - strandat 73.614 kb on - strandat 73.636 kb on + strandat 73.637 kb on - strandat 73.757 kb on + strand, within BACOVA_03002at 73.758 kb on - strand, within BACOVA_03002at 73.758 kb on - strand, within BACOVA_03002at 73.763 kb on + strand, within BACOVA_03002at 73.763 kb on + strand, within BACOVA_03002at 73.819 kb on + strand, within BACOVA_03002at 73.823 kb on - strand, within BACOVA_03002at 73.950 kb on + strand, within BACOVA_03002at 73.951 kb on - strand, within BACOVA_03002at 73.951 kb on - strand, within BACOVA_03002at 73.951 kb on - strand, within BACOVA_03002at 73.971 kb on + strand, within BACOVA_03002at 73.972 kb on - strand, within BACOVA_03002at 73.972 kb on - strand, within BACOVA_03002at 73.972 kb on - strand, within BACOVA_03002at 74.012 kb on - strand, within BACOVA_03002

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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71,708 - -0.1
71,722 - +0.2
71,891 - -1.7
72,342 + BACOVA_02997 0.27 -0.7
72,360 - BACOVA_02997 0.35 +0.9
72,360 - BACOVA_02997 0.35 -0.8
72,376 - BACOVA_02997 0.43 +0.4
72,378 - BACOVA_02997 0.44 +0.2
72,387 - BACOVA_02997 0.48 +0.5
72,409 - BACOVA_02997 0.59 +1.0
72,446 + BACOVA_02997 0.76 -0.1
72,455 + BACOVA_02997 0.80 +0.1
72,460 - BACOVA_02997 0.83 -1.2
72,460 - BACOVA_02997 0.83 -2.0
72,465 - BACOVA_02997 0.85 -0.9
72,479 + -2.3
72,505 - -0.1
72,505 - +0.1
72,520 + BACOVA_02998 0.19 -1.1
72,584 + BACOVA_02998 0.61 +0.6
72,585 - BACOVA_02998 0.62 -1.4
72,585 - BACOVA_02998 0.62 -0.4
72,596 - BACOVA_02998 0.69 -0.5
72,607 - BACOVA_02998 0.77 +0.5
72,607 - BACOVA_02998 0.77 -0.8
72,693 + -0.2
72,693 + -0.7
72,694 - -0.7
72,705 + BACOVA_02999 0.12 -0.2
72,706 - BACOVA_02999 0.12 -0.3
72,723 - BACOVA_02999 0.15 -1.7
72,742 + BACOVA_02999 0.19 +0.2
72,743 - BACOVA_02999 0.19 -0.1
72,745 - BACOVA_02999 0.19 +0.9
72,753 + BACOVA_02999 0.21 -0.0
72,754 - BACOVA_02999 0.21 +0.1
72,754 - BACOVA_02999 0.21 +0.2
72,864 + BACOVA_02999 0.43 +0.9
72,882 + BACOVA_02999 0.46 +1.5
72,900 - BACOVA_02999 0.50 +0.9
72,912 - BACOVA_02999 0.52 +1.7
72,915 - BACOVA_02999 0.53 +0.5
72,922 + BACOVA_02999 0.54 +0.9
72,923 - BACOVA_02999 0.54 -0.7
72,923 - BACOVA_02999 0.54 -0.7
72,924 + BACOVA_02999 0.55 -1.9
72,924 + BACOVA_02999 0.55 -0.5
72,925 - BACOVA_02999 0.55 -2.5
72,925 - BACOVA_02999 0.55 -0.3
72,925 - BACOVA_02999 0.55 +0.3
72,925 - BACOVA_02999 0.55 -0.7
72,925 - BACOVA_02999 0.55 +0.9
72,927 + BACOVA_02999 0.55 +0.2
72,928 - BACOVA_02999 0.55 +0.1
72,928 - BACOVA_02999 0.55 -0.7
72,928 - BACOVA_02999 0.55 +0.3
72,934 - BACOVA_02999 0.56 +0.8
72,992 + BACOVA_02999 0.68 +1.5
72,993 - BACOVA_02999 0.68 +1.7
72,996 + BACOVA_02999 0.69 +3.2
72,997 - BACOVA_02999 0.69 +0.3
72,997 - BACOVA_02999 0.69 +0.7
73,045 - BACOVA_02999 0.78 -0.5
73,105 - -1.6
73,117 - +0.9
73,143 - -0.4
73,161 + BACOVA_03000 0.70 +1.7
73,161 + BACOVA_03000 0.70 -0.6
73,162 - BACOVA_03000 0.71 +0.2
73,162 - BACOVA_03000 0.71 +0.5
73,171 + BACOVA_03000 0.80 -1.7
73,191 - -0.3
73,287 + +1.1
73,293 + -0.3
73,294 - -0.4
73,297 + -0.5
73,309 + +1.6
73,314 - +0.1
73,314 - -0.6
73,572 + +0.5
73,573 - -1.0
73,614 - -0.4
73,636 + +0.2
73,637 - -1.3
73,757 + BACOVA_03002 0.18 -1.1
73,758 - BACOVA_03002 0.18 -0.9
73,758 - BACOVA_03002 0.18 -2.8
73,763 + BACOVA_03002 0.19 -1.9
73,763 + BACOVA_03002 0.19 -0.7
73,819 + BACOVA_03002 0.34 -2.9
73,823 - BACOVA_03002 0.35 -1.9
73,950 + BACOVA_03002 0.67 -0.7
73,951 - BACOVA_03002 0.68 -2.9
73,951 - BACOVA_03002 0.68 -0.4
73,951 - BACOVA_03002 0.68 -1.1
73,971 + BACOVA_03002 0.73 -2.8
73,972 - BACOVA_03002 0.73 -1.4
73,972 - BACOVA_03002 0.73 -0.7
73,972 - BACOVA_03002 0.73 -0.7
74,012 - BACOVA_03002 0.83 -0.8

Or see this region's nucleotide sequence