Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02655

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02654 and BACOVA_02655 are separated by 17 nucleotidesBACOVA_02655 and BACOVA_02656 are separated by 46 nucleotides BACOVA_02654: BACOVA_02654 - glycosyl hydrolase, family 43, at 54,344 to 55,924 _02654 BACOVA_02655: BACOVA_02655 - hypothetical protein, at 55,942 to 56,046 _02655 BACOVA_02656: BACOVA_02656 - glycosyl hydrolase, family 43, at 56,093 to 57,553 _02656 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1at 54.986 kb on - strand, within BACOVA_02654at 55.105 kb on + strand, within BACOVA_02654at 55.106 kb on - strand, within BACOVA_02654at 55.323 kb on + strand, within BACOVA_02654at 55.326 kb on + strand, within BACOVA_02654at 55.327 kb on - strand, within BACOVA_02654at 55.342 kb on + strand, within BACOVA_02654at 55.365 kb on + strand, within BACOVA_02654at 55.389 kb on - strand, within BACOVA_02654at 55.449 kb on + strand, within BACOVA_02654at 55.462 kb on + strand, within BACOVA_02654at 55.562 kb on - strand, within BACOVA_02654at 55.564 kb on + strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.565 kb on - strand, within BACOVA_02654at 55.597 kb on + strand, within BACOVA_02654at 55.598 kb on - strand, within BACOVA_02654at 55.604 kb on - strand, within BACOVA_02654at 55.604 kb on - strand, within BACOVA_02654at 55.611 kb on + strand, within BACOVA_02654at 55.612 kb on - strand, within BACOVA_02654at 55.629 kb on + strand, within BACOVA_02654at 55.629 kb on + strand, within BACOVA_02654at 55.640 kb on - strand, within BACOVA_02654at 55.672 kb on + strand, within BACOVA_02654at 55.713 kb on - strand, within BACOVA_02654at 55.713 kb on - strand, within BACOVA_02654at 55.767 kb on + strandat 55.791 kb on + strandat 55.791 kb on + strandat 55.791 kb on + strandat 55.792 kb on - strandat 55.792 kb on - strandat 55.792 kb on - strandat 55.852 kb on + strandat 55.927 kb on + strandat 55.929 kb on + strandat 55.931 kb on + strandat 55.944 kb on - strandat 56.034 kb on + strand, within BACOVA_02655at 56.094 kb on + strandat 56.166 kb on + strandat 56.166 kb on + strandat 56.166 kb on + strandat 56.167 kb on - strandat 56.167 kb on - strandat 56.170 kb on + strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.171 kb on - strandat 56.175 kb on - strandat 56.176 kb on + strandat 56.176 kb on + strandat 56.177 kb on - strandat 56.177 kb on - strandat 56.177 kb on - strandat 56.181 kb on - strandat 56.189 kb on - strandat 56.242 kb on + strand, within BACOVA_02656at 56.265 kb on - strand, within BACOVA_02656at 56.275 kb on + strand, within BACOVA_02656at 56.276 kb on - strand, within BACOVA_02656at 56.276 kb on - strand, within BACOVA_02656at 56.277 kb on + strand, within BACOVA_02656at 56.277 kb on + strand, within BACOVA_02656at 56.303 kb on + strand, within BACOVA_02656at 56.421 kb on + strand, within BACOVA_02656at 56.641 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.734 kb on - strand, within BACOVA_02656at 56.767 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.850 kb on - strand, within BACOVA_02656at 56.910 kb on - strand, within BACOVA_02656at 56.960 kb on + strand, within BACOVA_02656

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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54,986 - BACOVA_02654 0.41 -0.4
55,105 + BACOVA_02654 0.48 -0.4
55,106 - BACOVA_02654 0.48 +0.7
55,323 + BACOVA_02654 0.62 -0.6
55,326 + BACOVA_02654 0.62 -1.7
55,327 - BACOVA_02654 0.62 -0.9
55,342 + BACOVA_02654 0.63 +0.4
55,365 + BACOVA_02654 0.65 -1.1
55,389 - BACOVA_02654 0.66 +0.5
55,449 + BACOVA_02654 0.70 +0.6
55,462 + BACOVA_02654 0.71 -1.3
55,562 - BACOVA_02654 0.77 +0.3
55,564 + BACOVA_02654 0.77 +0.2
55,565 - BACOVA_02654 0.77 -0.7
55,565 - BACOVA_02654 0.77 -1.7
55,565 - BACOVA_02654 0.77 -0.6
55,597 + BACOVA_02654 0.79 +0.0
55,598 - BACOVA_02654 0.79 +0.6
55,604 - BACOVA_02654 0.80 -0.5
55,604 - BACOVA_02654 0.80 +0.3
55,611 + BACOVA_02654 0.80 -1.1
55,612 - BACOVA_02654 0.80 -2.4
55,629 + BACOVA_02654 0.81 +1.3
55,629 + BACOVA_02654 0.81 +0.3
55,640 - BACOVA_02654 0.82 +1.4
55,672 + BACOVA_02654 0.84 +0.1
55,713 - BACOVA_02654 0.87 -0.1
55,713 - BACOVA_02654 0.87 -1.9
55,767 + -2.5
55,791 + +0.4
55,791 + +0.4
55,791 + -0.8
55,792 - +1.1
55,792 - -0.1
55,792 - -1.4
55,852 + -0.1
55,927 + -0.6
55,929 + +0.0
55,931 + -0.0
55,944 - -0.3
56,034 + BACOVA_02655 0.88 -0.6
56,094 + +0.8
56,166 + -1.2
56,166 + -0.5
56,166 + +0.2
56,167 - +0.7
56,167 - +0.2
56,170 + +0.5
56,171 - -1.4
56,171 - -0.0
56,171 - -0.4
56,171 - +0.6
56,175 - -0.3
56,176 + -0.3
56,176 + -1.9
56,177 - +0.7
56,177 - -0.5
56,177 - +0.3
56,181 - -0.7
56,189 - -0.6
56,242 + BACOVA_02656 0.10 +0.4
56,265 - BACOVA_02656 0.12 +1.5
56,275 + BACOVA_02656 0.12 +1.1
56,276 - BACOVA_02656 0.13 +0.9
56,276 - BACOVA_02656 0.13 +0.5
56,277 + BACOVA_02656 0.13 +0.0
56,277 + BACOVA_02656 0.13 -0.5
56,303 + BACOVA_02656 0.14 -1.7
56,421 + BACOVA_02656 0.22 -0.1
56,641 + BACOVA_02656 0.38 -0.6
56,733 + BACOVA_02656 0.44 +0.1
56,733 + BACOVA_02656 0.44 -0.7
56,733 + BACOVA_02656 0.44 +0.2
56,734 - BACOVA_02656 0.44 -0.4
56,767 + BACOVA_02656 0.46 -0.2
56,801 + BACOVA_02656 0.48 +0.4
56,801 + BACOVA_02656 0.48 -1.2
56,801 + BACOVA_02656 0.48 +0.8
56,850 - BACOVA_02656 0.52 -0.4
56,910 - BACOVA_02656 0.56 +1.7
56,960 + BACOVA_02656 0.59 -1.0

Or see this region's nucleotide sequence