Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02019

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02017 and BACOVA_02018 are separated by 121 nucleotidesBACOVA_02018 and BACOVA_02019 are separated by 87 nucleotidesBACOVA_02019 and BACOVA_02020 are separated by 218 nucleotides BACOVA_02017: BACOVA_02017 - outer membrane efflux protein, at 320,629 to 321,960 _02017 BACOVA_02018: BACOVA_02018 - hypothetical protein, at 322,082 to 322,264 _02018 BACOVA_02019: BACOVA_02019 - hypothetical protein, at 322,352 to 322,948 _02019 BACOVA_02020: BACOVA_02020 - hypothetical protein, at 323,167 to 325,680 _02020 Position (kb) 322 323Strain fitness (log2 ratio) -2 -1 0 1 2at 321.373 kb on - strand, within BACOVA_02017at 321.399 kb on + strand, within BACOVA_02017at 321.429 kb on + strand, within BACOVA_02017at 321.432 kb on + strand, within BACOVA_02017at 321.432 kb on + strand, within BACOVA_02017at 321.459 kb on + strand, within BACOVA_02017at 321.459 kb on + strand, within BACOVA_02017at 321.460 kb on - strand, within BACOVA_02017at 321.509 kb on + strand, within BACOVA_02017at 321.510 kb on - strand, within BACOVA_02017at 321.531 kb on + strand, within BACOVA_02017at 321.531 kb on + strand, within BACOVA_02017at 321.586 kb on - strand, within BACOVA_02017at 321.597 kb on + strand, within BACOVA_02017at 321.598 kb on - strand, within BACOVA_02017at 321.598 kb on - strand, within BACOVA_02017at 321.603 kb on + strand, within BACOVA_02017at 321.604 kb on - strand, within BACOVA_02017at 321.678 kb on + strand, within BACOVA_02017at 321.679 kb on - strand, within BACOVA_02017at 321.681 kb on + strand, within BACOVA_02017at 321.682 kb on - strand, within BACOVA_02017at 321.682 kb on - strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.683 kb on + strand, within BACOVA_02017at 321.695 kb on + strand, within BACOVA_02017at 321.738 kb on + strand, within BACOVA_02017at 321.742 kb on - strand, within BACOVA_02017at 321.742 kb on - strand, within BACOVA_02017at 321.793 kb on + strand, within BACOVA_02017at 321.800 kb on + strand, within BACOVA_02017at 321.800 kb on + strand, within BACOVA_02017at 321.800 kb on + strand, within BACOVA_02017at 321.847 kb on - strandat 321.893 kb on - strandat 321.920 kb on - strandat 321.964 kb on - strandat 321.965 kb on + strandat 321.965 kb on + strandat 321.965 kb on + strandat 321.966 kb on - strandat 321.966 kb on - strandat 321.966 kb on - strandat 321.975 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.005 kb on + strandat 322.006 kb on - strandat 322.035 kb on + strandat 322.090 kb on - strandat 322.115 kb on - strand, within BACOVA_02018at 322.121 kb on + strand, within BACOVA_02018at 322.121 kb on + strand, within BACOVA_02018at 322.122 kb on - strand, within BACOVA_02018at 322.162 kb on - strand, within BACOVA_02018at 322.215 kb on + strand, within BACOVA_02018at 322.216 kb on - strand, within BACOVA_02018at 322.216 kb on - strand, within BACOVA_02018at 322.304 kb on + strandat 322.304 kb on + strandat 322.305 kb on - strandat 322.308 kb on + strandat 322.309 kb on - strandat 322.309 kb on - strandat 322.309 kb on - strandat 322.312 kb on + strandat 322.312 kb on + strandat 322.312 kb on + strandat 322.336 kb on - strandat 322.375 kb on - strandat 322.392 kb on + strandat 322.392 kb on + strandat 322.412 kb on - strand, within BACOVA_02019at 322.430 kb on + strand, within BACOVA_02019at 322.431 kb on - strand, within BACOVA_02019at 322.525 kb on + strand, within BACOVA_02019at 322.553 kb on + strand, within BACOVA_02019at 322.553 kb on + strand, within BACOVA_02019at 322.554 kb on - strand, within BACOVA_02019at 322.555 kb on + strand, within BACOVA_02019at 322.556 kb on - strand, within BACOVA_02019at 322.568 kb on - strand, within BACOVA_02019at 322.568 kb on - strand, within BACOVA_02019at 322.607 kb on - strand, within BACOVA_02019at 322.757 kb on - strand, within BACOVA_02019at 322.871 kb on - strand, within BACOVA_02019at 322.903 kb on + strandat 322.960 kb on + strandat 322.960 kb on + strandat 322.960 kb on + strandat 322.961 kb on - strandat 322.961 kb on - strandat 322.961 kb on - strandat 322.971 kb on + strandat 322.972 kb on - strandat 323.011 kb on - strandat 323.056 kb on + strandat 323.103 kb on + strandat 323.103 kb on + strandat 323.103 kb on + strandat 323.103 kb on + strandat 323.103 kb on + strandat 323.104 kb on - strandat 323.169 kb on - strandat 323.182 kb on + strandat 323.214 kb on + strandat 323.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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321,373 - BACOVA_02017 0.56 +1.2
321,399 + BACOVA_02017 0.58 +0.9
321,429 + BACOVA_02017 0.60 +0.7
321,432 + BACOVA_02017 0.60 -0.0
321,432 + BACOVA_02017 0.60 -1.4
321,459 + BACOVA_02017 0.62 +0.4
321,459 + BACOVA_02017 0.62 +0.8
321,460 - BACOVA_02017 0.62 +1.8
321,509 + BACOVA_02017 0.66 -0.1
321,510 - BACOVA_02017 0.66 +1.0
321,531 + BACOVA_02017 0.68 +0.6
321,531 + BACOVA_02017 0.68 -0.5
321,586 - BACOVA_02017 0.72 +0.9
321,597 + BACOVA_02017 0.73 -0.2
321,598 - BACOVA_02017 0.73 +0.1
321,598 - BACOVA_02017 0.73 +1.1
321,603 + BACOVA_02017 0.73 +0.2
321,604 - BACOVA_02017 0.73 +0.9
321,678 + BACOVA_02017 0.79 -0.6
321,679 - BACOVA_02017 0.79 -0.2
321,681 + BACOVA_02017 0.79 +0.2
321,682 - BACOVA_02017 0.79 +1.2
321,682 - BACOVA_02017 0.79 +1.5
321,683 + BACOVA_02017 0.79 +0.8
321,683 + BACOVA_02017 0.79 +0.5
321,683 + BACOVA_02017 0.79 -0.2
321,683 + BACOVA_02017 0.79 +0.9
321,683 + BACOVA_02017 0.79 +0.6
321,695 + BACOVA_02017 0.80 -0.6
321,738 + BACOVA_02017 0.83 -0.2
321,742 - BACOVA_02017 0.84 +0.7
321,742 - BACOVA_02017 0.84 +0.3
321,793 + BACOVA_02017 0.87 -0.5
321,800 + BACOVA_02017 0.88 +0.6
321,800 + BACOVA_02017 0.88 -1.6
321,800 + BACOVA_02017 0.88 +0.6
321,847 - +0.7
321,893 - -0.2
321,920 - -1.8
321,964 - +1.0
321,965 + +0.4
321,965 + +0.0
321,965 + +1.1
321,966 - -0.0
321,966 - -0.4
321,966 - -1.3
321,975 + +0.1
322,005 + -0.6
322,005 + -0.2
322,005 + -0.5
322,005 + +0.5
322,005 + +0.6
322,005 + +0.4
322,006 - +0.8
322,035 + +0.4
322,090 - +0.6
322,115 - BACOVA_02018 0.18 +0.5
322,121 + BACOVA_02018 0.21 +0.3
322,121 + BACOVA_02018 0.21 +1.6
322,122 - BACOVA_02018 0.22 +1.0
322,162 - BACOVA_02018 0.44 +0.2
322,215 + BACOVA_02018 0.73 -0.2
322,216 - BACOVA_02018 0.73 +1.8
322,216 - BACOVA_02018 0.73 +1.1
322,304 + -0.6
322,304 + +0.2
322,305 - -0.7
322,308 + +0.9
322,309 - +0.7
322,309 - +0.1
322,309 - -0.9
322,312 + +0.6
322,312 + +0.6
322,312 + -0.6
322,336 - +1.6
322,375 - +0.9
322,392 + +0.7
322,392 + +1.3
322,412 - BACOVA_02019 0.10 +0.8
322,430 + BACOVA_02019 0.13 +1.1
322,431 - BACOVA_02019 0.13 +1.2
322,525 + BACOVA_02019 0.29 -1.4
322,553 + BACOVA_02019 0.34 +1.1
322,553 + BACOVA_02019 0.34 -0.4
322,554 - BACOVA_02019 0.34 +0.8
322,555 + BACOVA_02019 0.34 -0.4
322,556 - BACOVA_02019 0.34 +0.2
322,568 - BACOVA_02019 0.36 +0.8
322,568 - BACOVA_02019 0.36 +0.8
322,607 - BACOVA_02019 0.43 +0.2
322,757 - BACOVA_02019 0.68 +0.7
322,871 - BACOVA_02019 0.87 -0.0
322,903 + +0.2
322,960 + +0.8
322,960 + +0.6
322,960 + +1.7
322,961 - +0.3
322,961 - -0.2
322,961 - +0.3
322,971 + +0.5
322,972 - +0.8
323,011 - +1.0
323,056 + +1.7
323,103 + -1.3
323,103 + +0.9
323,103 + +0.1
323,103 + +0.0
323,103 + +1.0
323,104 - +0.2
323,169 - +0.8
323,182 + +0.5
323,214 + -0.5
323,215 - -0.4

Or see this region's nucleotide sequence