Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01745 and BACOVA_01746 overlap by 23 nucleotides BACOVA_01746 and BACOVA_01747 overlap by 4 nucleotides BACOVA_01747 and BACOVA_01748 are separated by 66 nucleotides
BACOVA_01745: BACOVA_01745 - hypothetical protein, at 170,588 to 171,793
_01745
BACOVA_01746: BACOVA_01746 - hypothetical protein, at 171,771 to 172,772
_01746
BACOVA_01747: BACOVA_01747 - hypothetical protein, at 172,769 to 173,731
_01747
BACOVA_01748: BACOVA_01748 - hypothetical protein, at 173,798 to 174,964
_01748
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.770 kb on + strand at 171.780 kb on - strand at 171.780 kb on - strand at 171.815 kb on - strand at 171.815 kb on - strand at 171.818 kb on - strand at 171.821 kb on + strand at 171.835 kb on + strand at 171.835 kb on + strand at 171.835 kb on + strand at 171.893 kb on - strand, within BACOVA_01746 at 171.935 kb on - strand, within BACOVA_01746 at 171.935 kb on - strand, within BACOVA_01746 at 171.941 kb on - strand, within BACOVA_01746 at 172.040 kb on - strand, within BACOVA_01746 at 172.065 kb on - strand, within BACOVA_01746 at 172.067 kb on - strand, within BACOVA_01746 at 172.093 kb on - strand, within BACOVA_01746 at 172.152 kb on - strand, within BACOVA_01746 at 172.187 kb on - strand, within BACOVA_01746 at 172.196 kb on - strand, within BACOVA_01746 at 172.201 kb on + strand, within BACOVA_01746 at 172.202 kb on - strand, within BACOVA_01746 at 172.214 kb on - strand, within BACOVA_01746 at 172.236 kb on - strand, within BACOVA_01746 at 172.390 kb on - strand, within BACOVA_01746 at 172.390 kb on - strand, within BACOVA_01746 at 172.426 kb on + strand, within BACOVA_01746 at 172.427 kb on - strand, within BACOVA_01746 at 172.429 kb on - strand, within BACOVA_01746 at 172.429 kb on - strand, within BACOVA_01746 at 172.462 kb on - strand, within BACOVA_01746 at 172.476 kb on - strand, within BACOVA_01746 at 172.484 kb on - strand, within BACOVA_01746 at 172.524 kb on - strand, within BACOVA_01746 at 172.559 kb on + strand, within BACOVA_01746 at 172.564 kb on - strand, within BACOVA_01746 at 172.622 kb on - strand, within BACOVA_01746 at 172.661 kb on - strand, within BACOVA_01746 at 172.665 kb on + strand, within BACOVA_01746 at 172.682 kb on + strand at 172.684 kb on + strand at 172.685 kb on - strand at 172.724 kb on + strand at 172.744 kb on - strand at 172.788 kb on + strand at 172.788 kb on + strand at 172.798 kb on + strand at 172.799 kb on - strand at 172.799 kb on - strand at 172.814 kb on - strand at 172.827 kb on + strand at 172.827 kb on + strand at 172.839 kb on + strand at 172.852 kb on + strand at 172.853 kb on - strand at 172.860 kb on + strand at 172.895 kb on + strand, within BACOVA_01747 at 172.979 kb on - strand, within BACOVA_01747 at 172.979 kb on - strand, within BACOVA_01747 at 172.979 kb on - strand, within BACOVA_01747 at 172.981 kb on - strand, within BACOVA_01747 at 173.027 kb on + strand, within BACOVA_01747 at 173.027 kb on + strand, within BACOVA_01747 at 173.027 kb on + strand, within BACOVA_01747 at 173.027 kb on + strand, within BACOVA_01747 at 173.027 kb on + strand, within BACOVA_01747 at 173.035 kb on - strand, within BACOVA_01747 at 173.035 kb on - strand, within BACOVA_01747 at 173.047 kb on - strand, within BACOVA_01747 at 173.079 kb on + strand, within BACOVA_01747 at 173.080 kb on - strand, within BACOVA_01747 at 173.134 kb on - strand, within BACOVA_01747 at 173.134 kb on - strand, within BACOVA_01747 at 173.224 kb on - strand, within BACOVA_01747 at 173.305 kb on + strand, within BACOVA_01747 at 173.313 kb on - strand, within BACOVA_01747 at 173.403 kb on + strand, within BACOVA_01747 at 173.409 kb on - strand, within BACOVA_01747 at 173.493 kb on - strand, within BACOVA_01747 at 173.543 kb on + strand, within BACOVA_01747 at 173.546 kb on - strand, within BACOVA_01747 at 173.550 kb on + strand, within BACOVA_01747 at 173.551 kb on - strand, within BACOVA_01747 at 173.551 kb on - strand, within BACOVA_01747 at 173.551 kb on - strand, within BACOVA_01747 at 173.570 kb on - strand, within BACOVA_01747 at 173.570 kb on - strand, within BACOVA_01747 at 173.688 kb on + strand at 173.688 kb on + strand at 173.727 kb on + strand at 173.746 kb on - strand at 173.746 kb on - strand at 173.777 kb on + strand at 173.780 kb on + strand at 173.783 kb on - strand at 173.786 kb on - strand at 173.792 kb on - strand at 173.794 kb on - strand at 173.841 kb on + strand at 173.841 kb on + strand at 173.849 kb on + strand at 173.849 kb on + strand at 173.849 kb on + strand at 173.852 kb on - strand at 173.852 kb on - strand at 173.859 kb on + strand at 173.862 kb on - strand at 173.921 kb on - strand, within BACOVA_01748 at 173.921 kb on - strand, within BACOVA_01748 at 174.069 kb on + strand, within BACOVA_01748 at 174.153 kb on + strand, within BACOVA_01748 at 174.154 kb on - strand, within BACOVA_01748 at 174.156 kb on + strand, within BACOVA_01748 at 174.157 kb on - strand, within BACOVA_01748 at 174.159 kb on + strand, within BACOVA_01748 at 174.159 kb on + strand, within BACOVA_01748 at 174.181 kb on + strand, within BACOVA_01748 at 174.181 kb on + strand, within BACOVA_01748 at 174.181 kb on + strand, within BACOVA_01748 at 174.213 kb on + strand, within BACOVA_01748 at 174.215 kb on + strand, within BACOVA_01748 at 174.225 kb on + strand, within BACOVA_01748 at 174.301 kb on - strand, within BACOVA_01748 at 174.355 kb on + strand, within BACOVA_01748 at 174.356 kb on - strand, within BACOVA_01748 at 174.361 kb on + strand, within BACOVA_01748 at 174.361 kb on + strand, within BACOVA_01748 at 174.361 kb on + strand, within BACOVA_01748 at 174.413 kb on - strand, within BACOVA_01748 at 174.415 kb on - strand, within BACOVA_01748 at 174.418 kb on + strand, within BACOVA_01748 at 174.434 kb on + strand, within BACOVA_01748 at 174.436 kb on + strand, within BACOVA_01748 at 174.437 kb on - strand, within BACOVA_01748 at 174.437 kb on - strand, within BACOVA_01748 at 174.439 kb on - strand, within BACOVA_01748 at 174.440 kb on + strand, within BACOVA_01748 at 174.474 kb on + strand, within BACOVA_01748 at 174.474 kb on + strand, within BACOVA_01748 at 174.475 kb on + strand, within BACOVA_01748 at 174.483 kb on + strand, within BACOVA_01748 at 174.555 kb on - strand, within BACOVA_01748 at 174.555 kb on - strand, within BACOVA_01748 at 174.555 kb on - strand, within BACOVA_01748 at 174.589 kb on + strand, within BACOVA_01748 at 174.626 kb on - strand, within BACOVA_01748 at 174.626 kb on - strand, within BACOVA_01748 at 174.626 kb on - strand, within BACOVA_01748 at 174.627 kb on + strand, within BACOVA_01748 at 174.627 kb on + strand, within BACOVA_01748 at 174.628 kb on - strand, within BACOVA_01748 at 174.629 kb on + strand, within BACOVA_01748 at 174.630 kb on - strand, within BACOVA_01748 at 174.631 kb on + strand, within BACOVA_01748 at 174.631 kb on + strand, within BACOVA_01748 at 174.631 kb on + strand, within BACOVA_01748 at 174.631 kb on + strand, within BACOVA_01748 at 174.632 kb on - strand, within BACOVA_01748 at 174.636 kb on - strand, within BACOVA_01748 at 174.638 kb on + strand, within BACOVA_01748
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 171,770 + -0.3 171,780 - -0.7 171,780 - +0.8 171,815 - +1.6 171,815 - +1.2 171,818 - -0.5 171,821 + -0.3 171,835 + +0.2 171,835 + +0.8 171,835 + -0.0 171,893 - BACOVA_01746 0.12 -0.9 171,935 - BACOVA_01746 0.16 -1.3 171,935 - BACOVA_01746 0.16 -2.4 171,941 - BACOVA_01746 0.17 +0.9 172,040 - BACOVA_01746 0.27 -0.1 172,065 - BACOVA_01746 0.29 +0.8 172,067 - BACOVA_01746 0.30 +0.3 172,093 - BACOVA_01746 0.32 -0.8 172,152 - BACOVA_01746 0.38 +1.3 172,187 - BACOVA_01746 0.42 +1.3 172,196 - BACOVA_01746 0.42 -1.0 172,201 + BACOVA_01746 0.43 -1.2 172,202 - BACOVA_01746 0.43 +0.1 172,214 - BACOVA_01746 0.44 -2.7 172,236 - BACOVA_01746 0.46 -0.7 172,390 - BACOVA_01746 0.62 -1.5 172,390 - BACOVA_01746 0.62 -0.5 172,426 + BACOVA_01746 0.65 -1.3 172,427 - BACOVA_01746 0.65 +1.2 172,429 - BACOVA_01746 0.66 +0.0 172,429 - BACOVA_01746 0.66 -1.0 172,462 - BACOVA_01746 0.69 -0.2 172,476 - BACOVA_01746 0.70 +0.8 172,484 - BACOVA_01746 0.71 -0.1 172,524 - BACOVA_01746 0.75 -0.5 172,559 + BACOVA_01746 0.79 -0.9 172,564 - BACOVA_01746 0.79 +0.8 172,622 - BACOVA_01746 0.85 +0.3 172,661 - BACOVA_01746 0.89 -0.6 172,665 + BACOVA_01746 0.89 -0.2 172,682 + -1.3 172,684 + -0.4 172,685 - -2.0 172,724 + -0.2 172,744 - +1.8 172,788 + +1.5 172,788 + -0.2 172,798 + -0.8 172,799 - -0.3 172,799 - -0.4 172,814 - -0.2 172,827 + -1.3 172,827 + +1.2 172,839 + +0.7 172,852 + +1.4 172,853 - +0.3 172,860 + +0.4 172,895 + BACOVA_01747 0.13 -0.7 172,979 - BACOVA_01747 0.22 +0.0 172,979 - BACOVA_01747 0.22 -0.7 172,979 - BACOVA_01747 0.22 +0.4 172,981 - BACOVA_01747 0.22 -1.7 173,027 + BACOVA_01747 0.27 -2.3 173,027 + BACOVA_01747 0.27 -1.6 173,027 + BACOVA_01747 0.27 +2.0 173,027 + BACOVA_01747 0.27 -1.5 173,027 + BACOVA_01747 0.27 -0.6 173,035 - BACOVA_01747 0.28 +0.2 173,035 - BACOVA_01747 0.28 -1.9 173,047 - BACOVA_01747 0.29 +0.2 173,079 + BACOVA_01747 0.32 -0.9 173,080 - BACOVA_01747 0.32 +0.3 173,134 - BACOVA_01747 0.38 -1.2 173,134 - BACOVA_01747 0.38 -0.5 173,224 - BACOVA_01747 0.47 +0.5 173,305 + BACOVA_01747 0.56 -0.0 173,313 - BACOVA_01747 0.56 -0.6 173,403 + BACOVA_01747 0.66 -1.0 173,409 - BACOVA_01747 0.66 -0.9 173,493 - BACOVA_01747 0.75 -0.1 173,543 + BACOVA_01747 0.80 -1.7 173,546 - BACOVA_01747 0.81 +0.8 173,550 + BACOVA_01747 0.81 -0.1 173,551 - BACOVA_01747 0.81 +0.5 173,551 - BACOVA_01747 0.81 -0.3 173,551 - BACOVA_01747 0.81 -0.1 173,570 - BACOVA_01747 0.83 -1.7 173,570 - BACOVA_01747 0.83 -0.5 173,688 + -1.5 173,688 + -1.5 173,727 + -0.6 173,746 - +0.7 173,746 - +0.3 173,777 + -1.3 173,780 + -1.2 173,783 - -0.7 173,786 - -1.1 173,792 - +0.8 173,794 - -0.2 173,841 + +1.0 173,841 + -0.3 173,849 + +0.7 173,849 + -0.7 173,849 + -1.7 173,852 - +0.4 173,852 - -0.6 173,859 + -0.5 173,862 - -0.7 173,921 - BACOVA_01748 0.11 -0.7 173,921 - BACOVA_01748 0.11 -0.6 174,069 + BACOVA_01748 0.23 -2.3 174,153 + BACOVA_01748 0.30 -0.2 174,154 - BACOVA_01748 0.31 -0.7 174,156 + BACOVA_01748 0.31 -0.7 174,157 - BACOVA_01748 0.31 -1.2 174,159 + BACOVA_01748 0.31 -1.2 174,159 + BACOVA_01748 0.31 +0.1 174,181 + BACOVA_01748 0.33 +1.8 174,181 + BACOVA_01748 0.33 -1.1 174,181 + BACOVA_01748 0.33 -0.9 174,213 + BACOVA_01748 0.36 -0.5 174,215 + BACOVA_01748 0.36 -0.2 174,225 + BACOVA_01748 0.37 +2.5 174,301 - BACOVA_01748 0.43 -0.5 174,355 + BACOVA_01748 0.48 +0.0 174,356 - BACOVA_01748 0.48 +0.9 174,361 + BACOVA_01748 0.48 +0.1 174,361 + BACOVA_01748 0.48 -0.3 174,361 + BACOVA_01748 0.48 +0.2 174,413 - BACOVA_01748 0.53 -2.0 174,415 - BACOVA_01748 0.53 +0.3 174,418 + BACOVA_01748 0.53 +1.7 174,434 + BACOVA_01748 0.54 -0.4 174,436 + BACOVA_01748 0.55 +0.5 174,437 - BACOVA_01748 0.55 -0.2 174,437 - BACOVA_01748 0.55 +0.0 174,439 - BACOVA_01748 0.55 -0.4 174,440 + BACOVA_01748 0.55 +0.1 174,474 + BACOVA_01748 0.58 +0.4 174,474 + BACOVA_01748 0.58 +0.6 174,475 + BACOVA_01748 0.58 -0.2 174,483 + BACOVA_01748 0.59 -0.2 174,555 - BACOVA_01748 0.65 +2.2 174,555 - BACOVA_01748 0.65 +0.0 174,555 - BACOVA_01748 0.65 -0.2 174,589 + BACOVA_01748 0.68 -2.3 174,626 - BACOVA_01748 0.71 +0.1 174,626 - BACOVA_01748 0.71 -0.5 174,626 - BACOVA_01748 0.71 +0.1 174,627 + BACOVA_01748 0.71 -0.4 174,627 + BACOVA_01748 0.71 +0.0 174,628 - BACOVA_01748 0.71 -0.2 174,629 + BACOVA_01748 0.71 -0.2 174,630 - BACOVA_01748 0.71 +1.4 174,631 + BACOVA_01748 0.71 +1.4 174,631 + BACOVA_01748 0.71 +0.8 174,631 + BACOVA_01748 0.71 -0.6 174,631 + BACOVA_01748 0.71 +0.8 174,632 - BACOVA_01748 0.71 -0.4 174,636 - BACOVA_01748 0.72 -0.7 174,638 + BACOVA_01748 0.72 -0.2
Or see this region's nucleotide sequence