Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01244 and BACOVA_01245 overlap by 23 nucleotides BACOVA_01245 and BACOVA_01246 are separated by 6 nucleotides BACOVA_01246 and BACOVA_01247 are separated by 27 nucleotides
BACOVA_01244: BACOVA_01244 - hypothetical protein, at 26,590 to 27,672
_01244
BACOVA_01245: BACOVA_01245 - AP endonuclease, family 2, at 27,650 to 28,531
_01245
BACOVA_01246: BACOVA_01246 - PQQ enzyme repeat protein, at 28,538 to 30,502
_01246
BACOVA_01247: BACOVA_01247 - SusD family protein, at 30,530 to 31,921
_01247
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.620 kb on - strand at 27.624 kb on - strand at 27.640 kb on + strand at 27.640 kb on + strand at 27.640 kb on + strand at 27.641 kb on - strand at 27.643 kb on - strand at 27.664 kb on + strand at 27.665 kb on - strand at 27.673 kb on + strand at 27.753 kb on + strand, within BACOVA_01245 at 27.754 kb on - strand, within BACOVA_01245 at 27.826 kb on + strand, within BACOVA_01245 at 27.872 kb on + strand, within BACOVA_01245 at 27.872 kb on + strand, within BACOVA_01245 at 27.873 kb on - strand, within BACOVA_01245 at 27.873 kb on - strand, within BACOVA_01245 at 27.873 kb on - strand, within BACOVA_01245 at 27.875 kb on - strand, within BACOVA_01245 at 27.877 kb on + strand, within BACOVA_01245 at 27.877 kb on + strand, within BACOVA_01245 at 27.878 kb on - strand, within BACOVA_01245 at 27.878 kb on - strand, within BACOVA_01245 at 27.878 kb on - strand, within BACOVA_01245 at 27.882 kb on - strand, within BACOVA_01245 at 27.883 kb on + strand, within BACOVA_01245 at 27.884 kb on - strand, within BACOVA_01245 at 27.928 kb on + strand, within BACOVA_01245 at 27.929 kb on - strand, within BACOVA_01245 at 27.929 kb on - strand, within BACOVA_01245 at 27.931 kb on - strand, within BACOVA_01245 at 28.004 kb on - strand, within BACOVA_01245 at 28.081 kb on + strand, within BACOVA_01245 at 28.081 kb on + strand, within BACOVA_01245 at 28.130 kb on - strand, within BACOVA_01245 at 28.152 kb on - strand, within BACOVA_01245 at 28.244 kb on + strand, within BACOVA_01245 at 28.274 kb on + strand, within BACOVA_01245 at 28.274 kb on + strand, within BACOVA_01245 at 28.274 kb on + strand, within BACOVA_01245 at 28.275 kb on - strand, within BACOVA_01245 at 28.275 kb on - strand, within BACOVA_01245 at 28.275 kb on - strand, within BACOVA_01245 at 28.318 kb on + strand, within BACOVA_01245 at 28.361 kb on - strand, within BACOVA_01245 at 28.362 kb on + strand, within BACOVA_01245 at 28.363 kb on - strand, within BACOVA_01245 at 28.363 kb on - strand, within BACOVA_01245 at 28.372 kb on + strand, within BACOVA_01245 at 28.390 kb on - strand, within BACOVA_01245 at 28.453 kb on + strand at 28.463 kb on + strand at 28.464 kb on - strand at 28.565 kb on - strand at 28.580 kb on - strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.637 kb on - strand at 28.640 kb on - strand at 28.643 kb on - strand at 28.772 kb on - strand, within BACOVA_01246 at 28.784 kb on + strand, within BACOVA_01246 at 28.788 kb on + strand, within BACOVA_01246 at 28.788 kb on + strand, within BACOVA_01246 at 28.789 kb on - strand, within BACOVA_01246 at 28.789 kb on - strand, within BACOVA_01246 at 28.789 kb on - strand, within BACOVA_01246 at 28.789 kb on - strand, within BACOVA_01246 at 28.796 kb on - strand, within BACOVA_01246 at 28.825 kb on - strand, within BACOVA_01246 at 28.972 kb on - strand, within BACOVA_01246 at 29.038 kb on - strand, within BACOVA_01246 at 29.043 kb on - strand, within BACOVA_01246 at 29.122 kb on + strand, within BACOVA_01246 at 29.131 kb on - strand, within BACOVA_01246 at 29.171 kb on - strand, within BACOVA_01246 at 29.222 kb on - strand, within BACOVA_01246 at 29.224 kb on + strand, within BACOVA_01246 at 29.277 kb on + strand, within BACOVA_01246 at 29.366 kb on - strand, within BACOVA_01246 at 29.366 kb on - strand, within BACOVA_01246 at 29.371 kb on - strand, within BACOVA_01246 at 29.372 kb on + strand, within BACOVA_01246 at 29.373 kb on - strand, within BACOVA_01246 at 29.373 kb on - strand, within BACOVA_01246 at 29.380 kb on + strand, within BACOVA_01246 at 29.381 kb on - strand, within BACOVA_01246 at 29.413 kb on + strand, within BACOVA_01246 at 29.413 kb on + strand, within BACOVA_01246 at 29.414 kb on - strand, within BACOVA_01246 at 29.446 kb on - strand, within BACOVA_01246 at 29.493 kb on - strand, within BACOVA_01246 at 29.500 kb on + strand, within BACOVA_01246 at 29.507 kb on + strand, within BACOVA_01246 at 29.507 kb on + strand, within BACOVA_01246 at 29.525 kb on - strand, within BACOVA_01246 at 29.539 kb on - strand, within BACOVA_01246 at 29.582 kb on + strand, within BACOVA_01246 at 29.582 kb on + strand, within BACOVA_01246 at 29.582 kb on + strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.630 kb on - strand, within BACOVA_01246 at 29.674 kb on + strand, within BACOVA_01246 at 29.674 kb on + strand, within BACOVA_01246 at 29.674 kb on + strand, within BACOVA_01246 at 29.675 kb on - strand, within BACOVA_01246 at 29.677 kb on + strand, within BACOVA_01246 at 29.683 kb on - strand, within BACOVA_01246 at 29.683 kb on - strand, within BACOVA_01246 at 29.705 kb on - strand, within BACOVA_01246 at 29.705 kb on - strand, within BACOVA_01246 at 29.706 kb on + strand, within BACOVA_01246 at 29.706 kb on + strand, within BACOVA_01246 at 29.711 kb on - strand, within BACOVA_01246 at 29.720 kb on - strand, within BACOVA_01246 at 29.723 kb on + strand, within BACOVA_01246 at 29.723 kb on - strand, within BACOVA_01246 at 29.723 kb on - strand, within BACOVA_01246 at 29.759 kb on - strand, within BACOVA_01246 at 29.808 kb on + strand, within BACOVA_01246 at 29.808 kb on + strand, within BACOVA_01246 at 29.808 kb on + strand, within BACOVA_01246 at 29.809 kb on - strand, within BACOVA_01246 at 29.809 kb on - strand, within BACOVA_01246 at 29.812 kb on + strand, within BACOVA_01246 at 29.812 kb on + strand, within BACOVA_01246 at 29.813 kb on - strand, within BACOVA_01246 at 29.813 kb on - strand, within BACOVA_01246 at 29.874 kb on + strand, within BACOVA_01246 at 29.874 kb on + strand, within BACOVA_01246 at 29.891 kb on - strand, within BACOVA_01246 at 29.939 kb on + strand, within BACOVA_01246 at 29.940 kb on - strand, within BACOVA_01246 at 29.950 kb on + strand, within BACOVA_01246 at 29.951 kb on - strand, within BACOVA_01246 at 29.951 kb on - strand, within BACOVA_01246 at 29.986 kb on - strand, within BACOVA_01246 at 29.986 kb on - strand, within BACOVA_01246 at 30.001 kb on + strand, within BACOVA_01246 at 30.002 kb on - strand, within BACOVA_01246 at 30.167 kb on - strand, within BACOVA_01246 at 30.349 kb on - strand at 30.349 kb on - strand at 30.376 kb on + strand at 30.377 kb on - strand at 30.411 kb on + strand at 30.414 kb on - strand at 30.484 kb on + strand at 30.486 kb on + strand at 30.488 kb on + strand at 30.489 kb on - strand at 30.522 kb on + strand at 30.529 kb on - strand at 30.532 kb on - strand at 30.532 kb on - strand at 30.595 kb on + strand at 30.612 kb on + strand at 30.622 kb on + strand at 30.622 kb on + strand at 30.644 kb on - strand at 30.652 kb on + strand at 30.724 kb on + strand, within BACOVA_01247 at 30.725 kb on - strand, within BACOVA_01247 at 30.764 kb on + strand, within BACOVA_01247 at 30.793 kb on + strand, within BACOVA_01247 at 30.817 kb on + strand, within BACOVA_01247 at 30.817 kb on + strand, within BACOVA_01247 at 30.839 kb on - strand, within BACOVA_01247 at 30.844 kb on - strand, within BACOVA_01247 at 30.870 kb on + strand, within BACOVA_01247 at 30.870 kb on + strand, within BACOVA_01247 at 30.870 kb on + strand, within BACOVA_01247 at 30.901 kb on + strand, within BACOVA_01247 at 30.922 kb on + strand, within BACOVA_01247 at 30.925 kb on + strand, within BACOVA_01247 at 30.926 kb on - strand, within BACOVA_01247 at 30.927 kb on + strand, within BACOVA_01247 at 30.928 kb on - strand, within BACOVA_01247 at 30.928 kb on - strand, within BACOVA_01247 at 30.956 kb on - strand, within BACOVA_01247 at 30.968 kb on + strand, within BACOVA_01247 at 30.969 kb on - strand, within BACOVA_01247 at 30.969 kb on - strand, within BACOVA_01247 at 30.986 kb on + strand, within BACOVA_01247 at 30.990 kb on + strand, within BACOVA_01247 at 30.990 kb on + strand, within BACOVA_01247 at 30.991 kb on - strand, within BACOVA_01247 at 30.994 kb on + strand, within BACOVA_01247 at 31.026 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.089 kb on + strand, within BACOVA_01247 at 31.089 kb on + strand, within BACOVA_01247 at 31.319 kb on + strand, within BACOVA_01247 at 31.319 kb on + strand, within BACOVA_01247 at 31.319 kb on + strand, within BACOVA_01247 at 31.320 kb on - strand, within BACOVA_01247 at 31.322 kb on - strand, within BACOVA_01247 at 31.322 kb on - strand, within BACOVA_01247 at 31.322 kb on - strand, within BACOVA_01247 at 31.339 kb on + strand, within BACOVA_01247 at 31.340 kb on - strand, within BACOVA_01247 at 31.340 kb on - strand, within BACOVA_01247 at 31.348 kb on + strand, within BACOVA_01247 at 31.444 kb on + strand, within BACOVA_01247 at 31.473 kb on + strand, within BACOVA_01247 at 31.478 kb on - strand, within BACOVA_01247 at 31.478 kb on - strand, within BACOVA_01247 at 31.481 kb on - strand, within BACOVA_01247 at 31.481 kb on - strand, within BACOVA_01247 at 31.481 kb on - strand, within BACOVA_01247 at 31.485 kb on + strand, within BACOVA_01247 at 31.489 kb on + strand, within BACOVA_01247 at 31.501 kb on + strand, within BACOVA_01247
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 27,620 - +0.7 27,624 - -0.9 27,640 + +0.9 27,640 + -0.2 27,640 + -0.0 27,641 - -0.7 27,643 - +1.4 27,664 + +2.3 27,665 - +0.3 27,673 + +0.7 27,753 + BACOVA_01245 0.12 -0.8 27,754 - BACOVA_01245 0.12 -1.9 27,826 + BACOVA_01245 0.20 +2.9 27,872 + BACOVA_01245 0.25 +0.9 27,872 + BACOVA_01245 0.25 -0.3 27,873 - BACOVA_01245 0.25 -0.2 27,873 - BACOVA_01245 0.25 +1.2 27,873 - BACOVA_01245 0.25 -2.3 27,875 - BACOVA_01245 0.26 -0.8 27,877 + BACOVA_01245 0.26 -1.4 27,877 + BACOVA_01245 0.26 +0.3 27,878 - BACOVA_01245 0.26 -1.1 27,878 - BACOVA_01245 0.26 -0.4 27,878 - BACOVA_01245 0.26 -1.6 27,882 - BACOVA_01245 0.26 +0.3 27,883 + BACOVA_01245 0.26 -0.1 27,884 - BACOVA_01245 0.27 +1.2 27,928 + BACOVA_01245 0.32 +1.5 27,929 - BACOVA_01245 0.32 -0.4 27,929 - BACOVA_01245 0.32 -1.8 27,931 - BACOVA_01245 0.32 +0.1 28,004 - BACOVA_01245 0.40 +0.2 28,081 + BACOVA_01245 0.49 -0.1 28,081 + BACOVA_01245 0.49 +0.0 28,130 - BACOVA_01245 0.54 -0.3 28,152 - BACOVA_01245 0.57 +0.4 28,244 + BACOVA_01245 0.67 -0.7 28,274 + BACOVA_01245 0.71 +1.6 28,274 + BACOVA_01245 0.71 -0.4 28,274 + BACOVA_01245 0.71 +0.1 28,275 - BACOVA_01245 0.71 +1.0 28,275 - BACOVA_01245 0.71 -1.6 28,275 - BACOVA_01245 0.71 -0.3 28,318 + BACOVA_01245 0.76 +0.3 28,361 - BACOVA_01245 0.81 -0.2 28,362 + BACOVA_01245 0.81 -0.1 28,363 - BACOVA_01245 0.81 +1.2 28,363 - BACOVA_01245 0.81 -1.2 28,372 + BACOVA_01245 0.82 +0.2 28,390 - BACOVA_01245 0.84 +1.3 28,453 + -1.2 28,463 + +0.3 28,464 - -1.0 28,565 - -0.7 28,580 - -0.0 28,606 + -1.0 28,606 + -0.1 28,637 - +0.4 28,640 - -1.1 28,643 - +1.9 28,772 - BACOVA_01246 0.12 +0.6 28,784 + BACOVA_01246 0.13 -1.0 28,788 + BACOVA_01246 0.13 -0.3 28,788 + BACOVA_01246 0.13 +1.3 28,789 - BACOVA_01246 0.13 -0.7 28,789 - BACOVA_01246 0.13 -0.0 28,789 - BACOVA_01246 0.13 +1.9 28,789 - BACOVA_01246 0.13 +0.9 28,796 - BACOVA_01246 0.13 -1.9 28,825 - BACOVA_01246 0.15 +0.3 28,972 - BACOVA_01246 0.22 -1.4 29,038 - BACOVA_01246 0.25 -1.0 29,043 - BACOVA_01246 0.26 -0.1 29,122 + BACOVA_01246 0.30 -1.5 29,131 - BACOVA_01246 0.30 +1.9 29,171 - BACOVA_01246 0.32 +0.9 29,222 - BACOVA_01246 0.35 -1.1 29,224 + BACOVA_01246 0.35 +0.0 29,277 + BACOVA_01246 0.38 -0.4 29,366 - BACOVA_01246 0.42 -2.4 29,366 - BACOVA_01246 0.42 -1.9 29,371 - BACOVA_01246 0.42 +1.3 29,372 + BACOVA_01246 0.42 -0.1 29,373 - BACOVA_01246 0.42 +0.2 29,373 - BACOVA_01246 0.42 -0.4 29,380 + BACOVA_01246 0.43 +0.9 29,381 - BACOVA_01246 0.43 +0.9 29,413 + BACOVA_01246 0.45 +0.9 29,413 + BACOVA_01246 0.45 -1.7 29,414 - BACOVA_01246 0.45 -0.8 29,446 - BACOVA_01246 0.46 +0.9 29,493 - BACOVA_01246 0.49 -0.5 29,500 + BACOVA_01246 0.49 -0.5 29,507 + BACOVA_01246 0.49 -1.0 29,507 + BACOVA_01246 0.49 +1.3 29,525 - BACOVA_01246 0.50 +0.1 29,539 - BACOVA_01246 0.51 -0.2 29,582 + BACOVA_01246 0.53 -1.3 29,582 + BACOVA_01246 0.53 +0.1 29,582 + BACOVA_01246 0.53 +1.9 29,583 - BACOVA_01246 0.53 -0.5 29,583 - BACOVA_01246 0.53 -1.7 29,583 - BACOVA_01246 0.53 -1.8 29,583 - BACOVA_01246 0.53 +0.9 29,630 - BACOVA_01246 0.56 -0.3 29,674 + BACOVA_01246 0.58 +0.1 29,674 + BACOVA_01246 0.58 +0.4 29,674 + BACOVA_01246 0.58 -0.4 29,675 - BACOVA_01246 0.58 +0.3 29,677 + BACOVA_01246 0.58 -0.4 29,683 - BACOVA_01246 0.58 -0.1 29,683 - BACOVA_01246 0.58 -0.8 29,705 - BACOVA_01246 0.59 -1.1 29,705 - BACOVA_01246 0.59 -1.7 29,706 + BACOVA_01246 0.59 +0.4 29,706 + BACOVA_01246 0.59 +0.2 29,711 - BACOVA_01246 0.60 +0.9 29,720 - BACOVA_01246 0.60 -0.1 29,723 + BACOVA_01246 0.60 -0.4 29,723 - BACOVA_01246 0.60 +0.2 29,723 - BACOVA_01246 0.60 -1.0 29,759 - BACOVA_01246 0.62 -1.0 29,808 + BACOVA_01246 0.65 -1.1 29,808 + BACOVA_01246 0.65 -2.9 29,808 + BACOVA_01246 0.65 +0.1 29,809 - BACOVA_01246 0.65 +0.1 29,809 - BACOVA_01246 0.65 -1.5 29,812 + BACOVA_01246 0.65 -0.4 29,812 + BACOVA_01246 0.65 +0.4 29,813 - BACOVA_01246 0.65 -2.9 29,813 - BACOVA_01246 0.65 -0.7 29,874 + BACOVA_01246 0.68 +2.1 29,874 + BACOVA_01246 0.68 -0.4 29,891 - BACOVA_01246 0.69 +0.9 29,939 + BACOVA_01246 0.71 +1.3 29,940 - BACOVA_01246 0.71 +0.7 29,950 + BACOVA_01246 0.72 +0.8 29,951 - BACOVA_01246 0.72 -0.1 29,951 - BACOVA_01246 0.72 +0.2 29,986 - BACOVA_01246 0.74 -0.3 29,986 - BACOVA_01246 0.74 -0.7 30,001 + BACOVA_01246 0.74 -0.5 30,002 - BACOVA_01246 0.75 -1.0 30,167 - BACOVA_01246 0.83 +0.2 30,349 - +0.0 30,349 - -0.7 30,376 + +0.6 30,377 - +0.5 30,411 + +0.5 30,414 - +0.4 30,484 + +0.9 30,486 + -0.6 30,488 + +1.2 30,489 - +0.5 30,522 + -0.1 30,529 - +1.2 30,532 - +0.9 30,532 - +0.1 30,595 + -0.8 30,612 + -0.2 30,622 + +0.5 30,622 + +0.6 30,644 - +1.1 30,652 + +0.9 30,724 + BACOVA_01247 0.14 -0.9 30,725 - BACOVA_01247 0.14 -2.9 30,764 + BACOVA_01247 0.17 -0.1 30,793 + BACOVA_01247 0.19 -0.2 30,817 + BACOVA_01247 0.21 -1.3 30,817 + BACOVA_01247 0.21 +0.3 30,839 - BACOVA_01247 0.22 -0.9 30,844 - BACOVA_01247 0.23 -1.4 30,870 + BACOVA_01247 0.24 -0.7 30,870 + BACOVA_01247 0.24 -0.0 30,870 + BACOVA_01247 0.24 +0.4 30,901 + BACOVA_01247 0.27 -0.2 30,922 + BACOVA_01247 0.28 +0.3 30,925 + BACOVA_01247 0.28 +0.8 30,926 - BACOVA_01247 0.28 +1.9 30,927 + BACOVA_01247 0.29 -0.9 30,928 - BACOVA_01247 0.29 -0.4 30,928 - BACOVA_01247 0.29 +2.3 30,956 - BACOVA_01247 0.31 -0.9 30,968 + BACOVA_01247 0.31 -1.1 30,969 - BACOVA_01247 0.32 -0.3 30,969 - BACOVA_01247 0.32 +1.3 30,986 + BACOVA_01247 0.33 +0.4 30,990 + BACOVA_01247 0.33 +0.4 30,990 + BACOVA_01247 0.33 +0.9 30,991 - BACOVA_01247 0.33 -0.1 30,994 + BACOVA_01247 0.33 -1.3 31,026 + BACOVA_01247 0.36 +0.5 31,078 + BACOVA_01247 0.39 +0.5 31,078 + BACOVA_01247 0.39 -1.4 31,078 + BACOVA_01247 0.39 -0.5 31,078 + BACOVA_01247 0.39 -1.1 31,089 + BACOVA_01247 0.40 -1.1 31,089 + BACOVA_01247 0.40 +0.7 31,319 + BACOVA_01247 0.57 +1.3 31,319 + BACOVA_01247 0.57 +0.9 31,319 + BACOVA_01247 0.57 -1.1 31,320 - BACOVA_01247 0.57 -0.1 31,322 - BACOVA_01247 0.57 +0.4 31,322 - BACOVA_01247 0.57 -0.1 31,322 - BACOVA_01247 0.57 -0.6 31,339 + BACOVA_01247 0.58 +0.2 31,340 - BACOVA_01247 0.58 -0.5 31,340 - BACOVA_01247 0.58 +0.2 31,348 + BACOVA_01247 0.59 +0.6 31,444 + BACOVA_01247 0.66 +0.2 31,473 + BACOVA_01247 0.68 +0.0 31,478 - BACOVA_01247 0.68 +1.9 31,478 - BACOVA_01247 0.68 -0.1 31,481 - BACOVA_01247 0.68 +0.9 31,481 - BACOVA_01247 0.68 -0.1 31,481 - BACOVA_01247 0.68 +0.3 31,485 + BACOVA_01247 0.69 -0.7 31,489 + BACOVA_01247 0.69 -0.6 31,501 + BACOVA_01247 0.70 -1.1
Or see this region's nucleotide sequence