Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00598

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00597 and BACOVA_00598 are separated by 169 nucleotidesBACOVA_00598 and BACOVA_00599 are separated by 30 nucleotides BACOVA_00597: BACOVA_00597 - hypothetical protein, at 32,778 to 33,662 _00597 BACOVA_00598: BACOVA_00598 - SNARE-like domain protein, at 33,832 to 34,476 _00598 BACOVA_00599: BACOVA_00599 - tetratricopeptide repeat protein, at 34,507 to 35,958 _00599 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.853 kb on - strandat 32.856 kb on - strandat 32.902 kb on + strand, within BACOVA_00597at 32.921 kb on + strand, within BACOVA_00597at 32.942 kb on + strand, within BACOVA_00597at 32.988 kb on - strand, within BACOVA_00597at 33.011 kb on + strand, within BACOVA_00597at 33.018 kb on - strand, within BACOVA_00597at 33.031 kb on - strand, within BACOVA_00597at 33.041 kb on + strand, within BACOVA_00597at 33.041 kb on + strand, within BACOVA_00597at 33.042 kb on - strand, within BACOVA_00597at 33.099 kb on + strand, within BACOVA_00597at 33.100 kb on - strand, within BACOVA_00597at 33.100 kb on - strand, within BACOVA_00597at 33.111 kb on - strand, within BACOVA_00597at 33.171 kb on + strand, within BACOVA_00597at 33.189 kb on - strand, within BACOVA_00597at 33.189 kb on - strand, within BACOVA_00597at 33.200 kb on + strand, within BACOVA_00597at 33.200 kb on + strand, within BACOVA_00597at 33.248 kb on + strand, within BACOVA_00597at 33.249 kb on - strand, within BACOVA_00597at 33.253 kb on - strand, within BACOVA_00597at 33.268 kb on + strand, within BACOVA_00597at 33.268 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.280 kb on + strand, within BACOVA_00597at 33.281 kb on - strand, within BACOVA_00597at 33.281 kb on - strand, within BACOVA_00597at 33.437 kb on - strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.438 kb on + strand, within BACOVA_00597at 33.439 kb on - strand, within BACOVA_00597at 33.439 kb on - strand, within BACOVA_00597at 33.455 kb on - strand, within BACOVA_00597at 33.487 kb on + strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.488 kb on - strand, within BACOVA_00597at 33.505 kb on + strand, within BACOVA_00597at 33.506 kb on - strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.511 kb on + strand, within BACOVA_00597at 33.522 kb on - strand, within BACOVA_00597at 33.548 kb on + strand, within BACOVA_00597at 33.552 kb on - strand, within BACOVA_00597at 33.565 kb on - strand, within BACOVA_00597at 33.599 kb on + strandat 33.599 kb on + strandat 33.600 kb on - strandat 33.632 kb on - strandat 33.632 kb on - strandat 33.632 kb on - strandat 33.641 kb on - strandat 33.672 kb on - strandat 33.676 kb on - strandat 33.704 kb on - strandat 33.708 kb on + strandat 33.747 kb on + strandat 33.747 kb on + strandat 33.753 kb on - strandat 33.773 kb on + strandat 33.774 kb on - strandat 33.826 kb on + strandat 33.827 kb on - strandat 33.856 kb on - strandat 33.921 kb on - strand, within BACOVA_00598at 33.966 kb on + strand, within BACOVA_00598at 33.998 kb on - strand, within BACOVA_00598at 34.001 kb on - strand, within BACOVA_00598at 34.012 kb on + strand, within BACOVA_00598at 34.012 kb on + strand, within BACOVA_00598at 34.014 kb on + strand, within BACOVA_00598at 34.033 kb on - strand, within BACOVA_00598at 34.035 kb on - strand, within BACOVA_00598at 34.168 kb on + strand, within BACOVA_00598at 34.168 kb on + strand, within BACOVA_00598at 34.223 kb on + strand, within BACOVA_00598at 34.259 kb on + strand, within BACOVA_00598at 34.260 kb on - strand, within BACOVA_00598at 34.288 kb on + strand, within BACOVA_00598at 34.290 kb on + strand, within BACOVA_00598at 34.290 kb on + strand, within BACOVA_00598at 34.291 kb on - strand, within BACOVA_00598at 34.317 kb on + strand, within BACOVA_00598at 34.318 kb on - strand, within BACOVA_00598at 34.427 kb on + strandat 34.452 kb on + strandat 34.797 kb on - strand, within BACOVA_00599at 34.880 kb on - strand, within BACOVA_00599at 34.880 kb on - strand, within BACOVA_00599at 34.961 kb on - strand, within BACOVA_00599at 35.019 kb on - strand, within BACOVA_00599at 35.019 kb on - strand, within BACOVA_00599at 35.019 kb on - strand, within BACOVA_00599at 35.088 kb on - strand, within BACOVA_00599at 35.088 kb on - strand, within BACOVA_00599at 35.223 kb on - strand, within BACOVA_00599at 35.244 kb on - strand, within BACOVA_00599at 35.331 kb on - strand, within BACOVA_00599

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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32,853 - +0.8
32,856 - +0.0
32,902 + BACOVA_00597 0.14 -1.6
32,921 + BACOVA_00597 0.16 +0.4
32,942 + BACOVA_00597 0.19 -0.3
32,988 - BACOVA_00597 0.24 +0.8
33,011 + BACOVA_00597 0.26 +1.1
33,018 - BACOVA_00597 0.27 +1.8
33,031 - BACOVA_00597 0.29 -1.2
33,041 + BACOVA_00597 0.30 +0.8
33,041 + BACOVA_00597 0.30 -1.1
33,042 - BACOVA_00597 0.30 +0.1
33,099 + BACOVA_00597 0.36 -2.0
33,100 - BACOVA_00597 0.36 +0.1
33,100 - BACOVA_00597 0.36 -2.3
33,111 - BACOVA_00597 0.38 -0.9
33,171 + BACOVA_00597 0.44 +0.2
33,189 - BACOVA_00597 0.46 -1.5
33,189 - BACOVA_00597 0.46 +1.1
33,200 + BACOVA_00597 0.48 -0.7
33,200 + BACOVA_00597 0.48 -0.2
33,248 + BACOVA_00597 0.53 +0.0
33,249 - BACOVA_00597 0.53 +0.7
33,253 - BACOVA_00597 0.54 -0.2
33,268 + BACOVA_00597 0.55 +0.3
33,268 + BACOVA_00597 0.55 +0.8
33,280 + BACOVA_00597 0.57 +0.4
33,280 + BACOVA_00597 0.57 +0.8
33,280 + BACOVA_00597 0.57 -0.8
33,281 - BACOVA_00597 0.57 -0.5
33,281 - BACOVA_00597 0.57 +0.2
33,437 - BACOVA_00597 0.74 -1.8
33,438 + BACOVA_00597 0.75 -0.8
33,438 + BACOVA_00597 0.75 -0.3
33,438 + BACOVA_00597 0.75 -0.2
33,439 - BACOVA_00597 0.75 +1.1
33,439 - BACOVA_00597 0.75 +0.2
33,455 - BACOVA_00597 0.76 +0.8
33,487 + BACOVA_00597 0.80 -0.5
33,488 - BACOVA_00597 0.80 +0.6
33,488 - BACOVA_00597 0.80 -2.8
33,488 - BACOVA_00597 0.80 -0.6
33,505 + BACOVA_00597 0.82 +1.0
33,506 - BACOVA_00597 0.82 -0.2
33,511 + BACOVA_00597 0.83 -2.5
33,511 + BACOVA_00597 0.83 +0.3
33,511 + BACOVA_00597 0.83 +1.6
33,511 + BACOVA_00597 0.83 +1.0
33,522 - BACOVA_00597 0.84 -0.5
33,548 + BACOVA_00597 0.87 -0.0
33,552 - BACOVA_00597 0.87 -0.2
33,565 - BACOVA_00597 0.89 -0.0
33,599 + +0.8
33,599 + +0.2
33,600 - +0.4
33,632 - -1.3
33,632 - +1.6
33,632 - -0.2
33,641 - -1.8
33,672 - +2.8
33,676 - -1.1
33,704 - +0.1
33,708 + +0.3
33,747 + -0.7
33,747 + -2.0
33,753 - +1.1
33,773 + -2.6
33,774 - -0.9
33,826 + +1.6
33,827 - +0.6
33,856 - -1.0
33,921 - BACOVA_00598 0.14 -1.5
33,966 + BACOVA_00598 0.21 -0.8
33,998 - BACOVA_00598 0.26 -1.2
34,001 - BACOVA_00598 0.26 -2.0
34,012 + BACOVA_00598 0.28 +0.4
34,012 + BACOVA_00598 0.28 -0.5
34,014 + BACOVA_00598 0.28 -0.8
34,033 - BACOVA_00598 0.31 -0.5
34,035 - BACOVA_00598 0.31 -1.5
34,168 + BACOVA_00598 0.52 -1.5
34,168 + BACOVA_00598 0.52 -1.2
34,223 + BACOVA_00598 0.61 -0.2
34,259 + BACOVA_00598 0.66 -0.8
34,260 - BACOVA_00598 0.66 -1.2
34,288 + BACOVA_00598 0.71 -2.2
34,290 + BACOVA_00598 0.71 -1.2
34,290 + BACOVA_00598 0.71 -1.2
34,291 - BACOVA_00598 0.71 -0.8
34,317 + BACOVA_00598 0.75 -0.2
34,318 - BACOVA_00598 0.75 -1.7
34,427 + -0.8
34,452 + +0.8
34,797 - BACOVA_00599 0.20 -0.4
34,880 - BACOVA_00599 0.26 -2.0
34,880 - BACOVA_00599 0.26 -0.8
34,961 - BACOVA_00599 0.31 +0.8
35,019 - BACOVA_00599 0.35 -2.2
35,019 - BACOVA_00599 0.35 -1.5
35,019 - BACOVA_00599 0.35 +0.8
35,088 - BACOVA_00599 0.40 +0.2
35,088 - BACOVA_00599 0.40 +0.6
35,223 - BACOVA_00599 0.49 -1.5
35,244 - BACOVA_00599 0.51 -1.5
35,331 - BACOVA_00599 0.57 -1.2

Or see this region's nucleotide sequence