Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00428

Experiment: GAM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00426 and BACOVA_00427 are separated by 77 nucleotidesBACOVA_00427 and BACOVA_00428 are separated by 47 nucleotidesBACOVA_00428 and BACOVA_00429 are separated by 6 nucleotides BACOVA_00426: BACOVA_00426 - glycosyl hydrolase family 3 C-terminal domain protein, at 2,552 to 5,131 _00426 BACOVA_00427: BACOVA_00427 - glycosyl hydrolase family 3 N-terminal domain protein, at 5,209 to 5,511 _00427 BACOVA_00428: BACOVA_00428 - hypothetical protein, at 5,559 to 5,834 _00428 BACOVA_00429: BACOVA_00429 - hypothetical protein, at 5,841 to 6,836 _00429 Position (kb) 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 4.596 kb on - strand, within BACOVA_00426at 4.615 kb on + strand, within BACOVA_00426at 4.648 kb on + strand, within BACOVA_00426at 4.732 kb on - strand, within BACOVA_00426at 4.732 kb on - strand, within BACOVA_00426at 4.735 kb on + strand, within BACOVA_00426at 4.817 kb on - strand, within BACOVA_00426at 4.818 kb on + strand, within BACOVA_00426at 4.818 kb on + strand, within BACOVA_00426at 4.818 kb on + strand, within BACOVA_00426at 4.826 kb on + strand, within BACOVA_00426at 4.826 kb on + strand, within BACOVA_00426at 4.827 kb on - strand, within BACOVA_00426at 4.843 kb on + strand, within BACOVA_00426at 4.893 kb on - strandat 5.024 kb on + strandat 5.050 kb on + strandat 5.051 kb on - strandat 5.051 kb on - strandat 5.080 kb on + strandat 5.080 kb on + strandat 5.081 kb on - strandat 5.085 kb on - strandat 5.085 kb on - strandat 5.087 kb on - strandat 5.108 kb on + strandat 5.108 kb on + strandat 5.118 kb on - strandat 5.119 kb on + strandat 5.120 kb on - strandat 5.120 kb on - strandat 5.121 kb on + strandat 5.121 kb on + strandat 5.122 kb on - strandat 5.182 kb on + strandat 5.210 kb on + strandat 5.262 kb on + strand, within BACOVA_00427at 5.263 kb on - strand, within BACOVA_00427at 5.263 kb on - strand, within BACOVA_00427at 5.276 kb on + strand, within BACOVA_00427at 5.290 kb on + strand, within BACOVA_00427at 5.291 kb on - strand, within BACOVA_00427at 5.321 kb on - strand, within BACOVA_00427at 5.324 kb on + strand, within BACOVA_00427at 5.325 kb on - strand, within BACOVA_00427at 5.330 kb on - strand, within BACOVA_00427at 5.332 kb on + strand, within BACOVA_00427at 5.337 kb on + strand, within BACOVA_00427at 5.402 kb on + strand, within BACOVA_00427at 5.403 kb on - strand, within BACOVA_00427at 5.406 kb on + strand, within BACOVA_00427at 5.410 kb on - strand, within BACOVA_00427at 5.437 kb on - strand, within BACOVA_00427at 5.464 kb on - strand, within BACOVA_00427at 5.474 kb on + strand, within BACOVA_00427at 5.476 kb on + strand, within BACOVA_00427at 5.476 kb on + strand, within BACOVA_00427at 5.476 kb on + strand, within BACOVA_00427at 5.476 kb on + strand, within BACOVA_00427at 5.477 kb on - strand, within BACOVA_00427at 5.478 kb on + strand, within BACOVA_00427at 5.478 kb on + strand, within BACOVA_00427at 5.478 kb on + strand, within BACOVA_00427at 5.480 kb on + strand, within BACOVA_00427at 5.480 kb on + strand, within BACOVA_00427at 5.535 kb on + strandat 5.535 kb on + strandat 5.556 kb on + strandat 5.556 kb on + strandat 5.557 kb on - strandat 5.561 kb on - strandat 5.561 kb on - strandat 5.561 kb on - strandat 5.563 kb on - strandat 5.747 kb on + strand, within BACOVA_00428at 5.748 kb on - strand, within BACOVA_00428at 5.748 kb on - strand, within BACOVA_00428at 5.790 kb on - strand, within BACOVA_00428at 5.794 kb on - strand, within BACOVA_00428at 5.794 kb on - strand, within BACOVA_00428at 5.817 kb on + strandat 5.837 kb on + strandat 5.837 kb on + strandat 5.838 kb on - strandat 5.839 kb on + strandat 5.839 kb on + strandat 5.839 kb on + strandat 5.840 kb on - strandat 5.883 kb on - strandat 5.886 kb on - strandat 5.923 kb on + strandat 5.924 kb on - strandat 5.924 kb on - strandat 5.930 kb on + strandat 5.931 kb on - strandat 5.982 kb on - strand, within BACOVA_00429at 6.015 kb on - strand, within BACOVA_00429at 6.017 kb on + strand, within BACOVA_00429at 6.017 kb on + strand, within BACOVA_00429at 6.018 kb on - strand, within BACOVA_00429at 6.037 kb on + strand, within BACOVA_00429at 6.072 kb on + strand, within BACOVA_00429at 6.072 kb on + strand, within BACOVA_00429at 6.072 kb on + strand, within BACOVA_00429at 6.073 kb on - strand, within BACOVA_00429at 6.080 kb on - strand, within BACOVA_00429at 6.080 kb on - strand, within BACOVA_00429at 6.098 kb on + strand, within BACOVA_00429at 6.105 kb on - strand, within BACOVA_00429at 6.203 kb on + strand, within BACOVA_00429at 6.204 kb on - strand, within BACOVA_00429at 6.230 kb on + strand, within BACOVA_00429at 6.230 kb on + strand, within BACOVA_00429at 6.230 kb on + strand, within BACOVA_00429at 6.231 kb on - strand, within BACOVA_00429at 6.232 kb on + strand, within BACOVA_00429at 6.232 kb on + strand, within BACOVA_00429at 6.232 kb on + strand, within BACOVA_00429at 6.233 kb on - strand, within BACOVA_00429at 6.263 kb on - strand, within BACOVA_00429at 6.263 kb on - strand, within BACOVA_00429at 6.289 kb on - strand, within BACOVA_00429at 6.305 kb on + strand, within BACOVA_00429at 6.317 kb on - strand, within BACOVA_00429at 6.345 kb on - strand, within BACOVA_00429at 6.347 kb on + strand, within BACOVA_00429at 6.350 kb on + strand, within BACOVA_00429at 6.359 kb on + strand, within BACOVA_00429at 6.359 kb on + strand, within BACOVA_00429at 6.360 kb on - strand, within BACOVA_00429at 6.360 kb on - strand, within BACOVA_00429at 6.366 kb on - strand, within BACOVA_00429at 6.370 kb on - strand, within BACOVA_00429at 6.374 kb on + strand, within BACOVA_00429at 6.448 kb on + strand, within BACOVA_00429at 6.454 kb on + strand, within BACOVA_00429at 6.455 kb on - strand, within BACOVA_00429at 6.457 kb on + strand, within BACOVA_00429at 6.457 kb on + strand, within BACOVA_00429at 6.458 kb on - strand, within BACOVA_00429at 6.458 kb on - strand, within BACOVA_00429at 6.458 kb on - strand, within BACOVA_00429at 6.467 kb on + strand, within BACOVA_00429at 6.479 kb on + strand, within BACOVA_00429at 6.483 kb on + strand, within BACOVA_00429at 6.483 kb on + strand, within BACOVA_00429at 6.483 kb on + strand, within BACOVA_00429at 6.484 kb on - strand, within BACOVA_00429at 6.484 kb on - strand, within BACOVA_00429at 6.484 kb on - strand, within BACOVA_00429at 6.485 kb on + strand, within BACOVA_00429at 6.485 kb on + strand, within BACOVA_00429at 6.492 kb on + strand, within BACOVA_00429at 6.492 kb on + strand, within BACOVA_00429at 6.493 kb on - strand, within BACOVA_00429at 6.522 kb on - strand, within BACOVA_00429at 6.523 kb on + strand, within BACOVA_00429at 6.524 kb on - strand, within BACOVA_00429at 6.546 kb on - strand, within BACOVA_00429at 6.546 kb on - strand, within BACOVA_00429at 6.623 kb on + strand, within BACOVA_00429at 6.623 kb on + strand, within BACOVA_00429at 6.628 kb on + strand, within BACOVA_00429at 6.660 kb on - strand, within BACOVA_00429at 6.701 kb on + strand, within BACOVA_00429at 6.702 kb on - strand, within BACOVA_00429at 6.743 kb on + strandat 6.744 kb on - strandat 6.781 kb on - strandat 6.795 kb on + strandat 6.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media
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4,596 - BACOVA_00426 0.79 +0.4
4,615 + BACOVA_00426 0.80 +0.5
4,648 + BACOVA_00426 0.81 +0.2
4,732 - BACOVA_00426 0.84 -0.7
4,732 - BACOVA_00426 0.84 +0.8
4,735 + BACOVA_00426 0.85 -1.9
4,817 - BACOVA_00426 0.88 -0.3
4,818 + BACOVA_00426 0.88 -1.1
4,818 + BACOVA_00426 0.88 +0.4
4,818 + BACOVA_00426 0.88 -0.1
4,826 + BACOVA_00426 0.88 +0.3
4,826 + BACOVA_00426 0.88 -0.2
4,827 - BACOVA_00426 0.88 -0.4
4,843 + BACOVA_00426 0.89 +0.6
4,893 - -1.3
5,024 + -0.5
5,050 + -0.1
5,051 - -1.1
5,051 - -1.0
5,080 + +0.9
5,080 + +0.3
5,081 - -0.3
5,085 - +1.4
5,085 - -0.9
5,087 - -1.3
5,108 + -0.6
5,108 + -1.8
5,118 - +0.7
5,119 + -0.3
5,120 - -0.8
5,120 - +1.6
5,121 + +0.2
5,121 + -0.8
5,122 - -1.1
5,182 + -0.7
5,210 + +0.3
5,262 + BACOVA_00427 0.17 -0.3
5,263 - BACOVA_00427 0.18 -0.2
5,263 - BACOVA_00427 0.18 -0.9
5,276 + BACOVA_00427 0.22 -0.8
5,290 + BACOVA_00427 0.27 -1.1
5,291 - BACOVA_00427 0.27 -1.3
5,321 - BACOVA_00427 0.37 -0.1
5,324 + BACOVA_00427 0.38 -0.4
5,325 - BACOVA_00427 0.38 -0.4
5,330 - BACOVA_00427 0.40 -0.4
5,332 + BACOVA_00427 0.41 +0.2
5,337 + BACOVA_00427 0.42 -1.2
5,402 + BACOVA_00427 0.64 -0.8
5,403 - BACOVA_00427 0.64 +0.4
5,406 + BACOVA_00427 0.65 +0.0
5,410 - BACOVA_00427 0.66 +0.6
5,437 - BACOVA_00427 0.75 -1.3
5,464 - BACOVA_00427 0.84 -0.6
5,474 + BACOVA_00427 0.87 -0.4
5,476 + BACOVA_00427 0.88 -1.1
5,476 + BACOVA_00427 0.88 -0.3
5,476 + BACOVA_00427 0.88 -0.7
5,476 + BACOVA_00427 0.88 +0.5
5,477 - BACOVA_00427 0.88 -1.1
5,478 + BACOVA_00427 0.89 +0.8
5,478 + BACOVA_00427 0.89 +1.9
5,478 + BACOVA_00427 0.89 +0.6
5,480 + BACOVA_00427 0.89 +0.1
5,480 + BACOVA_00427 0.89 -1.0
5,535 + +0.9
5,535 + +1.0
5,556 + -1.0
5,556 + -1.2
5,557 - +1.9
5,561 - +0.3
5,561 - -0.9
5,561 - -1.2
5,563 - +0.3
5,747 + BACOVA_00428 0.68 +1.2
5,748 - BACOVA_00428 0.68 +0.9
5,748 - BACOVA_00428 0.68 +0.1
5,790 - BACOVA_00428 0.84 +0.3
5,794 - BACOVA_00428 0.85 +0.2
5,794 - BACOVA_00428 0.85 +1.1
5,817 + +0.0
5,837 + -0.4
5,837 + -0.3
5,838 - -1.0
5,839 + +0.9
5,839 + +0.3
5,839 + +0.2
5,840 - +0.3
5,883 - +0.4
5,886 - +0.3
5,923 + +0.2
5,924 - -1.5
5,924 - -0.0
5,930 + -0.1
5,931 - -0.3
5,982 - BACOVA_00429 0.14 +0.9
6,015 - BACOVA_00429 0.17 -1.0
6,017 + BACOVA_00429 0.18 +0.2
6,017 + BACOVA_00429 0.18 +0.2
6,018 - BACOVA_00429 0.18 -0.9
6,037 + BACOVA_00429 0.20 -1.0
6,072 + BACOVA_00429 0.23 -0.5
6,072 + BACOVA_00429 0.23 +0.0
6,072 + BACOVA_00429 0.23 +0.9
6,073 - BACOVA_00429 0.23 +0.3
6,080 - BACOVA_00429 0.24 -0.9
6,080 - BACOVA_00429 0.24 +1.1
6,098 + BACOVA_00429 0.26 -0.6
6,105 - BACOVA_00429 0.27 -0.4
6,203 + BACOVA_00429 0.36 -0.9
6,204 - BACOVA_00429 0.36 -0.6
6,230 + BACOVA_00429 0.39 -0.7
6,230 + BACOVA_00429 0.39 -0.5
6,230 + BACOVA_00429 0.39 -1.3
6,231 - BACOVA_00429 0.39 -1.7
6,232 + BACOVA_00429 0.39 +0.4
6,232 + BACOVA_00429 0.39 +0.6
6,232 + BACOVA_00429 0.39 +1.3
6,233 - BACOVA_00429 0.39 +1.1
6,263 - BACOVA_00429 0.42 -0.7
6,263 - BACOVA_00429 0.42 -1.1
6,289 - BACOVA_00429 0.45 +0.4
6,305 + BACOVA_00429 0.47 +0.1
6,317 - BACOVA_00429 0.48 -0.7
6,345 - BACOVA_00429 0.51 -0.2
6,347 + BACOVA_00429 0.51 -0.7
6,350 + BACOVA_00429 0.51 +0.2
6,359 + BACOVA_00429 0.52 +0.3
6,359 + BACOVA_00429 0.52 -0.6
6,360 - BACOVA_00429 0.52 -1.7
6,360 - BACOVA_00429 0.52 -1.4
6,366 - BACOVA_00429 0.53 -0.8
6,370 - BACOVA_00429 0.53 +0.3
6,374 + BACOVA_00429 0.54 -0.3
6,448 + BACOVA_00429 0.61 -0.9
6,454 + BACOVA_00429 0.62 -0.7
6,455 - BACOVA_00429 0.62 +0.1
6,457 + BACOVA_00429 0.62 -0.6
6,457 + BACOVA_00429 0.62 +0.2
6,458 - BACOVA_00429 0.62 -1.3
6,458 - BACOVA_00429 0.62 +0.3
6,458 - BACOVA_00429 0.62 +0.6
6,467 + BACOVA_00429 0.63 -0.4
6,479 + BACOVA_00429 0.64 -1.0
6,483 + BACOVA_00429 0.64 +1.2
6,483 + BACOVA_00429 0.64 -0.9
6,483 + BACOVA_00429 0.64 +1.5
6,484 - BACOVA_00429 0.65 +0.0
6,484 - BACOVA_00429 0.65 +0.0
6,484 - BACOVA_00429 0.65 +0.4
6,485 + BACOVA_00429 0.65 -0.5
6,485 + BACOVA_00429 0.65 +0.7
6,492 + BACOVA_00429 0.65 +1.0
6,492 + BACOVA_00429 0.65 +0.0
6,493 - BACOVA_00429 0.65 +0.6
6,522 - BACOVA_00429 0.68 -0.8
6,523 + BACOVA_00429 0.68 +1.6
6,524 - BACOVA_00429 0.69 -1.4
6,546 - BACOVA_00429 0.71 -2.3
6,546 - BACOVA_00429 0.71 +1.1
6,623 + BACOVA_00429 0.79 +0.5
6,623 + BACOVA_00429 0.79 -0.1
6,628 + BACOVA_00429 0.79 -1.4
6,660 - BACOVA_00429 0.82 -1.4
6,701 + BACOVA_00429 0.86 +0.2
6,702 - BACOVA_00429 0.86 -0.1
6,743 + +0.1
6,744 - -0.9
6,781 - -0.8
6,795 + +0.6
6,796 - +0.9

Or see this region's nucleotide sequence