Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04794

Experiment: marine_broth_2216 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04793 and BACOVA_04794 overlap by 20 nucleotidesBACOVA_04794 and BACOVA_04795 are separated by 200 nucleotides BACOVA_04793: BACOVA_04793 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 145,787 to 148,090 _04793 BACOVA_04794: BACOVA_04794 - hypothetical protein, at 148,071 to 149,345 _04794 BACOVA_04795: BACOVA_04795 - site-specific recombinase, phage integrase family, at 149,546 to 150,604 _04795 Position (kb) 148 149 150Strain fitness (log2 ratio) -2 -1 0 1at 147.071 kb on + strand, within BACOVA_04793at 147.151 kb on + strand, within BACOVA_04793at 147.151 kb on + strand, within BACOVA_04793at 147.154 kb on + strand, within BACOVA_04793at 147.171 kb on + strand, within BACOVA_04793at 147.212 kb on + strand, within BACOVA_04793at 147.212 kb on + strand, within BACOVA_04793at 147.212 kb on + strand, within BACOVA_04793at 147.218 kb on + strand, within BACOVA_04793at 147.218 kb on + strand, within BACOVA_04793at 147.248 kb on + strand, within BACOVA_04793at 147.277 kb on + strand, within BACOVA_04793at 147.286 kb on + strand, within BACOVA_04793at 147.302 kb on + strand, within BACOVA_04793at 147.302 kb on + strand, within BACOVA_04793at 147.341 kb on + strand, within BACOVA_04793at 147.344 kb on + strand, within BACOVA_04793at 147.356 kb on + strand, within BACOVA_04793at 147.404 kb on + strand, within BACOVA_04793at 147.484 kb on + strand, within BACOVA_04793at 147.551 kb on + strand, within BACOVA_04793at 147.589 kb on + strand, within BACOVA_04793at 147.589 kb on + strand, within BACOVA_04793at 147.599 kb on - strand, within BACOVA_04793at 147.603 kb on + strand, within BACOVA_04793at 147.603 kb on + strand, within BACOVA_04793at 147.603 kb on + strand, within BACOVA_04793at 147.604 kb on - strand, within BACOVA_04793at 147.611 kb on + strand, within BACOVA_04793at 147.611 kb on + strand, within BACOVA_04793at 147.611 kb on + strand, within BACOVA_04793at 147.640 kb on + strand, within BACOVA_04793at 147.726 kb on + strand, within BACOVA_04793at 147.726 kb on + strand, within BACOVA_04793at 147.730 kb on + strand, within BACOVA_04793at 147.730 kb on + strand, within BACOVA_04793at 147.757 kb on + strand, within BACOVA_04793at 147.763 kb on + strand, within BACOVA_04793at 147.797 kb on - strand, within BACOVA_04793at 147.808 kb on + strand, within BACOVA_04793at 147.868 kb on + strandat 147.901 kb on + strandat 147.901 kb on + strandat 147.961 kb on - strandat 148.003 kb on + strandat 148.007 kb on + strandat 148.007 kb on + strandat 148.007 kb on + strandat 148.007 kb on + strandat 148.008 kb on - strandat 148.008 kb on - strandat 148.008 kb on - strandat 148.055 kb on + strandat 148.056 kb on - strandat 148.069 kb on + strandat 148.072 kb on + strandat 148.076 kb on + strandat 149.169 kb on + strand, within BACOVA_04794at 149.366 kb on - strandat 149.366 kb on - strandat 149.371 kb on - strandat 149.371 kb on - strandat 149.382 kb on - strandat 149.441 kb on + strandat 149.442 kb on - strandat 149.442 kb on - strandat 149.442 kb on - strandat 149.457 kb on + strandat 149.508 kb on - strandat 149.541 kb on - strandat 149.541 kb on - strandat 149.541 kb on - strandat 149.609 kb on + strandat 149.610 kb on - strandat 149.633 kb on + strandat 149.668 kb on + strand, within BACOVA_04795at 149.668 kb on + strand, within BACOVA_04795at 149.669 kb on - strand, within BACOVA_04795at 149.672 kb on + strand, within BACOVA_04795at 149.672 kb on + strand, within BACOVA_04795at 149.672 kb on + strand, within BACOVA_04795at 149.673 kb on - strand, within BACOVA_04795at 149.673 kb on - strand, within BACOVA_04795at 149.673 kb on - strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.676 kb on + strand, within BACOVA_04795at 149.677 kb on - strand, within BACOVA_04795at 149.677 kb on - strand, within BACOVA_04795at 149.677 kb on - strand, within BACOVA_04795at 149.677 kb on - strand, within BACOVA_04795at 149.681 kb on - strand, within BACOVA_04795at 149.705 kb on + strand, within BACOVA_04795at 149.766 kb on + strand, within BACOVA_04795at 149.769 kb on - strand, within BACOVA_04795at 149.796 kb on - strand, within BACOVA_04795at 149.809 kb on + strand, within BACOVA_04795at 149.809 kb on + strand, within BACOVA_04795at 149.929 kb on + strand, within BACOVA_04795at 149.929 kb on + strand, within BACOVA_04795at 149.945 kb on - strand, within BACOVA_04795at 149.954 kb on + strand, within BACOVA_04795at 149.954 kb on + strand, within BACOVA_04795at 149.968 kb on + strand, within BACOVA_04795at 149.969 kb on - strand, within BACOVA_04795at 149.969 kb on - strand, within BACOVA_04795at 149.969 kb on - strand, within BACOVA_04795at 149.969 kb on - strand, within BACOVA_04795at 149.974 kb on + strand, within BACOVA_04795at 149.975 kb on - strand, within BACOVA_04795at 150.026 kb on - strand, within BACOVA_04795at 150.035 kb on + strand, within BACOVA_04795at 150.035 kb on + strand, within BACOVA_04795at 150.036 kb on - strand, within BACOVA_04795at 150.062 kb on + strand, within BACOVA_04795at 150.063 kb on - strand, within BACOVA_04795at 150.066 kb on - strand, within BACOVA_04795at 150.072 kb on - strand, within BACOVA_04795at 150.129 kb on - strand, within BACOVA_04795at 150.211 kb on + strand, within BACOVA_04795at 150.241 kb on - strand, within BACOVA_04795at 150.246 kb on - strand, within BACOVA_04795at 150.268 kb on - strand, within BACOVA_04795at 150.274 kb on + strand, within BACOVA_04795at 150.274 kb on + strand, within BACOVA_04795at 150.274 kb on + strand, within BACOVA_04795at 150.275 kb on - strand, within BACOVA_04795at 150.293 kb on - strand, within BACOVA_04795at 150.319 kb on + strand, within BACOVA_04795at 150.319 kb on + strand, within BACOVA_04795at 150.320 kb on - strand, within BACOVA_04795at 150.322 kb on - strand, within BACOVA_04795at 150.325 kb on + strand, within BACOVA_04795at 150.325 kb on + strand, within BACOVA_04795at 150.325 kb on + strand, within BACOVA_04795at 150.326 kb on - strand, within BACOVA_04795at 150.340 kb on + strand, within BACOVA_04795at 150.340 kb on + strand, within BACOVA_04795

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
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147,071 + BACOVA_04793 0.56 -0.4
147,151 + BACOVA_04793 0.59 -0.5
147,151 + BACOVA_04793 0.59 -1.1
147,154 + BACOVA_04793 0.59 +1.5
147,171 + BACOVA_04793 0.60 +1.5
147,212 + BACOVA_04793 0.62 -0.4
147,212 + BACOVA_04793 0.62 -0.4
147,212 + BACOVA_04793 0.62 -0.2
147,218 + BACOVA_04793 0.62 -0.8
147,218 + BACOVA_04793 0.62 -1.1
147,248 + BACOVA_04793 0.63 +0.3
147,277 + BACOVA_04793 0.65 -0.6
147,286 + BACOVA_04793 0.65 +0.4
147,302 + BACOVA_04793 0.66 -1.2
147,302 + BACOVA_04793 0.66 -1.4
147,341 + BACOVA_04793 0.67 -0.6
147,344 + BACOVA_04793 0.68 -0.5
147,356 + BACOVA_04793 0.68 +0.0
147,404 + BACOVA_04793 0.70 -1.6
147,484 + BACOVA_04793 0.74 +0.0
147,551 + BACOVA_04793 0.77 -0.7
147,589 + BACOVA_04793 0.78 -0.1
147,589 + BACOVA_04793 0.78 -0.2
147,599 - BACOVA_04793 0.79 -2.3
147,603 + BACOVA_04793 0.79 -0.2
147,603 + BACOVA_04793 0.79 +0.2
147,603 + BACOVA_04793 0.79 -0.2
147,604 - BACOVA_04793 0.79 -1.1
147,611 + BACOVA_04793 0.79 -0.7
147,611 + BACOVA_04793 0.79 +0.8
147,611 + BACOVA_04793 0.79 -0.1
147,640 + BACOVA_04793 0.80 -1.1
147,726 + BACOVA_04793 0.84 +0.3
147,726 + BACOVA_04793 0.84 -0.4
147,730 + BACOVA_04793 0.84 +0.4
147,730 + BACOVA_04793 0.84 +0.5
147,757 + BACOVA_04793 0.86 -1.1
147,763 + BACOVA_04793 0.86 -1.9
147,797 - BACOVA_04793 0.87 -0.4
147,808 + BACOVA_04793 0.88 -0.5
147,868 + -0.7
147,901 + +0.5
147,901 + -0.7
147,961 - -1.9
148,003 + +1.0
148,007 + +0.0
148,007 + -1.0
148,007 + -1.4
148,007 + +1.0
148,008 - -2.6
148,008 - -0.4
148,008 - -1.4
148,055 + -1.1
148,056 - +0.9
148,069 + +0.8
148,072 + +0.3
148,076 + -0.1
149,169 + BACOVA_04794 0.86 +1.5
149,366 - -0.9
149,366 - -1.1
149,371 - -0.6
149,371 - +0.6
149,382 - -0.7
149,441 + +0.6
149,442 - +1.3
149,442 - +0.1
149,442 - -0.9
149,457 + -0.7
149,508 - -0.0
149,541 - -0.3
149,541 - +0.3
149,541 - -0.7
149,609 + -1.1
149,610 - -0.1
149,633 + +1.6
149,668 + BACOVA_04795 0.12 -0.1
149,668 + BACOVA_04795 0.12 +0.0
149,669 - BACOVA_04795 0.12 -1.6
149,672 + BACOVA_04795 0.12 -1.2
149,672 + BACOVA_04795 0.12 -0.2
149,672 + BACOVA_04795 0.12 +0.8
149,673 - BACOVA_04795 0.12 +1.4
149,673 - BACOVA_04795 0.12 +0.1
149,673 - BACOVA_04795 0.12 +0.4
149,676 + BACOVA_04795 0.12 +0.7
149,676 + BACOVA_04795 0.12 +0.7
149,676 + BACOVA_04795 0.12 -0.9
149,676 + BACOVA_04795 0.12 -0.4
149,676 + BACOVA_04795 0.12 -0.4
149,676 + BACOVA_04795 0.12 +1.1
149,676 + BACOVA_04795 0.12 +0.4
149,676 + BACOVA_04795 0.12 -1.4
149,676 + BACOVA_04795 0.12 -0.9
149,677 - BACOVA_04795 0.12 +0.1
149,677 - BACOVA_04795 0.12 -1.9
149,677 - BACOVA_04795 0.12 -0.4
149,677 - BACOVA_04795 0.12 -0.6
149,681 - BACOVA_04795 0.13 +0.8
149,705 + BACOVA_04795 0.15 -0.3
149,766 + BACOVA_04795 0.21 +0.1
149,769 - BACOVA_04795 0.21 -1.2
149,796 - BACOVA_04795 0.24 -0.2
149,809 + BACOVA_04795 0.25 +0.2
149,809 + BACOVA_04795 0.25 +1.2
149,929 + BACOVA_04795 0.36 +0.9
149,929 + BACOVA_04795 0.36 +1.2
149,945 - BACOVA_04795 0.38 -2.4
149,954 + BACOVA_04795 0.39 +0.9
149,954 + BACOVA_04795 0.39 +0.7
149,968 + BACOVA_04795 0.40 +0.3
149,969 - BACOVA_04795 0.40 -0.3
149,969 - BACOVA_04795 0.40 +0.4
149,969 - BACOVA_04795 0.40 +0.5
149,969 - BACOVA_04795 0.40 -2.2
149,974 + BACOVA_04795 0.40 +0.1
149,975 - BACOVA_04795 0.41 +0.2
150,026 - BACOVA_04795 0.45 -0.1
150,035 + BACOVA_04795 0.46 +1.1
150,035 + BACOVA_04795 0.46 +0.1
150,036 - BACOVA_04795 0.46 +0.3
150,062 + BACOVA_04795 0.49 -1.1
150,063 - BACOVA_04795 0.49 +1.1
150,066 - BACOVA_04795 0.49 -0.7
150,072 - BACOVA_04795 0.50 +0.4
150,129 - BACOVA_04795 0.55 -0.4
150,211 + BACOVA_04795 0.63 -0.4
150,241 - BACOVA_04795 0.66 -0.5
150,246 - BACOVA_04795 0.66 -0.1
150,268 - BACOVA_04795 0.68 -0.3
150,274 + BACOVA_04795 0.69 -0.3
150,274 + BACOVA_04795 0.69 -1.9
150,274 + BACOVA_04795 0.69 -1.6
150,275 - BACOVA_04795 0.69 -0.4
150,293 - BACOVA_04795 0.71 +1.6
150,319 + BACOVA_04795 0.73 -0.8
150,319 + BACOVA_04795 0.73 -0.7
150,320 - BACOVA_04795 0.73 +1.2
150,322 - BACOVA_04795 0.73 +0.5
150,325 + BACOVA_04795 0.74 -1.1
150,325 + BACOVA_04795 0.74 -0.8
150,325 + BACOVA_04795 0.74 -0.0
150,326 - BACOVA_04795 0.74 -1.1
150,340 + BACOVA_04795 0.75 -0.4
150,340 + BACOVA_04795 0.75 -0.6

Or see this region's nucleotide sequence