Experiment: marine_broth_2216 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04032 and BACOVA_04033 are separated by 63 nucleotides BACOVA_04033 and BACOVA_04034 are separated by 63 nucleotides BACOVA_04034 and BACOVA_04035 are separated by 96 nucleotides BACOVA_04035 and BACOVA_04036 are separated by 79 nucleotides
BACOVA_04032: BACOVA_04032 - hypothetical protein, at 364,469 to 365,716
_04032
BACOVA_04033: BACOVA_04033 - hypothetical protein, at 365,780 to 365,908
_04033
BACOVA_04034: BACOVA_04034 - putative YigZ family protein, at 365,972 to 366,589
_04034
BACOVA_04035: BACOVA_04035 - hypothetical protein, at 366,686 to 367,435
_04035
BACOVA_04036: BACOVA_04036 - HpaII restriction endonuclease, at 367,515 to 368,600
_04036
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 364.979 kb on + strand, within BACOVA_04032 at 365.015 kb on - strand, within BACOVA_04032 at 365.044 kb on + strand, within BACOVA_04032 at 365.056 kb on + strand, within BACOVA_04032 at 365.057 kb on - strand, within BACOVA_04032 at 365.089 kb on + strand, within BACOVA_04032 at 365.186 kb on + strand, within BACOVA_04032 at 365.234 kb on + strand, within BACOVA_04032 at 365.306 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.333 kb on + strand, within BACOVA_04032 at 365.334 kb on - strand, within BACOVA_04032 at 365.334 kb on - strand, within BACOVA_04032 at 365.377 kb on + strand, within BACOVA_04032 at 365.411 kb on + strand, within BACOVA_04032 at 365.411 kb on + strand, within BACOVA_04032 at 365.412 kb on - strand, within BACOVA_04032 at 365.412 kb on - strand, within BACOVA_04032 at 365.413 kb on + strand, within BACOVA_04032 at 365.414 kb on - strand, within BACOVA_04032 at 365.428 kb on + strand, within BACOVA_04032 at 365.447 kb on - strand, within BACOVA_04032 at 365.485 kb on + strand, within BACOVA_04032 at 365.486 kb on - strand, within BACOVA_04032 at 365.608 kb on + strand at 365.608 kb on + strand at 365.609 kb on - strand at 365.627 kb on - strand at 365.635 kb on + strand at 365.644 kb on + strand at 365.644 kb on + strand at 365.645 kb on - strand at 365.647 kb on + strand at 365.648 kb on - strand at 365.648 kb on - strand at 365.702 kb on - strand at 365.704 kb on + strand at 365.709 kb on + strand at 365.768 kb on + strand at 365.769 kb on - strand at 365.810 kb on + strand, within BACOVA_04033 at 365.811 kb on - strand, within BACOVA_04033 at 365.841 kb on + strand, within BACOVA_04033 at 365.841 kb on + strand, within BACOVA_04033 at 365.842 kb on - strand, within BACOVA_04033 at 365.844 kb on - strand, within BACOVA_04033 at 365.844 kb on - strand, within BACOVA_04033 at 365.919 kb on - strand at 365.919 kb on - strand at 365.987 kb on - strand at 365.990 kb on + strand at 365.991 kb on - strand at 365.991 kb on - strand at 365.992 kb on + strand at 366.020 kb on - strand at 366.024 kb on - strand at 366.024 kb on - strand at 366.053 kb on - strand, within BACOVA_04034 at 366.084 kb on + strand, within BACOVA_04034 at 366.104 kb on + strand, within BACOVA_04034 at 366.117 kb on - strand, within BACOVA_04034 at 366.117 kb on - strand, within BACOVA_04034 at 366.120 kb on - strand, within BACOVA_04034 at 366.136 kb on - strand, within BACOVA_04034 at 366.136 kb on - strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.146 kb on + strand, within BACOVA_04034 at 366.147 kb on - strand, within BACOVA_04034 at 366.148 kb on + strand, within BACOVA_04034 at 366.149 kb on - strand, within BACOVA_04034 at 366.221 kb on - strand, within BACOVA_04034 at 366.258 kb on + strand, within BACOVA_04034 at 366.259 kb on - strand, within BACOVA_04034 at 366.365 kb on - strand, within BACOVA_04034 at 366.415 kb on + strand, within BACOVA_04034 at 366.415 kb on + strand, within BACOVA_04034 at 366.473 kb on + strand, within BACOVA_04034 at 366.487 kb on + strand, within BACOVA_04034 at 366.523 kb on + strand, within BACOVA_04034 at 366.524 kb on - strand, within BACOVA_04034 at 366.580 kb on + strand at 366.588 kb on - strand at 366.591 kb on + strand at 366.592 kb on - strand at 366.600 kb on - strand at 366.605 kb on + strand at 366.609 kb on - strand at 366.611 kb on + strand at 366.636 kb on + strand at 366.681 kb on + strand at 366.739 kb on + strand at 366.740 kb on - strand at 366.832 kb on + strand, within BACOVA_04035 at 366.851 kb on - strand, within BACOVA_04035 at 366.860 kb on - strand, within BACOVA_04035 at 366.893 kb on + strand, within BACOVA_04035 at 366.893 kb on + strand, within BACOVA_04035 at 366.965 kb on + strand, within BACOVA_04035 at 366.966 kb on - strand, within BACOVA_04035 at 366.996 kb on - strand, within BACOVA_04035 at 367.012 kb on - strand, within BACOVA_04035 at 367.060 kb on + strand, within BACOVA_04035 at 367.061 kb on - strand, within BACOVA_04035 at 367.087 kb on - strand, within BACOVA_04035 at 367.087 kb on - strand, within BACOVA_04035 at 367.097 kb on + strand, within BACOVA_04035 at 367.099 kb on + strand, within BACOVA_04035 at 367.169 kb on - strand, within BACOVA_04035 at 367.169 kb on - strand, within BACOVA_04035 at 367.235 kb on + strand, within BACOVA_04035 at 367.269 kb on - strand, within BACOVA_04035 at 367.303 kb on - strand, within BACOVA_04035 at 367.347 kb on + strand, within BACOVA_04035 at 367.381 kb on + strand at 367.382 kb on - strand at 367.383 kb on + strand at 367.384 kb on - strand at 367.384 kb on - strand at 367.384 kb on - strand at 367.413 kb on + strand at 367.446 kb on + strand at 367.447 kb on - strand at 367.450 kb on + strand at 367.466 kb on + strand at 367.477 kb on + strand at 367.492 kb on - strand at 367.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media remove 364,979 + BACOVA_04032 0.41 -1.0 365,015 - BACOVA_04032 0.44 +0.8 365,044 + BACOVA_04032 0.46 +0.3 365,056 + BACOVA_04032 0.47 -0.3 365,057 - BACOVA_04032 0.47 -1.1 365,089 + BACOVA_04032 0.50 -0.2 365,186 + BACOVA_04032 0.57 -0.8 365,234 + BACOVA_04032 0.61 -0.7 365,306 + BACOVA_04032 0.67 +2.0 365,333 + BACOVA_04032 0.69 +0.1 365,333 + BACOVA_04032 0.69 -1.4 365,333 + BACOVA_04032 0.69 +0.2 365,333 + BACOVA_04032 0.69 +1.1 365,334 - BACOVA_04032 0.69 +0.1 365,334 - BACOVA_04032 0.69 +0.3 365,377 + BACOVA_04032 0.73 +0.2 365,411 + BACOVA_04032 0.75 -1.0 365,411 + BACOVA_04032 0.75 -1.8 365,412 - BACOVA_04032 0.76 +0.3 365,412 - BACOVA_04032 0.76 -1.3 365,413 + BACOVA_04032 0.76 -0.0 365,414 - BACOVA_04032 0.76 -0.0 365,428 + BACOVA_04032 0.77 -0.0 365,447 - BACOVA_04032 0.78 +0.7 365,485 + BACOVA_04032 0.81 -0.3 365,486 - BACOVA_04032 0.81 +1.1 365,608 + -1.7 365,608 + -1.7 365,609 - -1.3 365,627 - -1.3 365,635 + -0.3 365,644 + +0.0 365,644 + -0.2 365,645 - +0.1 365,647 + +0.3 365,648 - -0.0 365,648 - +0.1 365,702 - +1.1 365,704 + -0.3 365,709 + +0.6 365,768 + +1.0 365,769 - +0.4 365,810 + BACOVA_04033 0.23 +1.1 365,811 - BACOVA_04033 0.24 +0.2 365,841 + BACOVA_04033 0.47 -1.3 365,841 + BACOVA_04033 0.47 +0.4 365,842 - BACOVA_04033 0.48 +2.7 365,844 - BACOVA_04033 0.50 +0.7 365,844 - BACOVA_04033 0.50 +0.9 365,919 - +0.7 365,919 - -1.0 365,987 - -0.3 365,990 + +2.3 365,991 - -0.1 365,991 - +0.9 365,992 + +1.7 366,020 - +0.9 366,024 - +0.3 366,024 - -0.2 366,053 - BACOVA_04034 0.13 +0.7 366,084 + BACOVA_04034 0.18 -0.9 366,104 + BACOVA_04034 0.21 -1.7 366,117 - BACOVA_04034 0.23 +0.5 366,117 - BACOVA_04034 0.23 +0.1 366,120 - BACOVA_04034 0.24 +1.1 366,136 - BACOVA_04034 0.27 +0.3 366,136 - BACOVA_04034 0.27 -0.3 366,146 + BACOVA_04034 0.28 -1.1 366,146 + BACOVA_04034 0.28 -0.6 366,146 + BACOVA_04034 0.28 -1.7 366,146 + BACOVA_04034 0.28 +0.7 366,147 - BACOVA_04034 0.28 -0.9 366,148 + BACOVA_04034 0.28 +0.3 366,149 - BACOVA_04034 0.29 +0.3 366,221 - BACOVA_04034 0.40 -0.2 366,258 + BACOVA_04034 0.46 -0.1 366,259 - BACOVA_04034 0.46 -1.4 366,365 - BACOVA_04034 0.64 -0.1 366,415 + BACOVA_04034 0.72 -1.3 366,415 + BACOVA_04034 0.72 +0.1 366,473 + BACOVA_04034 0.81 +0.7 366,487 + BACOVA_04034 0.83 +0.1 366,523 + BACOVA_04034 0.89 -1.3 366,524 - BACOVA_04034 0.89 -0.4 366,580 + -0.3 366,588 - -0.1 366,591 + -0.7 366,592 - -0.9 366,600 - -0.9 366,605 + -1.3 366,609 - -0.2 366,611 + +0.1 366,636 + +0.9 366,681 + +0.7 366,739 + +1.6 366,740 - -0.2 366,832 + BACOVA_04035 0.19 -0.1 366,851 - BACOVA_04035 0.22 +0.7 366,860 - BACOVA_04035 0.23 -0.4 366,893 + BACOVA_04035 0.28 +1.0 366,893 + BACOVA_04035 0.28 -1.3 366,965 + BACOVA_04035 0.37 +0.1 366,966 - BACOVA_04035 0.37 +0.4 366,996 - BACOVA_04035 0.41 -0.3 367,012 - BACOVA_04035 0.43 +0.7 367,060 + BACOVA_04035 0.50 +0.8 367,061 - BACOVA_04035 0.50 +0.1 367,087 - BACOVA_04035 0.53 +0.4 367,087 - BACOVA_04035 0.53 +0.7 367,097 + BACOVA_04035 0.55 +0.3 367,099 + BACOVA_04035 0.55 +1.0 367,169 - BACOVA_04035 0.64 +0.8 367,169 - BACOVA_04035 0.64 -0.9 367,235 + BACOVA_04035 0.73 +1.3 367,269 - BACOVA_04035 0.78 +0.9 367,303 - BACOVA_04035 0.82 +1.3 367,347 + BACOVA_04035 0.88 +0.3 367,381 + +0.7 367,382 - -0.2 367,383 + +1.4 367,384 - +1.6 367,384 - +0.3 367,384 - +0.9 367,413 + -0.1 367,446 + +2.8 367,447 - +0.8 367,450 + +0.7 367,466 + -0.7 367,477 + +1.3 367,492 - -1.4 367,513 - -0.3
Or see this region's nucleotide sequence