Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02873

Experiment: marine_broth_2216 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02872 and BACOVA_02873 are separated by 124 nucleotidesBACOVA_02873 and BACOVA_02874 are separated by 14 nucleotides BACOVA_02872: BACOVA_02872 - transcriptional regulator, AraC family, at 361,354 to 362,364 _02872 BACOVA_02873: BACOVA_02873 - efflux transporter, RND family, MFP subunit, at 362,489 to 363,595 _02873 BACOVA_02874: BACOVA_02874 - RND transporter, HAE1 family, at 363,610 to 366,789 _02874 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 361.500 kb on + strand, within BACOVA_02872at 361.586 kb on + strand, within BACOVA_02872at 361.607 kb on + strand, within BACOVA_02872at 361.626 kb on + strand, within BACOVA_02872at 361.626 kb on + strand, within BACOVA_02872at 361.626 kb on + strand, within BACOVA_02872at 361.626 kb on + strand, within BACOVA_02872at 361.670 kb on + strand, within BACOVA_02872at 361.775 kb on + strand, within BACOVA_02872at 361.775 kb on + strand, within BACOVA_02872at 361.816 kb on + strand, within BACOVA_02872at 361.832 kb on - strand, within BACOVA_02872at 361.902 kb on + strand, within BACOVA_02872at 361.903 kb on - strand, within BACOVA_02872at 361.914 kb on + strand, within BACOVA_02872at 361.938 kb on + strand, within BACOVA_02872at 361.938 kb on + strand, within BACOVA_02872at 361.944 kb on + strand, within BACOVA_02872at 361.945 kb on - strand, within BACOVA_02872at 361.988 kb on + strand, within BACOVA_02872at 361.988 kb on + strand, within BACOVA_02872at 361.989 kb on - strand, within BACOVA_02872at 361.989 kb on - strand, within BACOVA_02872at 362.022 kb on + strand, within BACOVA_02872at 362.140 kb on - strand, within BACOVA_02872at 362.145 kb on + strand, within BACOVA_02872at 362.145 kb on + strand, within BACOVA_02872at 362.146 kb on - strand, within BACOVA_02872at 362.148 kb on + strand, within BACOVA_02872at 362.195 kb on - strand, within BACOVA_02872at 362.199 kb on - strand, within BACOVA_02872at 362.234 kb on - strand, within BACOVA_02872at 362.247 kb on + strand, within BACOVA_02872at 362.247 kb on + strand, within BACOVA_02872at 362.248 kb on - strand, within BACOVA_02872at 362.327 kb on - strandat 362.375 kb on - strandat 362.376 kb on + strandat 362.377 kb on - strandat 362.380 kb on - strandat 362.407 kb on + strandat 362.408 kb on - strandat 362.488 kb on + strandat 362.494 kb on + strandat 362.494 kb on + strandat 362.495 kb on - strandat 362.495 kb on - strandat 362.499 kb on + strandat 362.540 kb on - strandat 362.598 kb on - strandat 362.598 kb on - strandat 362.604 kb on + strand, within BACOVA_02873at 362.613 kb on + strand, within BACOVA_02873at 362.627 kb on - strand, within BACOVA_02873at 362.645 kb on + strand, within BACOVA_02873at 362.658 kb on + strand, within BACOVA_02873at 362.659 kb on - strand, within BACOVA_02873at 362.680 kb on + strand, within BACOVA_02873at 362.680 kb on + strand, within BACOVA_02873at 362.681 kb on - strand, within BACOVA_02873at 362.684 kb on + strand, within BACOVA_02873at 362.740 kb on - strand, within BACOVA_02873at 362.780 kb on + strand, within BACOVA_02873at 362.780 kb on + strand, within BACOVA_02873at 362.856 kb on - strand, within BACOVA_02873at 362.877 kb on - strand, within BACOVA_02873at 362.877 kb on - strand, within BACOVA_02873at 362.877 kb on - strand, within BACOVA_02873at 362.927 kb on + strand, within BACOVA_02873at 362.997 kb on - strand, within BACOVA_02873at 363.030 kb on + strand, within BACOVA_02873at 363.031 kb on - strand, within BACOVA_02873at 363.031 kb on - strand, within BACOVA_02873at 363.063 kb on + strand, within BACOVA_02873at 363.064 kb on - strand, within BACOVA_02873at 363.074 kb on - strand, within BACOVA_02873at 363.092 kb on - strand, within BACOVA_02873at 363.113 kb on - strand, within BACOVA_02873at 363.116 kb on + strand, within BACOVA_02873at 363.117 kb on - strand, within BACOVA_02873at 363.117 kb on - strand, within BACOVA_02873at 363.168 kb on - strand, within BACOVA_02873at 363.226 kb on + strand, within BACOVA_02873at 363.227 kb on - strand, within BACOVA_02873at 363.227 kb on - strand, within BACOVA_02873at 363.237 kb on - strand, within BACOVA_02873at 363.377 kb on + strand, within BACOVA_02873at 363.379 kb on + strand, within BACOVA_02873at 363.427 kb on + strand, within BACOVA_02873at 363.438 kb on + strand, within BACOVA_02873at 363.438 kb on + strand, within BACOVA_02873at 363.439 kb on - strand, within BACOVA_02873at 363.442 kb on + strand, within BACOVA_02873at 363.443 kb on - strand, within BACOVA_02873at 363.443 kb on - strand, within BACOVA_02873at 363.589 kb on + strandat 363.594 kb on - strandat 363.594 kb on - strandat 363.685 kb on - strandat 363.715 kb on + strandat 363.716 kb on - strandat 363.740 kb on + strandat 363.741 kb on - strandat 363.742 kb on + strandat 363.742 kb on + strandat 363.746 kb on + strandat 363.747 kb on - strandat 363.841 kb on + strandat 363.841 kb on + strandat 363.841 kb on + strandat 363.842 kb on - strandat 363.842 kb on - strandat 363.842 kb on - strandat 363.842 kb on - strandat 363.876 kb on + strandat 363.881 kb on + strandat 363.882 kb on - strandat 363.949 kb on + strand, within BACOVA_02874at 364.156 kb on + strand, within BACOVA_02874at 364.156 kb on + strand, within BACOVA_02874at 364.156 kb on + strand, within BACOVA_02874at 364.156 kb on + strand, within BACOVA_02874at 364.157 kb on - strand, within BACOVA_02874at 364.157 kb on - strand, within BACOVA_02874at 364.161 kb on + strand, within BACOVA_02874at 364.161 kb on + strand, within BACOVA_02874at 364.162 kb on - strand, within BACOVA_02874at 364.167 kb on + strand, within BACOVA_02874at 364.199 kb on - strand, within BACOVA_02874at 364.222 kb on - strand, within BACOVA_02874at 364.380 kb on - strand, within BACOVA_02874at 364.468 kb on + strand, within BACOVA_02874at 364.469 kb on - strand, within BACOVA_02874at 364.470 kb on + strand, within BACOVA_02874at 364.470 kb on + strand, within BACOVA_02874at 364.470 kb on + strand, within BACOVA_02874at 364.471 kb on - strand, within BACOVA_02874at 364.473 kb on + strand, within BACOVA_02874

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
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361,500 + BACOVA_02872 0.14 -0.2
361,586 + BACOVA_02872 0.23 +0.5
361,607 + BACOVA_02872 0.25 -0.0
361,626 + BACOVA_02872 0.27 -0.0
361,626 + BACOVA_02872 0.27 +0.1
361,626 + BACOVA_02872 0.27 -0.5
361,626 + BACOVA_02872 0.27 -0.0
361,670 + BACOVA_02872 0.31 -0.5
361,775 + BACOVA_02872 0.42 -2.3
361,775 + BACOVA_02872 0.42 -1.2
361,816 + BACOVA_02872 0.46 -0.1
361,832 - BACOVA_02872 0.47 +0.9
361,902 + BACOVA_02872 0.54 +0.3
361,903 - BACOVA_02872 0.54 +0.7
361,914 + BACOVA_02872 0.55 +0.2
361,938 + BACOVA_02872 0.58 -0.2
361,938 + BACOVA_02872 0.58 +0.2
361,944 + BACOVA_02872 0.58 -0.4
361,945 - BACOVA_02872 0.58 -0.7
361,988 + BACOVA_02872 0.63 +1.6
361,988 + BACOVA_02872 0.63 +0.8
361,989 - BACOVA_02872 0.63 +0.2
361,989 - BACOVA_02872 0.63 -0.1
362,022 + BACOVA_02872 0.66 -1.8
362,140 - BACOVA_02872 0.78 -1.2
362,145 + BACOVA_02872 0.78 -0.3
362,145 + BACOVA_02872 0.78 -0.6
362,146 - BACOVA_02872 0.78 -0.6
362,148 + BACOVA_02872 0.79 -0.0
362,195 - BACOVA_02872 0.83 -1.2
362,199 - BACOVA_02872 0.84 -0.1
362,234 - BACOVA_02872 0.87 -0.1
362,247 + BACOVA_02872 0.88 +0.0
362,247 + BACOVA_02872 0.88 +0.4
362,248 - BACOVA_02872 0.88 -0.2
362,327 - -0.9
362,375 - +1.1
362,376 + -0.3
362,377 - +0.8
362,380 - +1.0
362,407 + -0.5
362,408 - +0.6
362,488 + +0.1
362,494 + -0.1
362,494 + -0.0
362,495 - -0.0
362,495 - +0.5
362,499 + -0.2
362,540 - -0.0
362,598 - -0.5
362,598 - -0.8
362,604 + BACOVA_02873 0.10 +1.6
362,613 + BACOVA_02873 0.11 -0.3
362,627 - BACOVA_02873 0.12 +0.6
362,645 + BACOVA_02873 0.14 +0.1
362,658 + BACOVA_02873 0.15 -1.2
362,659 - BACOVA_02873 0.15 -0.6
362,680 + BACOVA_02873 0.17 -0.3
362,680 + BACOVA_02873 0.17 -0.2
362,681 - BACOVA_02873 0.17 +0.8
362,684 + BACOVA_02873 0.18 -0.1
362,740 - BACOVA_02873 0.23 +0.7
362,780 + BACOVA_02873 0.26 -0.1
362,780 + BACOVA_02873 0.26 -1.2
362,856 - BACOVA_02873 0.33 -0.4
362,877 - BACOVA_02873 0.35 -0.6
362,877 - BACOVA_02873 0.35 +0.2
362,877 - BACOVA_02873 0.35 +2.0
362,927 + BACOVA_02873 0.40 -0.9
362,997 - BACOVA_02873 0.46 -0.4
363,030 + BACOVA_02873 0.49 +0.5
363,031 - BACOVA_02873 0.49 -0.6
363,031 - BACOVA_02873 0.49 +0.3
363,063 + BACOVA_02873 0.52 +0.1
363,064 - BACOVA_02873 0.52 +0.4
363,074 - BACOVA_02873 0.53 -1.1
363,092 - BACOVA_02873 0.54 +0.4
363,113 - BACOVA_02873 0.56 +0.3
363,116 + BACOVA_02873 0.57 +2.0
363,117 - BACOVA_02873 0.57 +0.4
363,117 - BACOVA_02873 0.57 +0.6
363,168 - BACOVA_02873 0.61 +0.5
363,226 + BACOVA_02873 0.67 -0.0
363,227 - BACOVA_02873 0.67 -0.0
363,227 - BACOVA_02873 0.67 -0.6
363,237 - BACOVA_02873 0.68 +0.1
363,377 + BACOVA_02873 0.80 -1.6
363,379 + BACOVA_02873 0.80 +1.0
363,427 + BACOVA_02873 0.85 -0.0
363,438 + BACOVA_02873 0.86 -0.6
363,438 + BACOVA_02873 0.86 +0.2
363,439 - BACOVA_02873 0.86 -1.0
363,442 + BACOVA_02873 0.86 -0.2
363,443 - BACOVA_02873 0.86 -1.1
363,443 - BACOVA_02873 0.86 +0.3
363,589 + -1.1
363,594 - -2.1
363,594 - -0.1
363,685 - -0.7
363,715 + -0.2
363,716 - +0.1
363,740 + +0.4
363,741 - -0.6
363,742 + +0.3
363,742 + -0.8
363,746 + -0.0
363,747 - -0.5
363,841 + +0.9
363,841 + +0.1
363,841 + +0.7
363,842 - +0.4
363,842 - -0.2
363,842 - +0.1
363,842 - +1.1
363,876 + -0.7
363,881 + -2.3
363,882 - -0.7
363,949 + BACOVA_02874 0.11 -0.4
364,156 + BACOVA_02874 0.17 -0.2
364,156 + BACOVA_02874 0.17 +1.3
364,156 + BACOVA_02874 0.17 +0.2
364,156 + BACOVA_02874 0.17 +0.4
364,157 - BACOVA_02874 0.17 -1.1
364,157 - BACOVA_02874 0.17 -0.0
364,161 + BACOVA_02874 0.17 -0.2
364,161 + BACOVA_02874 0.17 -0.8
364,162 - BACOVA_02874 0.17 -0.2
364,167 + BACOVA_02874 0.18 -1.0
364,199 - BACOVA_02874 0.19 -0.8
364,222 - BACOVA_02874 0.19 -0.9
364,380 - BACOVA_02874 0.24 -0.1
364,468 + BACOVA_02874 0.27 -1.2
364,469 - BACOVA_02874 0.27 -0.3
364,470 + BACOVA_02874 0.27 +0.4
364,470 + BACOVA_02874 0.27 +0.6
364,470 + BACOVA_02874 0.27 +0.9
364,471 - BACOVA_02874 0.27 -0.3
364,473 + BACOVA_02874 0.27 +0.4

Or see this region's nucleotide sequence