Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02516

Experiment: marine_broth_2216 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02514 and BACOVA_02515 are separated by 213 nucleotidesBACOVA_02515 and BACOVA_02516 are separated by 206 nucleotidesBACOVA_02516 and BACOVA_02517 are separated by 128 nucleotides BACOVA_02514: BACOVA_02514 - hypothetical protein, at 284,888 to 285,052 _02514 BACOVA_02515: BACOVA_02515 - hypothetical protein, at 285,266 to 285,841 _02515 BACOVA_02516: BACOVA_02516 - hypothetical protein, at 286,048 to 286,851 _02516 BACOVA_02517: BACOVA_02517 - glutamate--ammonia ligase, catalytic domain protein, at 286,980 to 288,482 _02517 Position (kb) 286 287Strain fitness (log2 ratio) -2 -1 0 1 2at 285.139 kb on + strandat 285.144 kb on + strandat 285.145 kb on - strandat 285.167 kb on + strandat 285.176 kb on - strandat 285.184 kb on + strandat 285.200 kb on + strandat 285.265 kb on - strandat 285.267 kb on + strandat 285.267 kb on + strandat 285.295 kb on + strandat 285.333 kb on - strand, within BACOVA_02515at 285.355 kb on - strand, within BACOVA_02515at 285.355 kb on - strand, within BACOVA_02515at 285.364 kb on - strand, within BACOVA_02515at 285.364 kb on - strand, within BACOVA_02515at 285.388 kb on - strand, within BACOVA_02515at 285.454 kb on + strand, within BACOVA_02515at 285.458 kb on + strand, within BACOVA_02515at 285.458 kb on + strand, within BACOVA_02515at 285.506 kb on - strand, within BACOVA_02515at 285.506 kb on - strand, within BACOVA_02515at 285.550 kb on - strand, within BACOVA_02515at 285.586 kb on + strand, within BACOVA_02515at 285.587 kb on - strand, within BACOVA_02515at 285.587 kb on - strand, within BACOVA_02515at 285.589 kb on + strand, within BACOVA_02515at 285.590 kb on - strand, within BACOVA_02515at 285.642 kb on + strand, within BACOVA_02515at 285.643 kb on - strand, within BACOVA_02515at 285.643 kb on - strand, within BACOVA_02515at 285.647 kb on + strand, within BACOVA_02515at 285.648 kb on - strand, within BACOVA_02515at 285.654 kb on - strand, within BACOVA_02515at 285.658 kb on + strand, within BACOVA_02515at 285.690 kb on + strand, within BACOVA_02515at 285.749 kb on + strand, within BACOVA_02515at 285.749 kb on + strand, within BACOVA_02515at 285.750 kb on - strand, within BACOVA_02515at 285.750 kb on - strand, within BACOVA_02515at 285.755 kb on + strand, within BACOVA_02515at 285.755 kb on + strand, within BACOVA_02515at 285.756 kb on - strand, within BACOVA_02515at 285.756 kb on - strand, within BACOVA_02515at 285.822 kb on - strandat 285.854 kb on - strandat 285.854 kb on - strandat 285.855 kb on + strandat 285.856 kb on - strandat 285.856 kb on - strandat 285.856 kb on - strandat 285.906 kb on - strandat 285.906 kb on - strandat 285.906 kb on - strandat 285.935 kb on - strandat 285.937 kb on + strandat 285.941 kb on + strandat 286.013 kb on + strandat 286.016 kb on - strandat 286.055 kb on - strandat 286.062 kb on - strandat 286.062 kb on - strandat 286.064 kb on + strandat 286.064 kb on + strandat 286.085 kb on + strandat 286.086 kb on - strandat 286.145 kb on - strand, within BACOVA_02516at 286.183 kb on + strand, within BACOVA_02516at 286.183 kb on + strand, within BACOVA_02516at 286.183 kb on + strand, within BACOVA_02516at 286.184 kb on - strand, within BACOVA_02516at 286.219 kb on - strand, within BACOVA_02516at 286.277 kb on + strand, within BACOVA_02516at 286.277 kb on + strand, within BACOVA_02516at 286.277 kb on + strand, within BACOVA_02516at 286.329 kb on - strand, within BACOVA_02516at 286.346 kb on - strand, within BACOVA_02516at 286.367 kb on - strand, within BACOVA_02516at 286.367 kb on - strand, within BACOVA_02516at 286.367 kb on - strand, within BACOVA_02516at 286.453 kb on - strand, within BACOVA_02516at 286.468 kb on + strand, within BACOVA_02516at 286.469 kb on - strand, within BACOVA_02516at 286.500 kb on + strand, within BACOVA_02516at 286.516 kb on + strand, within BACOVA_02516at 286.533 kb on + strand, within BACOVA_02516at 286.538 kb on - strand, within BACOVA_02516at 286.557 kb on - strand, within BACOVA_02516at 286.584 kb on + strand, within BACOVA_02516at 286.686 kb on - strand, within BACOVA_02516at 286.706 kb on - strand, within BACOVA_02516at 286.708 kb on - strand, within BACOVA_02516at 286.728 kb on + strand, within BACOVA_02516at 286.799 kb on + strandat 286.800 kb on - strandat 286.854 kb on + strandat 286.864 kb on - strandat 286.889 kb on + strandat 286.951 kb on - strandat 286.956 kb on + strandat 286.956 kb on + strandat 286.979 kb on + strandat 286.994 kb on - strandat 287.100 kb on - strandat 287.105 kb on + strandat 287.167 kb on - strand, within BACOVA_02517at 287.167 kb on - strand, within BACOVA_02517at 287.250 kb on + strand, within BACOVA_02517at 287.251 kb on - strand, within BACOVA_02517at 287.254 kb on + strand, within BACOVA_02517at 287.255 kb on - strand, within BACOVA_02517at 287.255 kb on - strand, within BACOVA_02517at 287.312 kb on + strand, within BACOVA_02517at 287.313 kb on - strand, within BACOVA_02517at 287.313 kb on - strand, within BACOVA_02517at 287.442 kb on + strand, within BACOVA_02517at 287.443 kb on - strand, within BACOVA_02517at 287.445 kb on + strand, within BACOVA_02517at 287.446 kb on - strand, within BACOVA_02517at 287.446 kb on - strand, within BACOVA_02517at 287.463 kb on - strand, within BACOVA_02517at 287.469 kb on - strand, within BACOVA_02517at 287.519 kb on + strand, within BACOVA_02517at 287.546 kb on + strand, within BACOVA_02517at 287.546 kb on + strand, within BACOVA_02517at 287.546 kb on + strand, within BACOVA_02517at 287.578 kb on + strand, within BACOVA_02517at 287.579 kb on - strand, within BACOVA_02517at 287.579 kb on - strand, within BACOVA_02517at 287.623 kb on - strand, within BACOVA_02517at 287.625 kb on - strand, within BACOVA_02517at 287.625 kb on - strand, within BACOVA_02517at 287.629 kb on - strand, within BACOVA_02517at 287.629 kb on - strand, within BACOVA_02517at 287.723 kb on + strand, within BACOVA_02517at 287.723 kb on + strand, within BACOVA_02517at 287.734 kb on - strand, within BACOVA_02517

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
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285,139 + -1.0
285,144 + -1.7
285,145 - -1.4
285,167 + +0.2
285,176 - +1.1
285,184 + +0.3
285,200 + -0.7
285,265 - -0.6
285,267 + -0.4
285,267 + +0.2
285,295 + -1.5
285,333 - BACOVA_02515 0.12 +0.6
285,355 - BACOVA_02515 0.15 +0.6
285,355 - BACOVA_02515 0.15 +0.6
285,364 - BACOVA_02515 0.17 +0.0
285,364 - BACOVA_02515 0.17 -0.6
285,388 - BACOVA_02515 0.21 +0.4
285,454 + BACOVA_02515 0.33 -1.9
285,458 + BACOVA_02515 0.33 -0.6
285,458 + BACOVA_02515 0.33 +0.6
285,506 - BACOVA_02515 0.42 +0.8
285,506 - BACOVA_02515 0.42 +0.6
285,550 - BACOVA_02515 0.49 -0.9
285,586 + BACOVA_02515 0.56 +0.1
285,587 - BACOVA_02515 0.56 +0.5
285,587 - BACOVA_02515 0.56 +0.9
285,589 + BACOVA_02515 0.56 -1.7
285,590 - BACOVA_02515 0.56 -0.4
285,642 + BACOVA_02515 0.65 +0.7
285,643 - BACOVA_02515 0.65 +0.6
285,643 - BACOVA_02515 0.65 -0.0
285,647 + BACOVA_02515 0.66 +1.1
285,648 - BACOVA_02515 0.66 +0.7
285,654 - BACOVA_02515 0.67 +0.1
285,658 + BACOVA_02515 0.68 +0.3
285,690 + BACOVA_02515 0.74 +0.9
285,749 + BACOVA_02515 0.84 +0.6
285,749 + BACOVA_02515 0.84 +1.2
285,750 - BACOVA_02515 0.84 -0.4
285,750 - BACOVA_02515 0.84 -0.0
285,755 + BACOVA_02515 0.85 +0.1
285,755 + BACOVA_02515 0.85 -0.2
285,756 - BACOVA_02515 0.85 +0.8
285,756 - BACOVA_02515 0.85 -1.6
285,822 - +0.2
285,854 - -0.2
285,854 - +0.7
285,855 + -0.4
285,856 - -1.4
285,856 - +1.4
285,856 - +2.1
285,906 - -0.1
285,906 - -0.9
285,906 - +0.6
285,935 - +0.1
285,937 + +0.3
285,941 + -0.4
286,013 + -0.4
286,016 - -0.3
286,055 - -1.1
286,062 - -1.0
286,062 - -0.4
286,064 + -0.2
286,064 + -1.4
286,085 + -0.8
286,086 - +1.1
286,145 - BACOVA_02516 0.12 +0.0
286,183 + BACOVA_02516 0.17 +1.6
286,183 + BACOVA_02516 0.17 -0.2
286,183 + BACOVA_02516 0.17 +0.3
286,184 - BACOVA_02516 0.17 -0.4
286,219 - BACOVA_02516 0.21 +0.6
286,277 + BACOVA_02516 0.28 -0.8
286,277 + BACOVA_02516 0.28 +1.6
286,277 + BACOVA_02516 0.28 +0.0
286,329 - BACOVA_02516 0.35 -1.0
286,346 - BACOVA_02516 0.37 +0.2
286,367 - BACOVA_02516 0.40 +0.5
286,367 - BACOVA_02516 0.40 +0.0
286,367 - BACOVA_02516 0.40 -0.5
286,453 - BACOVA_02516 0.50 +0.2
286,468 + BACOVA_02516 0.52 +0.4
286,469 - BACOVA_02516 0.52 +1.4
286,500 + BACOVA_02516 0.56 +1.0
286,516 + BACOVA_02516 0.58 +0.5
286,533 + BACOVA_02516 0.60 +0.5
286,538 - BACOVA_02516 0.61 +0.8
286,557 - BACOVA_02516 0.63 +0.9
286,584 + BACOVA_02516 0.67 +0.0
286,686 - BACOVA_02516 0.79 +2.2
286,706 - BACOVA_02516 0.82 +0.0
286,708 - BACOVA_02516 0.82 +0.7
286,728 + BACOVA_02516 0.85 -2.3
286,799 + +0.2
286,800 - -0.8
286,854 + -1.2
286,864 - -0.8
286,889 + -0.5
286,951 - -0.5
286,956 + +0.9
286,956 + -2.2
286,979 + +0.6
286,994 - -0.7
287,100 - +1.0
287,105 + -1.5
287,167 - BACOVA_02517 0.12 +0.0
287,167 - BACOVA_02517 0.12 -0.4
287,250 + BACOVA_02517 0.18 -2.4
287,251 - BACOVA_02517 0.18 +1.5
287,254 + BACOVA_02517 0.18 +0.5
287,255 - BACOVA_02517 0.18 -1.3
287,255 - BACOVA_02517 0.18 +0.8
287,312 + BACOVA_02517 0.22 +1.6
287,313 - BACOVA_02517 0.22 -0.6
287,313 - BACOVA_02517 0.22 -0.4
287,442 + BACOVA_02517 0.31 +0.1
287,443 - BACOVA_02517 0.31 -1.0
287,445 + BACOVA_02517 0.31 -0.1
287,446 - BACOVA_02517 0.31 -1.0
287,446 - BACOVA_02517 0.31 +0.6
287,463 - BACOVA_02517 0.32 -0.4
287,469 - BACOVA_02517 0.33 -0.6
287,519 + BACOVA_02517 0.36 -0.6
287,546 + BACOVA_02517 0.38 -1.5
287,546 + BACOVA_02517 0.38 +0.4
287,546 + BACOVA_02517 0.38 +1.4
287,578 + BACOVA_02517 0.40 +0.3
287,579 - BACOVA_02517 0.40 +0.2
287,579 - BACOVA_02517 0.40 -0.1
287,623 - BACOVA_02517 0.43 +0.0
287,625 - BACOVA_02517 0.43 -0.2
287,625 - BACOVA_02517 0.43 +1.2
287,629 - BACOVA_02517 0.43 -0.2
287,629 - BACOVA_02517 0.43 -0.2
287,723 + BACOVA_02517 0.49 +0.8
287,723 + BACOVA_02517 0.49 -0.3
287,734 - BACOVA_02517 0.50 -0.0

Or see this region's nucleotide sequence