Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00508

Experiment: marine_broth_2216 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00506 and BACOVA_00507 are separated by 46 nucleotidesBACOVA_00507 and BACOVA_00508 overlap by 4 nucleotidesBACOVA_00508 and BACOVA_00509 are separated by 34 nucleotides BACOVA_00506: BACOVA_00506 - Dyp-type peroxidase family protein, at 1,983 to 2,933 _00506 BACOVA_00507: BACOVA_00507 - 6-phosphogluconolactonase, at 2,980 to 3,711 _00507 BACOVA_00508: BACOVA_00508 - glucose-6-phosphate dehydrogenase, at 3,708 to 5,204 _00508 BACOVA_00509: BACOVA_00509 - phosphogluconate dehydrogenase (decarboxylating), at 5,239 to 6,765 _00509 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.735 kb on + strand, within BACOVA_00506at 2.735 kb on + strand, within BACOVA_00506at 2.736 kb on - strand, within BACOVA_00506at 2.772 kb on - strand, within BACOVA_00506at 2.772 kb on - strand, within BACOVA_00506at 2.811 kb on + strand, within BACOVA_00506at 2.842 kb on - strandat 2.846 kb on + strandat 2.904 kb on - strandat 2.924 kb on - strandat 2.971 kb on - strandat 2.981 kb on + strandat 2.981 kb on + strandat 2.981 kb on + strandat 2.982 kb on - strandat 2.998 kb on - strandat 3.011 kb on + strandat 3.027 kb on + strandat 3.034 kb on - strandat 3.044 kb on - strandat 3.068 kb on + strand, within BACOVA_00507at 3.068 kb on + strand, within BACOVA_00507at 3.069 kb on - strand, within BACOVA_00507at 3.069 kb on - strand, within BACOVA_00507at 3.123 kb on + strand, within BACOVA_00507at 3.153 kb on - strand, within BACOVA_00507at 3.227 kb on + strand, within BACOVA_00507at 3.227 kb on + strand, within BACOVA_00507at 3.228 kb on - strand, within BACOVA_00507at 3.228 kb on - strand, within BACOVA_00507at 3.231 kb on + strand, within BACOVA_00507at 3.231 kb on + strand, within BACOVA_00507at 3.307 kb on + strand, within BACOVA_00507at 3.307 kb on + strand, within BACOVA_00507at 3.307 kb on + strand, within BACOVA_00507at 3.309 kb on + strand, within BACOVA_00507at 3.359 kb on - strand, within BACOVA_00507at 3.416 kb on - strand, within BACOVA_00507at 3.433 kb on - strand, within BACOVA_00507at 3.470 kb on + strand, within BACOVA_00507at 3.471 kb on - strand, within BACOVA_00507at 3.474 kb on + strand, within BACOVA_00507at 3.475 kb on - strand, within BACOVA_00507at 3.552 kb on + strand, within BACOVA_00507at 3.553 kb on - strand, within BACOVA_00507at 3.554 kb on + strand, within BACOVA_00507at 3.568 kb on + strand, within BACOVA_00507at 3.595 kb on - strand, within BACOVA_00507at 3.595 kb on - strand, within BACOVA_00507at 3.662 kb on - strandat 3.712 kb on - strandat 3.746 kb on + strandat 3.829 kb on + strandat 3.897 kb on + strand, within BACOVA_00508at 3.915 kb on - strand, within BACOVA_00508at 3.919 kb on - strand, within BACOVA_00508at 3.939 kb on - strand, within BACOVA_00508at 3.961 kb on + strand, within BACOVA_00508at 4.128 kb on - strand, within BACOVA_00508at 4.128 kb on - strand, within BACOVA_00508at 4.216 kb on + strand, within BACOVA_00508at 4.217 kb on - strand, within BACOVA_00508at 4.268 kb on + strand, within BACOVA_00508at 4.268 kb on + strand, within BACOVA_00508at 4.269 kb on - strand, within BACOVA_00508at 4.269 kb on - strand, within BACOVA_00508at 4.269 kb on - strand, within BACOVA_00508at 4.269 kb on - strand, within BACOVA_00508at 4.325 kb on + strand, within BACOVA_00508at 4.326 kb on - strand, within BACOVA_00508at 4.326 kb on - strand, within BACOVA_00508at 4.340 kb on + strand, within BACOVA_00508at 4.340 kb on + strand, within BACOVA_00508at 4.340 kb on + strand, within BACOVA_00508at 4.341 kb on - strand, within BACOVA_00508at 4.342 kb on + strand, within BACOVA_00508at 4.342 kb on + strand, within BACOVA_00508at 4.359 kb on - strand, within BACOVA_00508at 4.402 kb on + strand, within BACOVA_00508at 4.592 kb on - strand, within BACOVA_00508at 4.592 kb on - strand, within BACOVA_00508at 4.595 kb on + strand, within BACOVA_00508at 4.595 kb on + strand, within BACOVA_00508at 4.717 kb on + strand, within BACOVA_00508at 4.718 kb on - strand, within BACOVA_00508at 4.797 kb on - strand, within BACOVA_00508at 4.827 kb on + strand, within BACOVA_00508at 4.859 kb on - strand, within BACOVA_00508at 4.859 kb on - strand, within BACOVA_00508at 4.882 kb on - strand, within BACOVA_00508at 4.957 kb on + strand, within BACOVA_00508at 4.960 kb on + strand, within BACOVA_00508at 4.960 kb on + strand, within BACOVA_00508at 5.025 kb on + strand, within BACOVA_00508at 5.026 kb on - strand, within BACOVA_00508at 5.026 kb on - strand, within BACOVA_00508at 5.035 kb on - strand, within BACOVA_00508at 5.037 kb on + strand, within BACOVA_00508at 5.037 kb on + strand, within BACOVA_00508at 5.038 kb on - strand, within BACOVA_00508at 5.039 kb on + strand, within BACOVA_00508at 5.039 kb on + strand, within BACOVA_00508at 5.040 kb on - strand, within BACOVA_00508at 5.041 kb on + strand, within BACOVA_00508at 5.042 kb on - strand, within BACOVA_00508at 5.042 kb on - strand, within BACOVA_00508at 5.050 kb on + strand, within BACOVA_00508at 5.051 kb on - strand, within BACOVA_00508at 5.054 kb on + strand, within BACOVA_00508at 5.066 kb on - strandat 5.066 kb on - strandat 5.122 kb on + strandat 5.207 kb on + strandat 5.228 kb on + strandat 5.228 kb on + strandat 5.230 kb on + strandat 5.230 kb on + strandat 5.249 kb on + strandat 5.250 kb on - strandat 5.265 kb on + strandat 5.348 kb on + strandat 5.408 kb on + strand, within BACOVA_00509at 5.513 kb on + strand, within BACOVA_00509at 5.514 kb on - strand, within BACOVA_00509at 5.535 kb on + strand, within BACOVA_00509at 5.581 kb on + strand, within BACOVA_00509at 5.582 kb on - strand, within BACOVA_00509at 5.711 kb on + strand, within BACOVA_00509at 5.711 kb on + strand, within BACOVA_00509at 5.748 kb on + strand, within BACOVA_00509at 5.748 kb on + strand, within BACOVA_00509at 5.751 kb on + strand, within BACOVA_00509at 5.751 kb on + strand, within BACOVA_00509at 5.752 kb on - strand, within BACOVA_00509at 5.752 kb on - strand, within BACOVA_00509at 5.752 kb on - strand, within BACOVA_00509at 5.753 kb on + strand, within BACOVA_00509at 5.753 kb on + strand, within BACOVA_00509at 5.753 kb on + strand, within BACOVA_00509at 5.753 kb on + strand, within BACOVA_00509at 5.754 kb on - strand, within BACOVA_00509at 5.756 kb on - strand, within BACOVA_00509at 5.757 kb on + strand, within BACOVA_00509at 5.757 kb on + strand, within BACOVA_00509at 5.758 kb on - strand, within BACOVA_00509at 5.767 kb on - strand, within BACOVA_00509at 5.767 kb on - strand, within BACOVA_00509at 5.767 kb on - strand, within BACOVA_00509at 5.935 kb on - strand, within BACOVA_00509at 5.945 kb on + strand, within BACOVA_00509at 5.964 kb on + strand, within BACOVA_00509at 6.087 kb on - strand, within BACOVA_00509at 6.109 kb on - strand, within BACOVA_00509

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media
remove
2,735 + BACOVA_00506 0.79 -0.7
2,735 + BACOVA_00506 0.79 +0.1
2,736 - BACOVA_00506 0.79 +0.3
2,772 - BACOVA_00506 0.83 +0.6
2,772 - BACOVA_00506 0.83 -0.4
2,811 + BACOVA_00506 0.87 -0.5
2,842 - -0.6
2,846 + -1.1
2,904 - -1.4
2,924 - -0.7
2,971 - +0.3
2,981 + -0.4
2,981 + +1.3
2,981 + -0.9
2,982 - -0.8
2,998 - +0.2
3,011 + -0.5
3,027 + -0.1
3,034 - +0.0
3,044 - +0.2
3,068 + BACOVA_00507 0.12 +0.4
3,068 + BACOVA_00507 0.12 +1.0
3,069 - BACOVA_00507 0.12 +0.8
3,069 - BACOVA_00507 0.12 +1.8
3,123 + BACOVA_00507 0.20 -0.2
3,153 - BACOVA_00507 0.24 +0.0
3,227 + BACOVA_00507 0.34 -0.0
3,227 + BACOVA_00507 0.34 +1.3
3,228 - BACOVA_00507 0.34 +0.5
3,228 - BACOVA_00507 0.34 +0.4
3,231 + BACOVA_00507 0.34 +0.6
3,231 + BACOVA_00507 0.34 +1.5
3,307 + BACOVA_00507 0.45 +0.1
3,307 + BACOVA_00507 0.45 +0.2
3,307 + BACOVA_00507 0.45 +0.4
3,309 + BACOVA_00507 0.45 +0.5
3,359 - BACOVA_00507 0.52 -0.1
3,416 - BACOVA_00507 0.60 +0.4
3,433 - BACOVA_00507 0.62 -1.4
3,470 + BACOVA_00507 0.67 +1.0
3,471 - BACOVA_00507 0.67 -0.1
3,474 + BACOVA_00507 0.67 +0.3
3,475 - BACOVA_00507 0.68 +0.5
3,552 + BACOVA_00507 0.78 +0.5
3,553 - BACOVA_00507 0.78 -0.5
3,554 + BACOVA_00507 0.78 +0.4
3,568 + BACOVA_00507 0.80 -0.2
3,595 - BACOVA_00507 0.84 +0.7
3,595 - BACOVA_00507 0.84 +1.1
3,662 - -0.2
3,712 - +0.3
3,746 + +0.4
3,829 + -0.5
3,897 + BACOVA_00508 0.13 -0.1
3,915 - BACOVA_00508 0.14 -1.4
3,919 - BACOVA_00508 0.14 -2.2
3,939 - BACOVA_00508 0.15 -0.9
3,961 + BACOVA_00508 0.17 +0.6
4,128 - BACOVA_00508 0.28 +0.6
4,128 - BACOVA_00508 0.28 +0.6
4,216 + BACOVA_00508 0.34 +0.1
4,217 - BACOVA_00508 0.34 +0.1
4,268 + BACOVA_00508 0.37 +0.4
4,268 + BACOVA_00508 0.37 +1.2
4,269 - BACOVA_00508 0.37 -0.8
4,269 - BACOVA_00508 0.37 -0.8
4,269 - BACOVA_00508 0.37 -0.3
4,269 - BACOVA_00508 0.37 -0.7
4,325 + BACOVA_00508 0.41 -0.8
4,326 - BACOVA_00508 0.41 +0.2
4,326 - BACOVA_00508 0.41 -0.5
4,340 + BACOVA_00508 0.42 +1.1
4,340 + BACOVA_00508 0.42 -0.0
4,340 + BACOVA_00508 0.42 +0.2
4,341 - BACOVA_00508 0.42 +1.1
4,342 + BACOVA_00508 0.42 +0.1
4,342 + BACOVA_00508 0.42 +0.5
4,359 - BACOVA_00508 0.43 -0.6
4,402 + BACOVA_00508 0.46 +0.7
4,592 - BACOVA_00508 0.59 +0.6
4,592 - BACOVA_00508 0.59 -1.4
4,595 + BACOVA_00508 0.59 -0.1
4,595 + BACOVA_00508 0.59 +0.2
4,717 + BACOVA_00508 0.67 -0.0
4,718 - BACOVA_00508 0.67 +0.4
4,797 - BACOVA_00508 0.73 +0.6
4,827 + BACOVA_00508 0.75 -0.5
4,859 - BACOVA_00508 0.77 +0.2
4,859 - BACOVA_00508 0.77 -0.0
4,882 - BACOVA_00508 0.78 +0.1
4,957 + BACOVA_00508 0.83 +0.5
4,960 + BACOVA_00508 0.84 -0.2
4,960 + BACOVA_00508 0.84 +0.2
5,025 + BACOVA_00508 0.88 +0.3
5,026 - BACOVA_00508 0.88 -0.6
5,026 - BACOVA_00508 0.88 +1.2
5,035 - BACOVA_00508 0.89 +0.7
5,037 + BACOVA_00508 0.89 +0.4
5,037 + BACOVA_00508 0.89 +0.0
5,038 - BACOVA_00508 0.89 -0.4
5,039 + BACOVA_00508 0.89 +0.6
5,039 + BACOVA_00508 0.89 +1.2
5,040 - BACOVA_00508 0.89 +1.6
5,041 + BACOVA_00508 0.89 +0.6
5,042 - BACOVA_00508 0.89 +0.3
5,042 - BACOVA_00508 0.89 +0.7
5,050 + BACOVA_00508 0.90 -1.2
5,051 - BACOVA_00508 0.90 -0.7
5,054 + BACOVA_00508 0.90 +0.6
5,066 - -0.2
5,066 - +0.9
5,122 + -0.1
5,207 + +0.6
5,228 + +0.9
5,228 + -0.1
5,230 + +0.3
5,230 + +0.1
5,249 + +1.3
5,250 - +0.4
5,265 + +0.3
5,348 + +0.2
5,408 + BACOVA_00509 0.11 -0.4
5,513 + BACOVA_00509 0.18 -0.5
5,514 - BACOVA_00509 0.18 +0.6
5,535 + BACOVA_00509 0.19 -0.1
5,581 + BACOVA_00509 0.22 -1.1
5,582 - BACOVA_00509 0.22 -1.2
5,711 + BACOVA_00509 0.31 -0.4
5,711 + BACOVA_00509 0.31 +0.1
5,748 + BACOVA_00509 0.33 -0.2
5,748 + BACOVA_00509 0.33 +0.9
5,751 + BACOVA_00509 0.34 +1.2
5,751 + BACOVA_00509 0.34 +0.3
5,752 - BACOVA_00509 0.34 +0.6
5,752 - BACOVA_00509 0.34 -0.4
5,752 - BACOVA_00509 0.34 +0.1
5,753 + BACOVA_00509 0.34 +0.6
5,753 + BACOVA_00509 0.34 +0.7
5,753 + BACOVA_00509 0.34 +0.4
5,753 + BACOVA_00509 0.34 +0.5
5,754 - BACOVA_00509 0.34 +0.4
5,756 - BACOVA_00509 0.34 +1.4
5,757 + BACOVA_00509 0.34 -2.8
5,757 + BACOVA_00509 0.34 +0.9
5,758 - BACOVA_00509 0.34 -0.5
5,767 - BACOVA_00509 0.35 +0.2
5,767 - BACOVA_00509 0.35 -0.2
5,767 - BACOVA_00509 0.35 +0.6
5,935 - BACOVA_00509 0.46 -0.6
5,945 + BACOVA_00509 0.46 -0.8
5,964 + BACOVA_00509 0.47 +0.5
6,087 - BACOVA_00509 0.56 +0.2
6,109 - BACOVA_00509 0.57 +0.2

Or see this region's nucleotide sequence