Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05148

Experiment: LB 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05147 and BACOVA_05148 are separated by 18 nucleotidesBACOVA_05148 and BACOVA_05149 are separated by 19 nucleotides BACOVA_05147: BACOVA_05147 - hypothetical protein, at 624,781 to 625,872 _05147 BACOVA_05148: BACOVA_05148 - SusD family protein, at 625,891 to 627,453 _05148 BACOVA_05149: BACOVA_05149 - TonB-linked outer membrane protein, SusC/RagA family, at 627,473 to 630,955 _05149 Position (kb) 625 626 627 628Strain fitness (log2 ratio) -2 -1 0 1 2 3at 624.894 kb on + strand, within BACOVA_05147at 624.894 kb on + strand, within BACOVA_05147at 624.919 kb on + strand, within BACOVA_05147at 624.933 kb on + strand, within BACOVA_05147at 624.937 kb on - strand, within BACOVA_05147at 624.988 kb on - strand, within BACOVA_05147at 625.004 kb on - strand, within BACOVA_05147at 625.062 kb on + strand, within BACOVA_05147at 625.065 kb on + strand, within BACOVA_05147at 625.111 kb on - strand, within BACOVA_05147at 625.215 kb on + strand, within BACOVA_05147at 625.239 kb on + strand, within BACOVA_05147at 625.252 kb on + strand, within BACOVA_05147at 625.272 kb on + strand, within BACOVA_05147at 625.328 kb on + strand, within BACOVA_05147at 625.328 kb on + strand, within BACOVA_05147at 625.363 kb on + strand, within BACOVA_05147at 625.405 kb on + strand, within BACOVA_05147at 625.410 kb on - strand, within BACOVA_05147at 625.410 kb on - strand, within BACOVA_05147at 625.413 kb on - strand, within BACOVA_05147at 625.458 kb on - strand, within BACOVA_05147at 625.466 kb on + strand, within BACOVA_05147at 625.467 kb on - strand, within BACOVA_05147at 625.472 kb on + strand, within BACOVA_05147at 625.473 kb on - strand, within BACOVA_05147at 625.483 kb on + strand, within BACOVA_05147at 625.519 kb on + strand, within BACOVA_05147at 625.519 kb on + strand, within BACOVA_05147at 625.519 kb on + strand, within BACOVA_05147at 625.520 kb on - strand, within BACOVA_05147at 625.521 kb on + strand, within BACOVA_05147at 625.522 kb on - strand, within BACOVA_05147at 625.539 kb on + strand, within BACOVA_05147at 625.544 kb on + strand, within BACOVA_05147at 625.545 kb on - strand, within BACOVA_05147at 625.644 kb on + strand, within BACOVA_05147at 625.650 kb on + strand, within BACOVA_05147at 625.651 kb on - strand, within BACOVA_05147at 625.652 kb on + strand, within BACOVA_05147at 625.652 kb on + strand, within BACOVA_05147at 625.658 kb on - strand, within BACOVA_05147at 625.784 kb on + strandat 625.785 kb on - strandat 625.813 kb on + strandat 625.822 kb on + strandat 625.822 kb on + strandat 625.823 kb on - strandat 625.829 kb on + strandat 625.829 kb on + strandat 625.829 kb on + strandat 625.832 kb on - strandat 625.888 kb on + strandat 625.889 kb on - strandat 625.949 kb on - strandat 625.977 kb on + strandat 625.978 kb on - strandat 625.978 kb on - strandat 625.978 kb on - strandat 625.978 kb on - strandat 625.981 kb on + strandat 625.984 kb on + strandat 625.984 kb on + strandat 626.041 kb on + strandat 626.065 kb on + strand, within BACOVA_05148at 626.065 kb on + strand, within BACOVA_05148at 626.130 kb on + strand, within BACOVA_05148at 626.130 kb on + strand, within BACOVA_05148at 626.164 kb on + strand, within BACOVA_05148at 626.164 kb on + strand, within BACOVA_05148at 626.180 kb on + strand, within BACOVA_05148at 626.181 kb on - strand, within BACOVA_05148at 626.182 kb on + strand, within BACOVA_05148at 626.214 kb on + strand, within BACOVA_05148at 626.256 kb on - strand, within BACOVA_05148at 626.256 kb on - strand, within BACOVA_05148at 626.297 kb on + strand, within BACOVA_05148at 626.298 kb on - strand, within BACOVA_05148at 626.357 kb on + strand, within BACOVA_05148at 626.358 kb on - strand, within BACOVA_05148at 626.361 kb on + strand, within BACOVA_05148at 626.364 kb on + strand, within BACOVA_05148at 626.366 kb on + strand, within BACOVA_05148at 626.397 kb on + strand, within BACOVA_05148at 626.404 kb on + strand, within BACOVA_05148at 626.419 kb on - strand, within BACOVA_05148at 626.421 kb on - strand, within BACOVA_05148at 626.457 kb on + strand, within BACOVA_05148at 626.494 kb on - strand, within BACOVA_05148at 626.524 kb on - strand, within BACOVA_05148at 626.534 kb on + strand, within BACOVA_05148at 626.535 kb on - strand, within BACOVA_05148at 626.555 kb on - strand, within BACOVA_05148at 626.565 kb on - strand, within BACOVA_05148at 626.591 kb on + strand, within BACOVA_05148at 626.592 kb on - strand, within BACOVA_05148at 626.605 kb on - strand, within BACOVA_05148at 626.606 kb on + strand, within BACOVA_05148at 626.607 kb on - strand, within BACOVA_05148at 626.610 kb on - strand, within BACOVA_05148at 626.696 kb on + strand, within BACOVA_05148at 626.726 kb on + strand, within BACOVA_05148at 626.760 kb on + strand, within BACOVA_05148at 626.761 kb on - strand, within BACOVA_05148at 626.761 kb on - strand, within BACOVA_05148at 626.764 kb on + strand, within BACOVA_05148at 626.789 kb on + strand, within BACOVA_05148at 626.790 kb on - strand, within BACOVA_05148at 626.790 kb on - strand, within BACOVA_05148at 626.790 kb on - strand, within BACOVA_05148at 626.836 kb on + strand, within BACOVA_05148at 626.858 kb on + strand, within BACOVA_05148at 626.858 kb on + strand, within BACOVA_05148at 626.860 kb on + strand, within BACOVA_05148at 626.891 kb on - strand, within BACOVA_05148at 626.954 kb on + strand, within BACOVA_05148at 626.955 kb on - strand, within BACOVA_05148at 626.958 kb on + strand, within BACOVA_05148at 626.959 kb on - strand, within BACOVA_05148at 626.959 kb on - strand, within BACOVA_05148at 626.961 kb on - strand, within BACOVA_05148at 626.988 kb on + strand, within BACOVA_05148at 626.988 kb on + strand, within BACOVA_05148at 626.989 kb on - strand, within BACOVA_05148at 626.989 kb on - strand, within BACOVA_05148at 626.990 kb on + strand, within BACOVA_05148at 626.990 kb on + strand, within BACOVA_05148at 626.991 kb on - strand, within BACOVA_05148at 627.015 kb on - strand, within BACOVA_05148at 627.124 kb on - strand, within BACOVA_05148at 627.165 kb on + strand, within BACOVA_05148at 627.182 kb on + strand, within BACOVA_05148at 627.182 kb on + strand, within BACOVA_05148at 627.187 kb on + strand, within BACOVA_05148at 627.187 kb on + strand, within BACOVA_05148at 627.287 kb on - strand, within BACOVA_05148at 627.297 kb on + strandat 627.327 kb on + strandat 627.365 kb on + strandat 627.365 kb on + strandat 627.424 kb on - strandat 627.436 kb on + strandat 627.444 kb on + strandat 627.468 kb on - strandat 627.470 kb on - strandat 627.487 kb on + strandat 627.517 kb on + strandat 627.567 kb on - strandat 627.572 kb on + strandat 627.573 kb on - strandat 627.583 kb on + strandat 627.586 kb on + strandat 627.600 kb on - strandat 627.650 kb on + strandat 627.651 kb on - strandat 627.671 kb on + strandat 627.671 kb on + strandat 627.672 kb on - strandat 627.742 kb on + strandat 627.743 kb on - strandat 627.743 kb on - strandat 627.745 kb on + strandat 627.874 kb on + strand, within BACOVA_05149at 627.875 kb on - strand, within BACOVA_05149at 627.953 kb on + strand, within BACOVA_05149at 628.025 kb on + strand, within BACOVA_05149at 628.032 kb on + strand, within BACOVA_05149at 628.032 kb on + strand, within BACOVA_05149at 628.033 kb on - strand, within BACOVA_05149at 628.033 kb on - strand, within BACOVA_05149at 628.033 kb on - strand, within BACOVA_05149at 628.033 kb on - strand, within BACOVA_05149at 628.083 kb on + strand, within BACOVA_05149at 628.083 kb on + strand, within BACOVA_05149at 628.084 kb on - strand, within BACOVA_05149at 628.105 kb on + strand, within BACOVA_05149at 628.166 kb on + strand, within BACOVA_05149at 628.170 kb on - strand, within BACOVA_05149at 628.172 kb on - strand, within BACOVA_05149at 628.177 kb on + strand, within BACOVA_05149at 628.177 kb on + strand, within BACOVA_05149at 628.181 kb on - strand, within BACOVA_05149at 628.181 kb on - strand, within BACOVA_05149at 628.305 kb on - strand, within BACOVA_05149at 628.329 kb on + strand, within BACOVA_05149at 628.334 kb on - strand, within BACOVA_05149at 628.355 kb on - strand, within BACOVA_05149at 628.416 kb on + strand, within BACOVA_05149at 628.416 kb on + strand, within BACOVA_05149at 628.417 kb on - strand, within BACOVA_05149at 628.419 kb on + strand, within BACOVA_05149at 628.432 kb on + strand, within BACOVA_05149at 628.433 kb on - strand, within BACOVA_05149at 628.442 kb on - strand, within BACOVA_05149

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1 x (C) complex media
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624,894 + BACOVA_05147 0.10 +0.4
624,894 + BACOVA_05147 0.10 -0.2
624,919 + BACOVA_05147 0.13 +1.0
624,933 + BACOVA_05147 0.14 -0.6
624,937 - BACOVA_05147 0.14 +0.8
624,988 - BACOVA_05147 0.19 -0.6
625,004 - BACOVA_05147 0.20 -1.5
625,062 + BACOVA_05147 0.26 +0.3
625,065 + BACOVA_05147 0.26 +0.4
625,111 - BACOVA_05147 0.30 -0.2
625,215 + BACOVA_05147 0.40 -0.2
625,239 + BACOVA_05147 0.42 +0.8
625,252 + BACOVA_05147 0.43 +0.3
625,272 + BACOVA_05147 0.45 +0.2
625,328 + BACOVA_05147 0.50 -0.1
625,328 + BACOVA_05147 0.50 -0.9
625,363 + BACOVA_05147 0.53 +1.7
625,405 + BACOVA_05147 0.57 -2.0
625,410 - BACOVA_05147 0.58 +0.6
625,410 - BACOVA_05147 0.58 -1.2
625,413 - BACOVA_05147 0.58 -0.3
625,458 - BACOVA_05147 0.62 -1.8
625,466 + BACOVA_05147 0.63 +0.2
625,467 - BACOVA_05147 0.63 +1.0
625,472 + BACOVA_05147 0.63 +0.4
625,473 - BACOVA_05147 0.63 -0.2
625,483 + BACOVA_05147 0.64 -1.0
625,519 + BACOVA_05147 0.68 -0.3
625,519 + BACOVA_05147 0.68 +0.1
625,519 + BACOVA_05147 0.68 -0.2
625,520 - BACOVA_05147 0.68 +1.0
625,521 + BACOVA_05147 0.68 +1.5
625,522 - BACOVA_05147 0.68 +0.3
625,539 + BACOVA_05147 0.69 -0.5
625,544 + BACOVA_05147 0.70 +1.5
625,545 - BACOVA_05147 0.70 +1.8
625,644 + BACOVA_05147 0.79 -1.2
625,650 + BACOVA_05147 0.80 +0.8
625,651 - BACOVA_05147 0.80 -0.3
625,652 + BACOVA_05147 0.80 +0.3
625,652 + BACOVA_05147 0.80 +0.2
625,658 - BACOVA_05147 0.80 +0.5
625,784 + -0.2
625,785 - -0.8
625,813 + -0.4
625,822 + -1.5
625,822 + +0.1
625,823 - -0.1
625,829 + +0.4
625,829 + -0.4
625,829 + +0.4
625,832 - +0.1
625,888 + +0.0
625,889 - -1.5
625,949 - +0.7
625,977 + +0.5
625,978 - -0.6
625,978 - +0.4
625,978 - +0.8
625,978 - +0.5
625,981 + +0.1
625,984 + -0.4
625,984 + +0.5
626,041 + +0.4
626,065 + BACOVA_05148 0.11 +0.6
626,065 + BACOVA_05148 0.11 -0.4
626,130 + BACOVA_05148 0.15 -0.5
626,130 + BACOVA_05148 0.15 -0.8
626,164 + BACOVA_05148 0.17 +1.5
626,164 + BACOVA_05148 0.17 -0.2
626,180 + BACOVA_05148 0.18 +0.0
626,181 - BACOVA_05148 0.19 +1.4
626,182 + BACOVA_05148 0.19 -0.5
626,214 + BACOVA_05148 0.21 +0.3
626,256 - BACOVA_05148 0.23 -0.2
626,256 - BACOVA_05148 0.23 +0.5
626,297 + BACOVA_05148 0.26 +0.4
626,298 - BACOVA_05148 0.26 +1.1
626,357 + BACOVA_05148 0.30 +0.4
626,358 - BACOVA_05148 0.30 -0.2
626,361 + BACOVA_05148 0.30 -1.7
626,364 + BACOVA_05148 0.30 +0.5
626,366 + BACOVA_05148 0.30 -1.3
626,397 + BACOVA_05148 0.32 -0.2
626,404 + BACOVA_05148 0.33 +0.1
626,419 - BACOVA_05148 0.34 +0.3
626,421 - BACOVA_05148 0.34 +0.8
626,457 + BACOVA_05148 0.36 -0.1
626,494 - BACOVA_05148 0.39 -0.2
626,524 - BACOVA_05148 0.40 +0.8
626,534 + BACOVA_05148 0.41 +0.8
626,535 - BACOVA_05148 0.41 +0.8
626,555 - BACOVA_05148 0.42 -0.0
626,565 - BACOVA_05148 0.43 -0.5
626,591 + BACOVA_05148 0.45 -0.2
626,592 - BACOVA_05148 0.45 +1.3
626,605 - BACOVA_05148 0.46 +0.3
626,606 + BACOVA_05148 0.46 +0.4
626,607 - BACOVA_05148 0.46 +0.2
626,610 - BACOVA_05148 0.46 -0.8
626,696 + BACOVA_05148 0.52 +0.3
626,726 + BACOVA_05148 0.53 -0.4
626,760 + BACOVA_05148 0.56 -1.5
626,761 - BACOVA_05148 0.56 +0.5
626,761 - BACOVA_05148 0.56 +0.4
626,764 + BACOVA_05148 0.56 -0.8
626,789 + BACOVA_05148 0.57 +0.8
626,790 - BACOVA_05148 0.58 +0.6
626,790 - BACOVA_05148 0.58 +0.7
626,790 - BACOVA_05148 0.58 +2.1
626,836 + BACOVA_05148 0.60 +0.4
626,858 + BACOVA_05148 0.62 -0.0
626,858 + BACOVA_05148 0.62 -0.3
626,860 + BACOVA_05148 0.62 +0.8
626,891 - BACOVA_05148 0.64 -0.4
626,954 + BACOVA_05148 0.68 +1.1
626,955 - BACOVA_05148 0.68 +1.0
626,958 + BACOVA_05148 0.68 -0.2
626,959 - BACOVA_05148 0.68 +0.2
626,959 - BACOVA_05148 0.68 +0.1
626,961 - BACOVA_05148 0.68 +0.8
626,988 + BACOVA_05148 0.70 -0.6
626,988 + BACOVA_05148 0.70 -0.6
626,989 - BACOVA_05148 0.70 +0.3
626,989 - BACOVA_05148 0.70 -0.0
626,990 + BACOVA_05148 0.70 +0.0
626,990 + BACOVA_05148 0.70 +0.1
626,991 - BACOVA_05148 0.70 -0.3
627,015 - BACOVA_05148 0.72 +1.1
627,124 - BACOVA_05148 0.79 -2.2
627,165 + BACOVA_05148 0.82 +0.5
627,182 + BACOVA_05148 0.83 -1.2
627,182 + BACOVA_05148 0.83 -0.6
627,187 + BACOVA_05148 0.83 -0.7
627,187 + BACOVA_05148 0.83 -0.2
627,287 - BACOVA_05148 0.89 +1.8
627,297 + -0.0
627,327 + -1.5
627,365 + +0.6
627,365 + +0.2
627,424 - +1.2
627,436 + -0.7
627,444 + +0.4
627,468 - +0.8
627,470 - +0.2
627,487 + -0.3
627,517 + -0.5
627,567 - -1.7
627,572 + -0.3
627,573 - -0.8
627,583 + +0.6
627,586 + -0.2
627,600 - +0.8
627,650 + -0.0
627,651 - -1.4
627,671 + +1.5
627,671 + -1.3
627,672 - -0.9
627,742 + -0.3
627,743 - -0.9
627,743 - +0.2
627,745 + +0.3
627,874 + BACOVA_05149 0.12 -0.4
627,875 - BACOVA_05149 0.12 +0.8
627,953 + BACOVA_05149 0.14 -2.0
628,025 + BACOVA_05149 0.16 +0.1
628,032 + BACOVA_05149 0.16 -0.3
628,032 + BACOVA_05149 0.16 +0.5
628,033 - BACOVA_05149 0.16 -0.8
628,033 - BACOVA_05149 0.16 +2.8
628,033 - BACOVA_05149 0.16 +0.8
628,033 - BACOVA_05149 0.16 +0.3
628,083 + BACOVA_05149 0.18 -0.8
628,083 + BACOVA_05149 0.18 -0.3
628,084 - BACOVA_05149 0.18 +0.3
628,105 + BACOVA_05149 0.18 -0.5
628,166 + BACOVA_05149 0.20 +0.1
628,170 - BACOVA_05149 0.20 -0.9
628,172 - BACOVA_05149 0.20 -0.2
628,177 + BACOVA_05149 0.20 +0.8
628,177 + BACOVA_05149 0.20 -0.8
628,181 - BACOVA_05149 0.20 -0.9
628,181 - BACOVA_05149 0.20 -0.8
628,305 - BACOVA_05149 0.24 -0.5
628,329 + BACOVA_05149 0.25 -0.4
628,334 - BACOVA_05149 0.25 +1.1
628,355 - BACOVA_05149 0.25 -0.5
628,416 + BACOVA_05149 0.27 -0.4
628,416 + BACOVA_05149 0.27 -0.4
628,417 - BACOVA_05149 0.27 +0.0
628,419 + BACOVA_05149 0.27 +0.2
628,432 + BACOVA_05149 0.28 -0.7
628,433 - BACOVA_05149 0.28 +0.8
628,442 - BACOVA_05149 0.28 +0.1

Or see this region's nucleotide sequence