Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05482

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05481 and BACOVA_05482 are separated by 105 nucleotidesBACOVA_05482 and BACOVA_05483 are separated by 4 nucleotidesBACOVA_05483 and BACOVA_05484 are separated by 1 nucleotides BACOVA_05481: BACOVA_05481 - pyridoxal-phosphate dependent TrpB-like enzyme, at 982,831 to 984,201 _05481 BACOVA_05482: BACOVA_05482 - cation transport protein, at 984,307 to 986,163 _05482 BACOVA_05483: BACOVA_05483 - TrkA N-terminal domain protein, at 986,168 to 986,854 _05483 BACOVA_05484: BACOVA_05484 - bacterial capsule synthesis protein, at 986,856 to 987,782 _05484 Position (kb) 984 985 986 987Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 983.380 kb on - strand, within BACOVA_05481at 983.500 kb on - strand, within BACOVA_05481at 983.520 kb on - strand, within BACOVA_05481at 983.530 kb on - strand, within BACOVA_05481at 983.565 kb on + strand, within BACOVA_05481at 983.611 kb on - strand, within BACOVA_05481at 983.634 kb on + strand, within BACOVA_05481at 983.635 kb on - strand, within BACOVA_05481at 983.635 kb on - strand, within BACOVA_05481at 983.635 kb on - strand, within BACOVA_05481at 983.702 kb on + strand, within BACOVA_05481at 983.828 kb on + strand, within BACOVA_05481at 983.831 kb on + strand, within BACOVA_05481at 983.832 kb on - strand, within BACOVA_05481at 983.898 kb on - strand, within BACOVA_05481at 983.901 kb on + strand, within BACOVA_05481at 983.901 kb on + strand, within BACOVA_05481at 983.901 kb on + strand, within BACOVA_05481at 983.902 kb on - strand, within BACOVA_05481at 983.936 kb on + strand, within BACOVA_05481at 983.966 kb on + strand, within BACOVA_05481at 983.966 kb on + strand, within BACOVA_05481at 983.972 kb on + strand, within BACOVA_05481at 984.061 kb on + strand, within BACOVA_05481at 984.111 kb on + strandat 984.111 kb on + strandat 984.144 kb on - strandat 984.178 kb on - strandat 984.178 kb on - strandat 984.178 kb on - strandat 984.178 kb on - strandat 984.180 kb on - strandat 984.180 kb on - strandat 984.201 kb on + strandat 984.201 kb on + strandat 984.202 kb on - strandat 984.303 kb on - strandat 984.344 kb on - strandat 984.361 kb on + strandat 984.369 kb on + strandat 984.385 kb on + strandat 984.390 kb on - strandat 984.390 kb on - strandat 984.390 kb on - strandat 984.390 kb on - strandat 984.390 kb on - strandat 984.390 kb on - strandat 984.411 kb on - strandat 984.441 kb on - strandat 984.441 kb on - strandat 984.458 kb on + strandat 984.460 kb on + strandat 984.461 kb on - strandat 984.483 kb on + strandat 984.484 kb on - strandat 984.503 kb on + strand, within BACOVA_05482at 984.515 kb on - strand, within BACOVA_05482at 984.554 kb on + strand, within BACOVA_05482at 984.558 kb on + strand, within BACOVA_05482at 984.626 kb on + strand, within BACOVA_05482at 984.627 kb on - strand, within BACOVA_05482at 984.627 kb on - strand, within BACOVA_05482at 984.627 kb on - strand, within BACOVA_05482at 984.629 kb on - strand, within BACOVA_05482at 984.639 kb on - strand, within BACOVA_05482at 984.649 kb on - strand, within BACOVA_05482at 984.651 kb on - strand, within BACOVA_05482at 984.678 kb on + strand, within BACOVA_05482at 984.701 kb on + strand, within BACOVA_05482at 984.715 kb on + strand, within BACOVA_05482at 984.734 kb on + strand, within BACOVA_05482at 984.735 kb on - strand, within BACOVA_05482at 984.851 kb on + strand, within BACOVA_05482at 984.885 kb on + strand, within BACOVA_05482at 984.923 kb on + strand, within BACOVA_05482at 984.924 kb on - strand, within BACOVA_05482at 984.924 kb on - strand, within BACOVA_05482at 984.924 kb on - strand, within BACOVA_05482at 984.960 kb on + strand, within BACOVA_05482at 984.981 kb on - strand, within BACOVA_05482at 984.991 kb on - strand, within BACOVA_05482at 985.076 kb on - strand, within BACOVA_05482at 985.105 kb on - strand, within BACOVA_05482at 985.142 kb on + strand, within BACOVA_05482at 985.144 kb on + strand, within BACOVA_05482at 985.145 kb on - strand, within BACOVA_05482at 985.146 kb on + strand, within BACOVA_05482at 985.146 kb on + strand, within BACOVA_05482at 985.146 kb on + strand, within BACOVA_05482at 985.146 kb on + strand, within BACOVA_05482at 985.146 kb on + strand, within BACOVA_05482at 985.146 kb on + strand, within BACOVA_05482at 985.147 kb on - strand, within BACOVA_05482at 985.147 kb on - strand, within BACOVA_05482at 985.151 kb on + strand, within BACOVA_05482at 985.200 kb on + strand, within BACOVA_05482at 985.200 kb on + strand, within BACOVA_05482at 985.201 kb on - strand, within BACOVA_05482at 985.203 kb on + strand, within BACOVA_05482at 985.294 kb on - strand, within BACOVA_05482at 985.332 kb on + strand, within BACOVA_05482at 985.373 kb on + strand, within BACOVA_05482at 985.374 kb on - strand, within BACOVA_05482at 985.421 kb on + strand, within BACOVA_05482at 985.422 kb on - strand, within BACOVA_05482at 985.422 kb on - strand, within BACOVA_05482at 985.426 kb on + strand, within BACOVA_05482at 985.426 kb on + strand, within BACOVA_05482at 985.427 kb on - strand, within BACOVA_05482at 985.520 kb on + strand, within BACOVA_05482at 985.520 kb on + strand, within BACOVA_05482at 985.544 kb on + strand, within BACOVA_05482at 985.556 kb on + strand, within BACOVA_05482at 985.557 kb on - strand, within BACOVA_05482at 985.557 kb on - strand, within BACOVA_05482at 985.557 kb on - strand, within BACOVA_05482at 985.560 kb on + strand, within BACOVA_05482at 985.560 kb on + strand, within BACOVA_05482at 985.597 kb on - strand, within BACOVA_05482at 985.701 kb on - strand, within BACOVA_05482at 985.784 kb on + strand, within BACOVA_05482at 985.800 kb on - strand, within BACOVA_05482at 985.805 kb on + strand, within BACOVA_05482at 985.806 kb on - strand, within BACOVA_05482at 985.806 kb on - strand, within BACOVA_05482at 985.931 kb on + strand, within BACOVA_05482at 985.987 kb on - strandat 986.043 kb on - strandat 986.065 kb on - strandat 986.084 kb on + strandat 986.084 kb on + strandat 986.085 kb on - strandat 986.096 kb on + strandat 986.096 kb on + strandat 986.097 kb on - strandat 986.128 kb on + strandat 986.145 kb on + strandat 986.145 kb on + strandat 986.156 kb on + strandat 986.161 kb on + strandat 986.162 kb on - strandat 986.162 kb on - strandat 986.168 kb on - strandat 986.175 kb on - strandat 986.176 kb on + strandat 986.179 kb on + strandat 986.180 kb on - strandat 986.198 kb on + strandat 986.246 kb on - strand, within BACOVA_05483at 986.246 kb on - strand, within BACOVA_05483at 986.246 kb on - strand, within BACOVA_05483at 986.246 kb on - strand, within BACOVA_05483at 986.260 kb on - strand, within BACOVA_05483at 986.274 kb on + strand, within BACOVA_05483at 986.290 kb on + strand, within BACOVA_05483at 986.300 kb on - strand, within BACOVA_05483at 986.338 kb on - strand, within BACOVA_05483at 986.357 kb on - strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.367 kb on + strand, within BACOVA_05483at 986.368 kb on - strand, within BACOVA_05483at 986.371 kb on + strand, within BACOVA_05483at 986.476 kb on + strand, within BACOVA_05483at 986.548 kb on - strand, within BACOVA_05483at 986.569 kb on + strand, within BACOVA_05483at 986.601 kb on - strand, within BACOVA_05483at 986.603 kb on + strand, within BACOVA_05483at 986.604 kb on - strand, within BACOVA_05483at 986.604 kb on - strand, within BACOVA_05483at 986.604 kb on - strand, within BACOVA_05483at 986.692 kb on - strand, within BACOVA_05483at 986.731 kb on + strand, within BACOVA_05483at 986.732 kb on - strand, within BACOVA_05483at 986.925 kb on - strandat 986.979 kb on + strand, within BACOVA_05484at 986.997 kb on - strand, within BACOVA_05484at 986.999 kb on - strand, within BACOVA_05484at 987.011 kb on + strand, within BACOVA_05484at 987.062 kb on + strand, within BACOVA_05484at 987.063 kb on - strand, within BACOVA_05484at 987.113 kb on + strand, within BACOVA_05484at 987.114 kb on - strand, within BACOVA_05484at 987.117 kb on - strand, within BACOVA_05484

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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983,380 - BACOVA_05481 0.40 -0.4
983,500 - BACOVA_05481 0.49 +0.3
983,520 - BACOVA_05481 0.50 -0.1
983,530 - BACOVA_05481 0.51 +1.5
983,565 + BACOVA_05481 0.54 -0.7
983,611 - BACOVA_05481 0.57 +0.7
983,634 + BACOVA_05481 0.59 -0.7
983,635 - BACOVA_05481 0.59 +0.9
983,635 - BACOVA_05481 0.59 -2.2
983,635 - BACOVA_05481 0.59 +0.9
983,702 + BACOVA_05481 0.64 -0.6
983,828 + BACOVA_05481 0.73 +0.8
983,831 + BACOVA_05481 0.73 +0.0
983,832 - BACOVA_05481 0.73 -0.5
983,898 - BACOVA_05481 0.78 -0.5
983,901 + BACOVA_05481 0.78 +0.4
983,901 + BACOVA_05481 0.78 -0.1
983,901 + BACOVA_05481 0.78 -0.1
983,902 - BACOVA_05481 0.78 +0.9
983,936 + BACOVA_05481 0.81 +0.6
983,966 + BACOVA_05481 0.83 +0.2
983,966 + BACOVA_05481 0.83 +0.0
983,972 + BACOVA_05481 0.83 -0.7
984,061 + BACOVA_05481 0.90 +1.1
984,111 + +0.9
984,111 + -0.1
984,144 - +0.0
984,178 - +1.5
984,178 - +0.5
984,178 - -0.7
984,178 - -0.6
984,180 - -4.6
984,180 - -0.5
984,201 + -0.7
984,201 + -0.4
984,202 - -0.8
984,303 - -0.9
984,344 - +0.2
984,361 + -0.5
984,369 + -2.4
984,385 + -0.1
984,390 - -0.8
984,390 - -1.7
984,390 - +1.1
984,390 - +0.8
984,390 - +0.4
984,390 - -0.3
984,411 - -0.7
984,441 - -0.4
984,441 - -0.4
984,458 + -0.7
984,460 + +0.9
984,461 - -0.6
984,483 + +1.2
984,484 - -0.3
984,503 + BACOVA_05482 0.11 -0.9
984,515 - BACOVA_05482 0.11 +0.6
984,554 + BACOVA_05482 0.13 +0.4
984,558 + BACOVA_05482 0.14 -1.7
984,626 + BACOVA_05482 0.17 -0.7
984,627 - BACOVA_05482 0.17 +0.8
984,627 - BACOVA_05482 0.17 -0.1
984,627 - BACOVA_05482 0.17 +0.1
984,629 - BACOVA_05482 0.17 -0.5
984,639 - BACOVA_05482 0.18 -0.5
984,649 - BACOVA_05482 0.18 -0.5
984,651 - BACOVA_05482 0.19 +0.1
984,678 + BACOVA_05482 0.20 +1.2
984,701 + BACOVA_05482 0.21 -0.1
984,715 + BACOVA_05482 0.22 +0.9
984,734 + BACOVA_05482 0.23 -0.5
984,735 - BACOVA_05482 0.23 -0.4
984,851 + BACOVA_05482 0.29 -0.1
984,885 + BACOVA_05482 0.31 +0.5
984,923 + BACOVA_05482 0.33 -0.7
984,924 - BACOVA_05482 0.33 +4.0
984,924 - BACOVA_05482 0.33 +0.7
984,924 - BACOVA_05482 0.33 +1.1
984,960 + BACOVA_05482 0.35 +0.4
984,981 - BACOVA_05482 0.36 +0.2
984,991 - BACOVA_05482 0.37 +0.7
985,076 - BACOVA_05482 0.41 +0.9
985,105 - BACOVA_05482 0.43 -0.1
985,142 + BACOVA_05482 0.45 +0.9
985,144 + BACOVA_05482 0.45 -0.3
985,145 - BACOVA_05482 0.45 +0.1
985,146 + BACOVA_05482 0.45 +0.1
985,146 + BACOVA_05482 0.45 +0.0
985,146 + BACOVA_05482 0.45 +0.0
985,146 + BACOVA_05482 0.45 -0.3
985,146 + BACOVA_05482 0.45 -0.3
985,146 + BACOVA_05482 0.45 +1.0
985,147 - BACOVA_05482 0.45 +0.5
985,147 - BACOVA_05482 0.45 -0.1
985,151 + BACOVA_05482 0.45 -0.8
985,200 + BACOVA_05482 0.48 -0.1
985,200 + BACOVA_05482 0.48 -0.7
985,201 - BACOVA_05482 0.48 +0.3
985,203 + BACOVA_05482 0.48 -0.1
985,294 - BACOVA_05482 0.53 +1.8
985,332 + BACOVA_05482 0.55 +2.1
985,373 + BACOVA_05482 0.57 +1.0
985,374 - BACOVA_05482 0.57 +0.3
985,421 + BACOVA_05482 0.60 -1.0
985,422 - BACOVA_05482 0.60 -1.4
985,422 - BACOVA_05482 0.60 -0.5
985,426 + BACOVA_05482 0.60 -0.2
985,426 + BACOVA_05482 0.60 -0.2
985,427 - BACOVA_05482 0.60 -0.3
985,520 + BACOVA_05482 0.65 +0.2
985,520 + BACOVA_05482 0.65 +1.1
985,544 + BACOVA_05482 0.67 -1.9
985,556 + BACOVA_05482 0.67 -0.5
985,557 - BACOVA_05482 0.67 +1.1
985,557 - BACOVA_05482 0.67 -0.1
985,557 - BACOVA_05482 0.67 -0.4
985,560 + BACOVA_05482 0.67 +1.4
985,560 + BACOVA_05482 0.67 +0.4
985,597 - BACOVA_05482 0.69 -0.2
985,701 - BACOVA_05482 0.75 +1.9
985,784 + BACOVA_05482 0.80 +0.6
985,800 - BACOVA_05482 0.80 -0.4
985,805 + BACOVA_05482 0.81 -0.4
985,806 - BACOVA_05482 0.81 -0.4
985,806 - BACOVA_05482 0.81 +0.9
985,931 + BACOVA_05482 0.87 -0.1
985,987 - -0.8
986,043 - -0.7
986,065 - -0.0
986,084 + -1.4
986,084 + -0.3
986,085 - +1.9
986,096 + -0.7
986,096 + -1.4
986,097 - -1.9
986,128 + -0.2
986,145 + +1.2
986,145 + +0.7
986,156 + -0.1
986,161 + +0.1
986,162 - +1.2
986,162 - -1.1
986,168 - -0.6
986,175 - +0.2
986,176 + -1.1
986,179 + +0.2
986,180 - -1.2
986,198 + +0.5
986,246 - BACOVA_05483 0.11 -2.3
986,246 - BACOVA_05483 0.11 +0.6
986,246 - BACOVA_05483 0.11 -0.2
986,246 - BACOVA_05483 0.11 -0.8
986,260 - BACOVA_05483 0.13 -1.5
986,274 + BACOVA_05483 0.15 -0.9
986,290 + BACOVA_05483 0.18 +0.1
986,300 - BACOVA_05483 0.19 +1.7
986,338 - BACOVA_05483 0.25 -0.7
986,357 - BACOVA_05483 0.28 +0.1
986,367 + BACOVA_05483 0.29 -0.0
986,367 + BACOVA_05483 0.29 -0.5
986,367 + BACOVA_05483 0.29 +0.5
986,367 + BACOVA_05483 0.29 -1.7
986,368 - BACOVA_05483 0.29 +0.3
986,371 + BACOVA_05483 0.30 -2.3
986,476 + BACOVA_05483 0.45 +0.4
986,548 - BACOVA_05483 0.55 -0.4
986,569 + BACOVA_05483 0.58 +2.8
986,601 - BACOVA_05483 0.63 +0.3
986,603 + BACOVA_05483 0.63 +0.5
986,604 - BACOVA_05483 0.63 -1.0
986,604 - BACOVA_05483 0.63 +0.4
986,604 - BACOVA_05483 0.63 +1.3
986,692 - BACOVA_05483 0.76 -0.1
986,731 + BACOVA_05483 0.82 -0.9
986,732 - BACOVA_05483 0.82 +0.3
986,925 - -1.0
986,979 + BACOVA_05484 0.13 -0.1
986,997 - BACOVA_05484 0.15 -1.9
986,999 - BACOVA_05484 0.15 -0.4
987,011 + BACOVA_05484 0.17 -0.5
987,062 + BACOVA_05484 0.22 +0.5
987,063 - BACOVA_05484 0.22 -0.7
987,113 + BACOVA_05484 0.28 -0.7
987,114 - BACOVA_05484 0.28 +0.7
987,117 - BACOVA_05484 0.28 -0.5

Or see this region's nucleotide sequence