Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05350

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05349 and BACOVA_05350 are separated by 21 nucleotidesBACOVA_05350 and BACOVA_05351 are separated by 44 nucleotidesBACOVA_05351 and BACOVA_05354 are separated by 82 nucleotidesBACOVA_05354 and BACOVA_05352 overlap by 202 nucleotidesBACOVA_05352 and BACOVA_05353 are separated by 59 nucleotidesBACOVA_05353 and BACOVA_05355 overlap by 50 nucleotidesBACOVA_05355 and BACOVA_05356 are separated by 155 nucleotides BACOVA_05349: BACOVA_05349 - efflux transporter, RND family, MFP subunit, at 838,652 to 839,731 _05349 BACOVA_05350: BACOVA_05350 - outer membrane efflux protein, at 839,753 to 841,237 _05350 BACOVA_05351: BACOVA_05351 - hypothetical protein, at 841,282 to 841,401 _05351 BACOVA_05354: BACOVA_05354 - hypothetical protein, at 841,484 to 841,726 _05354 BACOVA_05352: BACOVA_05352 - hypothetical protein, at 841,525 to 841,665 _05352 BACOVA_05353: BACOVA_05353 - hypothetical protein, at 841,725 to 841,874 _05353 BACOVA_05355: BACOVA_05355 - hypothetical protein, at 841,825 to 841,956 _05355 BACOVA_05356: BACOVA_05356 - hypothetical protein, at 842,112 to 843,113 _05356 Position (kb) 839 840 841 842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 838.771 kb on + strand, within BACOVA_05349at 838.774 kb on + strand, within BACOVA_05349at 838.774 kb on + strand, within BACOVA_05349at 838.781 kb on - strand, within BACOVA_05349at 838.781 kb on - strand, within BACOVA_05349at 838.819 kb on + strand, within BACOVA_05349at 838.822 kb on - strand, within BACOVA_05349at 838.932 kb on - strand, within BACOVA_05349at 838.932 kb on - strand, within BACOVA_05349at 838.940 kb on - strand, within BACOVA_05349at 838.943 kb on - strand, within BACOVA_05349at 838.945 kb on - strand, within BACOVA_05349at 838.948 kb on + strand, within BACOVA_05349at 838.949 kb on - strand, within BACOVA_05349at 838.952 kb on + strand, within BACOVA_05349at 838.953 kb on - strand, within BACOVA_05349at 839.096 kb on + strand, within BACOVA_05349at 839.099 kb on + strand, within BACOVA_05349at 839.099 kb on + strand, within BACOVA_05349at 839.144 kb on + strand, within BACOVA_05349at 839.166 kb on + strand, within BACOVA_05349at 839.167 kb on - strand, within BACOVA_05349at 839.168 kb on + strand, within BACOVA_05349at 839.169 kb on - strand, within BACOVA_05349at 839.169 kb on - strand, within BACOVA_05349at 839.217 kb on + strand, within BACOVA_05349at 839.224 kb on + strand, within BACOVA_05349at 839.225 kb on - strand, within BACOVA_05349at 839.250 kb on - strand, within BACOVA_05349at 839.290 kb on + strand, within BACOVA_05349at 839.353 kb on + strand, within BACOVA_05349at 839.353 kb on + strand, within BACOVA_05349at 839.461 kb on + strand, within BACOVA_05349at 839.462 kb on - strand, within BACOVA_05349at 839.475 kb on - strand, within BACOVA_05349at 839.475 kb on - strand, within BACOVA_05349at 839.476 kb on + strand, within BACOVA_05349at 839.491 kb on + strand, within BACOVA_05349at 839.514 kb on - strand, within BACOVA_05349at 839.548 kb on + strand, within BACOVA_05349at 839.548 kb on + strand, within BACOVA_05349at 839.553 kb on - strand, within BACOVA_05349at 839.585 kb on + strand, within BACOVA_05349at 839.586 kb on - strand, within BACOVA_05349at 839.602 kb on + strand, within BACOVA_05349at 839.603 kb on - strand, within BACOVA_05349at 839.713 kb on - strandat 839.731 kb on + strandat 839.755 kb on - strandat 839.788 kb on + strandat 839.812 kb on - strandat 839.814 kb on - strandat 839.868 kb on - strandat 839.869 kb on + strandat 839.869 kb on + strandat 839.870 kb on - strandat 839.870 kb on - strandat 839.870 kb on - strandat 839.870 kb on - strandat 839.872 kb on - strandat 839.959 kb on + strand, within BACOVA_05350at 839.960 kb on - strand, within BACOVA_05350at 839.960 kb on - strand, within BACOVA_05350at 839.964 kb on + strand, within BACOVA_05350at 839.999 kb on + strand, within BACOVA_05350at 840.040 kb on + strand, within BACOVA_05350at 840.041 kb on - strand, within BACOVA_05350at 840.050 kb on - strand, within BACOVA_05350at 840.197 kb on + strand, within BACOVA_05350at 840.205 kb on - strand, within BACOVA_05350at 840.205 kb on - strand, within BACOVA_05350at 840.293 kb on + strand, within BACOVA_05350at 840.354 kb on - strand, within BACOVA_05350at 840.362 kb on - strand, within BACOVA_05350at 840.368 kb on + strand, within BACOVA_05350at 840.369 kb on - strand, within BACOVA_05350at 840.402 kb on - strand, within BACOVA_05350at 840.416 kb on + strand, within BACOVA_05350at 840.416 kb on + strand, within BACOVA_05350at 840.497 kb on - strand, within BACOVA_05350at 840.507 kb on - strand, within BACOVA_05350at 840.539 kb on + strand, within BACOVA_05350at 840.543 kb on - strand, within BACOVA_05350at 840.590 kb on - strand, within BACOVA_05350at 840.594 kb on + strand, within BACOVA_05350at 840.595 kb on - strand, within BACOVA_05350at 840.676 kb on + strand, within BACOVA_05350at 840.677 kb on - strand, within BACOVA_05350at 840.689 kb on + strand, within BACOVA_05350at 840.691 kb on + strand, within BACOVA_05350at 840.691 kb on + strand, within BACOVA_05350at 840.711 kb on + strand, within BACOVA_05350at 840.714 kb on - strand, within BACOVA_05350at 840.732 kb on + strand, within BACOVA_05350at 840.765 kb on - strand, within BACOVA_05350at 840.772 kb on + strand, within BACOVA_05350at 840.773 kb on - strand, within BACOVA_05350at 840.783 kb on - strand, within BACOVA_05350at 840.795 kb on + strand, within BACOVA_05350at 840.805 kb on + strand, within BACOVA_05350at 840.805 kb on + strand, within BACOVA_05350at 840.805 kb on + strand, within BACOVA_05350at 840.806 kb on - strand, within BACOVA_05350at 840.822 kb on + strand, within BACOVA_05350at 840.823 kb on - strand, within BACOVA_05350at 840.871 kb on + strand, within BACOVA_05350at 840.871 kb on + strand, within BACOVA_05350at 840.871 kb on + strand, within BACOVA_05350at 840.871 kb on + strand, within BACOVA_05350at 840.871 kb on + strand, within BACOVA_05350at 840.871 kb on + strand, within BACOVA_05350at 840.884 kb on - strand, within BACOVA_05350at 840.902 kb on - strand, within BACOVA_05350at 840.911 kb on + strand, within BACOVA_05350at 840.920 kb on - strand, within BACOVA_05350at 840.920 kb on - strand, within BACOVA_05350at 840.929 kb on - strand, within BACOVA_05350at 840.931 kb on + strand, within BACOVA_05350at 840.932 kb on - strand, within BACOVA_05350at 840.954 kb on + strand, within BACOVA_05350at 840.993 kb on - strand, within BACOVA_05350at 840.993 kb on - strand, within BACOVA_05350at 841.006 kb on - strand, within BACOVA_05350at 841.006 kb on - strand, within BACOVA_05350at 841.031 kb on - strand, within BACOVA_05350at 841.056 kb on + strand, within BACOVA_05350at 841.074 kb on + strand, within BACOVA_05350at 841.074 kb on + strand, within BACOVA_05350at 841.154 kb on + strandat 841.156 kb on + strandat 841.157 kb on - strandat 841.193 kb on - strandat 841.199 kb on + strandat 841.199 kb on + strandat 841.208 kb on + strandat 841.220 kb on + strandat 841.220 kb on + strandat 841.220 kb on + strandat 841.221 kb on - strandat 841.223 kb on + strandat 841.224 kb on - strandat 841.224 kb on - strandat 841.270 kb on - strandat 841.333 kb on - strand, within BACOVA_05351at 841.356 kb on - strand, within BACOVA_05351at 841.356 kb on - strand, within BACOVA_05351at 841.363 kb on + strand, within BACOVA_05351at 841.369 kb on - strand, within BACOVA_05351at 841.418 kb on + strandat 841.420 kb on + strandat 841.421 kb on - strandat 841.507 kb on + strandat 841.610 kb on + strandat 841.615 kb on + strandat 841.615 kb on + strandat 841.615 kb on + strandat 841.616 kb on - strandat 841.687 kb on - strandat 841.695 kb on + strandat 841.704 kb on - strandat 841.742 kb on + strand, within BACOVA_05353at 841.748 kb on - strand, within BACOVA_05353at 841.748 kb on - strand, within BACOVA_05353at 841.763 kb on + strand, within BACOVA_05353at 841.777 kb on + strand, within BACOVA_05353at 841.778 kb on - strand, within BACOVA_05353at 841.854 kb on - strandat 841.889 kb on - strand, within BACOVA_05355at 841.987 kb on - strandat 842.042 kb on + strandat 842.081 kb on + strandat 842.087 kb on + strandat 842.088 kb on - strandat 842.130 kb on - strandat 842.162 kb on + strandat 842.162 kb on + strandat 842.163 kb on - strandat 842.177 kb on + strandat 842.178 kb on - strandat 842.180 kb on - strandat 842.183 kb on - strandat 842.224 kb on - strand, within BACOVA_05356at 842.230 kb on + strand, within BACOVA_05356at 842.231 kb on - strand, within BACOVA_05356

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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838,771 + BACOVA_05349 0.11 -1.6
838,774 + BACOVA_05349 0.11 -0.2
838,774 + BACOVA_05349 0.11 -0.9
838,781 - BACOVA_05349 0.12 -0.3
838,781 - BACOVA_05349 0.12 +2.5
838,819 + BACOVA_05349 0.15 -1.3
838,822 - BACOVA_05349 0.16 -0.6
838,932 - BACOVA_05349 0.26 -0.3
838,932 - BACOVA_05349 0.26 -1.4
838,940 - BACOVA_05349 0.27 -1.6
838,943 - BACOVA_05349 0.27 +0.8
838,945 - BACOVA_05349 0.27 +0.3
838,948 + BACOVA_05349 0.27 +0.6
838,949 - BACOVA_05349 0.28 -1.1
838,952 + BACOVA_05349 0.28 -0.6
838,953 - BACOVA_05349 0.28 -1.9
839,096 + BACOVA_05349 0.41 -1.6
839,099 + BACOVA_05349 0.41 +0.6
839,099 + BACOVA_05349 0.41 +0.2
839,144 + BACOVA_05349 0.46 -2.4
839,166 + BACOVA_05349 0.48 -0.1
839,167 - BACOVA_05349 0.48 -1.1
839,168 + BACOVA_05349 0.48 -0.6
839,169 - BACOVA_05349 0.48 -0.4
839,169 - BACOVA_05349 0.48 +0.9
839,217 + BACOVA_05349 0.52 +0.1
839,224 + BACOVA_05349 0.53 -0.6
839,225 - BACOVA_05349 0.53 -1.4
839,250 - BACOVA_05349 0.55 +0.9
839,290 + BACOVA_05349 0.59 -1.1
839,353 + BACOVA_05349 0.65 +1.1
839,353 + BACOVA_05349 0.65 +0.4
839,461 + BACOVA_05349 0.75 -0.3
839,462 - BACOVA_05349 0.75 -0.8
839,475 - BACOVA_05349 0.76 +0.6
839,475 - BACOVA_05349 0.76 -1.2
839,476 + BACOVA_05349 0.76 +0.7
839,491 + BACOVA_05349 0.78 +0.9
839,514 - BACOVA_05349 0.80 -1.4
839,548 + BACOVA_05349 0.83 +1.4
839,548 + BACOVA_05349 0.83 +0.5
839,553 - BACOVA_05349 0.83 +0.1
839,585 + BACOVA_05349 0.86 -1.4
839,586 - BACOVA_05349 0.86 -2.5
839,602 + BACOVA_05349 0.88 +0.1
839,603 - BACOVA_05349 0.88 -1.2
839,713 - -2.1
839,731 + -0.1
839,755 - +0.1
839,788 + -1.2
839,812 - -0.1
839,814 - +0.4
839,868 - -0.6
839,869 + +1.5
839,869 + +0.4
839,870 - -0.7
839,870 - +2.9
839,870 - -1.4
839,870 - -2.2
839,872 - -2.2
839,959 + BACOVA_05350 0.14 -0.2
839,960 - BACOVA_05350 0.14 -1.2
839,960 - BACOVA_05350 0.14 -0.6
839,964 + BACOVA_05350 0.14 -0.4
839,999 + BACOVA_05350 0.17 -0.6
840,040 + BACOVA_05350 0.19 +0.9
840,041 - BACOVA_05350 0.19 +1.5
840,050 - BACOVA_05350 0.20 -0.6
840,197 + BACOVA_05350 0.30 -2.5
840,205 - BACOVA_05350 0.30 -0.8
840,205 - BACOVA_05350 0.30 -0.4
840,293 + BACOVA_05350 0.36 -0.2
840,354 - BACOVA_05350 0.40 -0.6
840,362 - BACOVA_05350 0.41 +0.4
840,368 + BACOVA_05350 0.41 -0.7
840,369 - BACOVA_05350 0.41 +0.1
840,402 - BACOVA_05350 0.44 +1.5
840,416 + BACOVA_05350 0.45 -0.4
840,416 + BACOVA_05350 0.45 -0.6
840,497 - BACOVA_05350 0.50 +0.4
840,507 - BACOVA_05350 0.51 -0.9
840,539 + BACOVA_05350 0.53 -0.4
840,543 - BACOVA_05350 0.53 -0.3
840,590 - BACOVA_05350 0.56 -0.9
840,594 + BACOVA_05350 0.57 -0.0
840,595 - BACOVA_05350 0.57 +0.0
840,676 + BACOVA_05350 0.62 -0.2
840,677 - BACOVA_05350 0.62 -1.1
840,689 + BACOVA_05350 0.63 +0.1
840,691 + BACOVA_05350 0.63 -0.2
840,691 + BACOVA_05350 0.63 -0.4
840,711 + BACOVA_05350 0.65 +2.9
840,714 - BACOVA_05350 0.65 -0.3
840,732 + BACOVA_05350 0.66 -0.0
840,765 - BACOVA_05350 0.68 -0.1
840,772 + BACOVA_05350 0.69 +0.1
840,773 - BACOVA_05350 0.69 -0.1
840,783 - BACOVA_05350 0.69 -1.4
840,795 + BACOVA_05350 0.70 -0.6
840,805 + BACOVA_05350 0.71 +0.6
840,805 + BACOVA_05350 0.71 +1.5
840,805 + BACOVA_05350 0.71 +0.9
840,806 - BACOVA_05350 0.71 +0.5
840,822 + BACOVA_05350 0.72 +0.6
840,823 - BACOVA_05350 0.72 +0.9
840,871 + BACOVA_05350 0.75 -0.4
840,871 + BACOVA_05350 0.75 -0.5
840,871 + BACOVA_05350 0.75 +0.1
840,871 + BACOVA_05350 0.75 +0.0
840,871 + BACOVA_05350 0.75 -0.1
840,871 + BACOVA_05350 0.75 -0.5
840,884 - BACOVA_05350 0.76 -0.2
840,902 - BACOVA_05350 0.77 +0.2
840,911 + BACOVA_05350 0.78 -0.9
840,920 - BACOVA_05350 0.79 +0.9
840,920 - BACOVA_05350 0.79 +0.2
840,929 - BACOVA_05350 0.79 -0.8
840,931 + BACOVA_05350 0.79 +0.8
840,932 - BACOVA_05350 0.79 -1.4
840,954 + BACOVA_05350 0.81 -0.5
840,993 - BACOVA_05350 0.84 -0.5
840,993 - BACOVA_05350 0.84 -1.7
841,006 - BACOVA_05350 0.84 +0.9
841,006 - BACOVA_05350 0.84 -0.1
841,031 - BACOVA_05350 0.86 -0.9
841,056 + BACOVA_05350 0.88 -2.2
841,074 + BACOVA_05350 0.89 -0.3
841,074 + BACOVA_05350 0.89 +0.3
841,154 + -1.2
841,156 + +0.3
841,157 - -0.3
841,193 - +0.1
841,199 + +0.3
841,199 + +1.1
841,208 + -0.5
841,220 + +0.3
841,220 + +1.9
841,220 + +0.2
841,221 - -0.6
841,223 + -0.1
841,224 - +0.9
841,224 - +0.4
841,270 - -0.1
841,333 - BACOVA_05351 0.42 -0.9
841,356 - BACOVA_05351 0.62 -1.3
841,356 - BACOVA_05351 0.62 -0.9
841,363 + BACOVA_05351 0.68 -0.2
841,369 - BACOVA_05351 0.72 -1.1
841,418 + -0.3
841,420 + +0.6
841,421 - -0.3
841,507 + -0.9
841,610 + -0.1
841,615 + -0.1
841,615 + -0.4
841,615 + +0.3
841,616 - +0.5
841,687 - +0.4
841,695 + +0.2
841,704 - +1.3
841,742 + BACOVA_05353 0.11 -0.1
841,748 - BACOVA_05353 0.15 +0.1
841,748 - BACOVA_05353 0.15 -1.0
841,763 + BACOVA_05353 0.25 +0.1
841,777 + BACOVA_05353 0.35 -2.0
841,778 - BACOVA_05353 0.35 -0.6
841,854 - +0.3
841,889 - BACOVA_05355 0.48 -0.7
841,987 - +1.9
842,042 + +0.6
842,081 + -0.8
842,087 + +0.3
842,088 - -0.5
842,130 - +0.6
842,162 + -1.5
842,162 + -0.1
842,163 - +0.8
842,177 + +0.9
842,178 - -4.5
842,180 - -0.8
842,183 - +0.6
842,224 - BACOVA_05356 0.11 +0.9
842,230 + BACOVA_05356 0.12 +0.9
842,231 - BACOVA_05356 0.12 -0.3

Or see this region's nucleotide sequence