Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04000

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03999 and BACOVA_04001 are separated by 74 nucleotidesBACOVA_04001 and BACOVA_04000 overlap by 249 nucleotidesBACOVA_04000 and BACOVA_04002 are separated by 253 nucleotides BACOVA_03999: BACOVA_03999 - hypothetical protein, at 333,918 to 335,030 _03999 BACOVA_04001: BACOVA_04001 - hypothetical protein, at 335,105 to 335,443 _04001 BACOVA_04000: BACOVA_04000 - hypothetical protein, at 335,195 to 335,332 _04000 BACOVA_04002: BACOVA_04002 - hypothetical protein, at 335,586 to 336,563 _04002 Position (kb) 335 336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.212 kb on + strand, within BACOVA_03999at 334.212 kb on + strand, within BACOVA_03999at 334.233 kb on - strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.234 kb on + strand, within BACOVA_03999at 334.235 kb on - strand, within BACOVA_03999at 334.238 kb on - strand, within BACOVA_03999at 334.250 kb on - strand, within BACOVA_03999at 334.258 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.290 kb on - strand, within BACOVA_03999at 334.291 kb on + strand, within BACOVA_03999at 334.291 kb on + strand, within BACOVA_03999at 334.292 kb on - strand, within BACOVA_03999at 334.292 kb on - strand, within BACOVA_03999at 334.296 kb on - strand, within BACOVA_03999at 334.321 kb on + strand, within BACOVA_03999at 334.346 kb on + strand, within BACOVA_03999at 334.355 kb on + strand, within BACOVA_03999at 334.355 kb on + strand, within BACOVA_03999at 334.366 kb on + strand, within BACOVA_03999at 334.391 kb on - strand, within BACOVA_03999at 334.458 kb on + strand, within BACOVA_03999at 334.459 kb on - strand, within BACOVA_03999at 334.459 kb on - strand, within BACOVA_03999at 334.526 kb on - strand, within BACOVA_03999at 334.542 kb on + strand, within BACOVA_03999at 334.559 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.565 kb on + strand, within BACOVA_03999at 334.566 kb on - strand, within BACOVA_03999at 334.567 kb on + strand, within BACOVA_03999at 334.573 kb on + strand, within BACOVA_03999at 334.592 kb on + strand, within BACOVA_03999at 334.688 kb on - strand, within BACOVA_03999at 334.803 kb on - strand, within BACOVA_03999at 334.855 kb on - strand, within BACOVA_03999at 334.859 kb on + strand, within BACOVA_03999at 334.864 kb on + strand, within BACOVA_03999at 334.929 kb on - strandat 334.944 kb on - strandat 334.953 kb on + strandat 335.053 kb on - strandat 335.078 kb on + strandat 335.151 kb on - strand, within BACOVA_04001at 335.183 kb on - strand, within BACOVA_04001at 335.184 kb on + strand, within BACOVA_04001at 335.184 kb on + strand, within BACOVA_04001at 335.185 kb on - strand, within BACOVA_04001at 335.185 kb on - strand, within BACOVA_04001at 335.185 kb on - strand, within BACOVA_04001at 335.209 kb on - strandat 335.209 kb on - strandat 335.235 kb on - strandat 335.257 kb on - strandat 335.275 kb on - strandat 335.283 kb on + strandat 335.303 kb on + strandat 335.324 kb on + strandat 335.324 kb on + strandat 335.398 kb on + strandat 335.409 kb on - strandat 335.460 kb on - strandat 335.465 kb on + strandat 335.576 kb on + strandat 335.583 kb on + strandat 335.646 kb on - strandat 335.646 kb on - strandat 335.734 kb on - strand, within BACOVA_04002at 335.984 kb on + strand, within BACOVA_04002at 336.047 kb on + strand, within BACOVA_04002at 336.075 kb on - strand, within BACOVA_04002at 336.077 kb on + strand, within BACOVA_04002at 336.077 kb on + strand, within BACOVA_04002at 336.083 kb on + strand, within BACOVA_04002at 336.086 kb on + strand, within BACOVA_04002at 336.088 kb on + strand, within BACOVA_04002at 336.088 kb on + strand, within BACOVA_04002at 336.201 kb on + strand, within BACOVA_04002at 336.202 kb on - strand, within BACOVA_04002at 336.203 kb on + strand, within BACOVA_04002at 336.203 kb on + strand, within BACOVA_04002

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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334,212 + BACOVA_03999 0.26 -1.5
334,212 + BACOVA_03999 0.26 -1.0
334,233 - BACOVA_03999 0.28 -0.7
334,234 + BACOVA_03999 0.28 -0.8
334,234 + BACOVA_03999 0.28 -1.0
334,234 + BACOVA_03999 0.28 -0.9
334,234 + BACOVA_03999 0.28 -0.0
334,234 + BACOVA_03999 0.28 -1.0
334,234 + BACOVA_03999 0.28 -0.4
334,235 - BACOVA_03999 0.28 -1.0
334,238 - BACOVA_03999 0.29 -1.3
334,250 - BACOVA_03999 0.30 -0.7
334,258 - BACOVA_03999 0.31 -0.7
334,290 - BACOVA_03999 0.33 +0.4
334,290 - BACOVA_03999 0.33 -2.0
334,290 - BACOVA_03999 0.33 -0.7
334,290 - BACOVA_03999 0.33 -0.4
334,291 + BACOVA_03999 0.34 -1.7
334,291 + BACOVA_03999 0.34 -0.4
334,292 - BACOVA_03999 0.34 -0.7
334,292 - BACOVA_03999 0.34 -0.9
334,296 - BACOVA_03999 0.34 -0.2
334,321 + BACOVA_03999 0.36 -2.3
334,346 + BACOVA_03999 0.38 -0.5
334,355 + BACOVA_03999 0.39 -0.2
334,355 + BACOVA_03999 0.39 +1.7
334,366 + BACOVA_03999 0.40 +0.1
334,391 - BACOVA_03999 0.42 -0.6
334,458 + BACOVA_03999 0.49 -2.0
334,459 - BACOVA_03999 0.49 +2.1
334,459 - BACOVA_03999 0.49 -1.2
334,526 - BACOVA_03999 0.55 +0.4
334,542 + BACOVA_03999 0.56 -0.3
334,559 + BACOVA_03999 0.58 +0.6
334,565 + BACOVA_03999 0.58 -0.5
334,565 + BACOVA_03999 0.58 -0.6
334,565 + BACOVA_03999 0.58 -3.2
334,565 + BACOVA_03999 0.58 -1.9
334,566 - BACOVA_03999 0.58 -0.0
334,567 + BACOVA_03999 0.58 -1.1
334,573 + BACOVA_03999 0.59 -0.7
334,592 + BACOVA_03999 0.61 -0.4
334,688 - BACOVA_03999 0.69 +0.2
334,803 - BACOVA_03999 0.80 -0.8
334,855 - BACOVA_03999 0.84 -0.5
334,859 + BACOVA_03999 0.85 -2.3
334,864 + BACOVA_03999 0.85 -1.8
334,929 - -0.4
334,944 - +0.1
334,953 + -0.6
335,053 - -0.6
335,078 + +0.1
335,151 - BACOVA_04001 0.14 -1.7
335,183 - BACOVA_04001 0.23 -0.5
335,184 + BACOVA_04001 0.23 -1.5
335,184 + BACOVA_04001 0.23 -1.1
335,185 - BACOVA_04001 0.24 -0.7
335,185 - BACOVA_04001 0.24 -2.0
335,185 - BACOVA_04001 0.24 -0.2
335,209 - -0.7
335,209 - +1.1
335,235 - -2.2
335,257 - -0.7
335,275 - +0.3
335,283 + -0.6
335,303 + -0.1
335,324 + -0.1
335,324 + +0.4
335,398 + +2.4
335,409 - +0.8
335,460 - +1.2
335,465 + -0.5
335,576 + -1.0
335,583 + -0.7
335,646 - -0.7
335,646 - +0.8
335,734 - BACOVA_04002 0.15 -0.2
335,984 + BACOVA_04002 0.41 -0.0
336,047 + BACOVA_04002 0.47 -1.7
336,075 - BACOVA_04002 0.50 +0.2
336,077 + BACOVA_04002 0.50 -1.7
336,077 + BACOVA_04002 0.50 -2.9
336,083 + BACOVA_04002 0.51 -0.1
336,086 + BACOVA_04002 0.51 +1.1
336,088 + BACOVA_04002 0.51 +0.3
336,088 + BACOVA_04002 0.51 +0.4
336,201 + BACOVA_04002 0.63 -0.5
336,202 - BACOVA_04002 0.63 -1.2
336,203 + BACOVA_04002 0.63 -2.9
336,203 + BACOVA_04002 0.63 +0.4

Or see this region's nucleotide sequence