Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03667 and BACOVA_03668 are separated by 665 nucleotides BACOVA_03668 and BACOVA_03669 are separated by 183 nucleotides BACOVA_03669 and BACOVA_03670 are separated by 208 nucleotides
BACOVA_03667: BACOVA_03667 - ferritin-like protein, at 505,178 to 505,690
_03667
BACOVA_03668: BACOVA_03668 - hypothetical protein, at 506,356 to 506,538
_03668
BACOVA_03669: BACOVA_03669 - hypothetical protein, at 506,722 to 506,850
_03669
BACOVA_03670: BACOVA_03670 - small subunit ribosomal RNA, at 507,059 to 507,553
_03670
Position (kb) 506
507 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 505.363 kb on + strand, within BACOVA_03667 at 505.364 kb on - strand, within BACOVA_03667 at 505.407 kb on + strand, within BACOVA_03667 at 505.408 kb on - strand, within BACOVA_03667 at 505.501 kb on + strand, within BACOVA_03667 at 505.539 kb on - strand, within BACOVA_03667 at 505.590 kb on + strand, within BACOVA_03667 at 505.590 kb on + strand, within BACOVA_03667 at 505.590 kb on + strand, within BACOVA_03667 at 505.594 kb on - strand, within BACOVA_03667 at 505.646 kb on + strand at 505.653 kb on - strand at 505.657 kb on + strand at 505.696 kb on + strand at 505.703 kb on + strand at 505.709 kb on - strand at 505.712 kb on - strand at 505.725 kb on + strand at 505.725 kb on + strand at 505.725 kb on + strand at 505.833 kb on + strand at 505.917 kb on + strand at 506.010 kb on - strand at 506.032 kb on + strand at 506.038 kb on - strand at 506.048 kb on - strand at 506.049 kb on + strand at 506.055 kb on - strand at 506.073 kb on + strand at 506.073 kb on + strand at 506.074 kb on - strand at 506.076 kb on + strand at 506.077 kb on - strand at 506.123 kb on - strand at 506.161 kb on + strand at 506.166 kb on + strand at 506.183 kb on + strand at 506.189 kb on - strand at 506.222 kb on + strand at 506.257 kb on - strand at 506.257 kb on - strand at 506.257 kb on - strand at 506.269 kb on - strand at 506.274 kb on - strand at 506.291 kb on + strand at 506.291 kb on + strand at 506.292 kb on - strand at 506.316 kb on - strand at 506.330 kb on - strand at 506.342 kb on + strand at 506.367 kb on + strand at 506.371 kb on + strand at 506.371 kb on + strand at 506.436 kb on + strand, within BACOVA_03668 at 506.436 kb on + strand, within BACOVA_03668 at 506.437 kb on - strand, within BACOVA_03668 at 506.496 kb on - strand, within BACOVA_03668 at 506.499 kb on + strand, within BACOVA_03668 at 506.503 kb on - strand, within BACOVA_03668 at 506.504 kb on + strand, within BACOVA_03668 at 506.505 kb on - strand, within BACOVA_03668 at 506.505 kb on - strand, within BACOVA_03668 at 506.505 kb on - strand, within BACOVA_03668 at 506.505 kb on - strand, within BACOVA_03668 at 506.508 kb on - strand, within BACOVA_03668 at 506.537 kb on - strand at 506.542 kb on + strand at 506.579 kb on + strand at 506.589 kb on + strand at 506.590 kb on - strand at 506.654 kb on + strand at 506.655 kb on - strand at 506.663 kb on + strand at 506.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C) remove 505,363 + BACOVA_03667 0.36 -0.9 505,364 - BACOVA_03667 0.36 +0.1 505,407 + BACOVA_03667 0.45 +0.3 505,408 - BACOVA_03667 0.45 -0.4 505,501 + BACOVA_03667 0.63 +0.9 505,539 - BACOVA_03667 0.70 +1.2 505,590 + BACOVA_03667 0.80 +0.1 505,590 + BACOVA_03667 0.80 -0.8 505,590 + BACOVA_03667 0.80 +0.8 505,594 - BACOVA_03667 0.81 +1.1 505,646 + +1.3 505,653 - +0.1 505,657 + +1.3 505,696 + +0.2 505,703 + +0.2 505,709 - +1.7 505,712 - -0.2 505,725 + -0.5 505,725 + -0.0 505,725 + +1.0 505,833 + -1.0 505,917 + -1.8 506,010 - +0.6 506,032 + -0.7 506,038 - -0.3 506,048 - +1.9 506,049 + -1.2 506,055 - -0.9 506,073 + +0.8 506,073 + -0.2 506,074 - -0.8 506,076 + +0.4 506,077 - +0.7 506,123 - +0.3 506,161 + +0.2 506,166 + -0.8 506,183 + -1.9 506,189 - -0.2 506,222 + +0.2 506,257 - +1.7 506,257 - +0.4 506,257 - +0.8 506,269 - +0.4 506,274 - -1.6 506,291 + +1.1 506,291 + +0.1 506,292 - +0.7 506,316 - -0.5 506,330 - -1.9 506,342 + -0.7 506,367 + +1.7 506,371 + +0.4 506,371 + -0.6 506,436 + BACOVA_03668 0.44 +0.6 506,436 + BACOVA_03668 0.44 -0.3 506,437 - BACOVA_03668 0.44 -0.7 506,496 - BACOVA_03668 0.77 -0.2 506,499 + BACOVA_03668 0.78 -0.5 506,503 - BACOVA_03668 0.80 -0.7 506,504 + BACOVA_03668 0.81 -0.7 506,505 - BACOVA_03668 0.81 +1.3 506,505 - BACOVA_03668 0.81 +2.9 506,505 - BACOVA_03668 0.81 +0.1 506,505 - BACOVA_03668 0.81 +0.5 506,508 - BACOVA_03668 0.83 +1.5 506,537 - -0.9 506,542 + -2.5 506,579 + +0.4 506,589 + +0.5 506,590 - -1.6 506,654 + +0.1 506,655 - -1.5 506,663 + +0.8 506,698 + -0.9
Or see this region's nucleotide sequence