Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03416 and BACOVA_03418 are separated by 201 nucleotides BACOVA_03418 and BACOVA_03417 overlap by 26 nucleotides BACOVA_03417 and BACOVA_03419 are separated by 96 nucleotides
BACOVA_03416: BACOVA_03416 - GroES-like protein, at 127,307 to 128,323
_03416
BACOVA_03418: BACOVA_03418 - hypothetical protein, at 128,525 to 128,638
_03418
BACOVA_03417: BACOVA_03417 - glycosyl hydrolase, family 43, at 128,613 to 130,217
_03417
BACOVA_03419: BACOVA_03419 - glycosyl hydrolase family 3 C-terminal domain protein, at 130,314 to 132,899
_03419
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 127.625 kb on - strand, within BACOVA_03416 at 127.668 kb on - strand, within BACOVA_03416 at 127.677 kb on + strand, within BACOVA_03416 at 127.705 kb on + strand, within BACOVA_03416 at 127.706 kb on - strand, within BACOVA_03416 at 127.709 kb on - strand, within BACOVA_03416 at 127.765 kb on - strand, within BACOVA_03416 at 127.794 kb on - strand, within BACOVA_03416 at 127.804 kb on + strand, within BACOVA_03416 at 127.839 kb on + strand, within BACOVA_03416 at 127.915 kb on - strand, within BACOVA_03416 at 127.925 kb on + strand, within BACOVA_03416 at 127.926 kb on - strand, within BACOVA_03416 at 127.934 kb on - strand, within BACOVA_03416 at 127.974 kb on + strand, within BACOVA_03416 at 127.975 kb on - strand, within BACOVA_03416 at 127.975 kb on - strand, within BACOVA_03416 at 128.060 kb on - strand, within BACOVA_03416 at 128.100 kb on + strand, within BACOVA_03416 at 128.188 kb on + strand, within BACOVA_03416 at 128.188 kb on + strand, within BACOVA_03416 at 128.189 kb on - strand, within BACOVA_03416 at 128.193 kb on - strand, within BACOVA_03416 at 128.195 kb on - strand, within BACOVA_03416 at 128.266 kb on + strand at 128.266 kb on + strand at 128.334 kb on + strand at 128.338 kb on - strand at 128.344 kb on - strand at 128.369 kb on - strand at 128.372 kb on + strand at 128.373 kb on - strand at 128.373 kb on - strand at 128.373 kb on - strand at 128.375 kb on + strand at 128.376 kb on - strand at 128.376 kb on - strand at 128.376 kb on - strand at 128.376 kb on - strand at 128.395 kb on - strand at 128.418 kb on - strand at 128.427 kb on + strand at 128.427 kb on + strand at 128.436 kb on + strand at 128.436 kb on + strand at 128.437 kb on - strand at 128.437 kb on - strand at 128.440 kb on + strand at 128.440 kb on + strand at 128.442 kb on + strand at 128.443 kb on - strand at 128.448 kb on + strand at 128.448 kb on + strand at 128.448 kb on + strand at 128.449 kb on - strand at 128.449 kb on - strand at 128.469 kb on + strand at 128.469 kb on + strand at 128.470 kb on - strand at 128.470 kb on - strand at 128.496 kb on - strand at 128.507 kb on + strand at 128.507 kb on + strand at 128.509 kb on + strand at 128.510 kb on - strand at 128.583 kb on + strand, within BACOVA_03418 at 128.588 kb on - strand, within BACOVA_03418 at 128.600 kb on + strand, within BACOVA_03418 at 128.601 kb on - strand, within BACOVA_03418 at 128.615 kb on - strand at 128.618 kb on + strand at 128.619 kb on - strand at 128.648 kb on - strand at 128.702 kb on + strand at 128.703 kb on - strand at 128.732 kb on + strand at 128.740 kb on + strand at 128.741 kb on - strand at 128.778 kb on - strand, within BACOVA_03417 at 128.780 kb on + strand, within BACOVA_03417 at 128.780 kb on + strand, within BACOVA_03417 at 128.780 kb on + strand, within BACOVA_03417 at 128.781 kb on - strand, within BACOVA_03417 at 128.781 kb on - strand, within BACOVA_03417 at 128.781 kb on - strand, within BACOVA_03417 at 128.781 kb on - strand, within BACOVA_03417 at 128.781 kb on - strand, within BACOVA_03417 at 128.781 kb on - strand, within BACOVA_03417 at 128.847 kb on + strand, within BACOVA_03417 at 128.848 kb on - strand, within BACOVA_03417 at 128.851 kb on + strand, within BACOVA_03417 at 128.880 kb on + strand, within BACOVA_03417 at 128.948 kb on + strand, within BACOVA_03417 at 128.949 kb on - strand, within BACOVA_03417 at 128.959 kb on + strand, within BACOVA_03417 at 128.959 kb on + strand, within BACOVA_03417 at 128.959 kb on + strand, within BACOVA_03417 at 128.960 kb on - strand, within BACOVA_03417 at 129.001 kb on - strand, within BACOVA_03417 at 129.002 kb on + strand, within BACOVA_03417 at 129.097 kb on - strand, within BACOVA_03417 at 129.097 kb on - strand, within BACOVA_03417 at 129.151 kb on + strand, within BACOVA_03417 at 129.179 kb on - strand, within BACOVA_03417 at 129.249 kb on + strand, within BACOVA_03417 at 129.278 kb on + strand, within BACOVA_03417 at 129.304 kb on + strand, within BACOVA_03417 at 129.304 kb on + strand, within BACOVA_03417 at 129.305 kb on - strand, within BACOVA_03417 at 129.309 kb on + strand, within BACOVA_03417 at 129.310 kb on - strand, within BACOVA_03417 at 129.310 kb on - strand, within BACOVA_03417 at 129.403 kb on + strand, within BACOVA_03417 at 129.427 kb on - strand, within BACOVA_03417 at 129.486 kb on - strand, within BACOVA_03417 at 129.486 kb on - strand, within BACOVA_03417 at 129.560 kb on + strand, within BACOVA_03417 at 129.561 kb on - strand, within BACOVA_03417 at 129.561 kb on - strand, within BACOVA_03417 at 129.711 kb on - strand, within BACOVA_03417 at 129.747 kb on - strand, within BACOVA_03417 at 129.747 kb on - strand, within BACOVA_03417 at 129.752 kb on - strand, within BACOVA_03417 at 129.830 kb on + strand, within BACOVA_03417 at 129.851 kb on + strand, within BACOVA_03417 at 129.851 kb on + strand, within BACOVA_03417 at 129.852 kb on - strand, within BACOVA_03417 at 129.872 kb on + strand, within BACOVA_03417 at 129.873 kb on - strand, within BACOVA_03417 at 129.908 kb on - strand, within BACOVA_03417 at 129.963 kb on - strand, within BACOVA_03417 at 129.963 kb on - strand, within BACOVA_03417 at 129.964 kb on + strand, within BACOVA_03417 at 129.988 kb on - strand, within BACOVA_03417 at 130.011 kb on - strand, within BACOVA_03417 at 130.041 kb on + strand, within BACOVA_03417 at 130.042 kb on - strand, within BACOVA_03417 at 130.044 kb on - strand, within BACOVA_03417 at 130.067 kb on - strand at 130.124 kb on + strand at 130.135 kb on + strand at 130.139 kb on + strand at 130.139 kb on + strand at 130.139 kb on + strand at 130.171 kb on + strand at 130.172 kb on - strand at 130.191 kb on + strand at 130.192 kb on - strand at 130.216 kb on - strand at 130.226 kb on + strand at 130.226 kb on + strand at 130.231 kb on - strand at 130.256 kb on + strand at 130.299 kb on - strand at 130.301 kb on + strand at 130.306 kb on - strand at 130.306 kb on - strand at 130.373 kb on + strand at 130.373 kb on + strand at 130.468 kb on + strand at 130.469 kb on - strand at 130.509 kb on - strand at 130.515 kb on + strand at 130.516 kb on - strand at 130.516 kb on - strand at 130.605 kb on - strand, within BACOVA_03419 at 130.616 kb on - strand, within BACOVA_03419 at 130.621 kb on - strand, within BACOVA_03419 at 130.734 kb on - strand, within BACOVA_03419 at 130.736 kb on - strand, within BACOVA_03419 at 130.773 kb on + strand, within BACOVA_03419 at 130.852 kb on - strand, within BACOVA_03419 at 130.852 kb on - strand, within BACOVA_03419 at 130.856 kb on + strand, within BACOVA_03419 at 130.857 kb on - strand, within BACOVA_03419 at 130.917 kb on - strand, within BACOVA_03419 at 130.936 kb on + strand, within BACOVA_03419 at 130.937 kb on - strand, within BACOVA_03419 at 130.937 kb on - strand, within BACOVA_03419 at 130.962 kb on + strand, within BACOVA_03419 at 130.962 kb on + strand, within BACOVA_03419 at 131.022 kb on + strand, within BACOVA_03419 at 131.022 kb on + strand, within BACOVA_03419 at 131.023 kb on - strand, within BACOVA_03419 at 131.077 kb on + strand, within BACOVA_03419 at 131.110 kb on + strand, within BACOVA_03419 at 131.111 kb on - strand, within BACOVA_03419 at 131.111 kb on - strand, within BACOVA_03419
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C) remove 127,625 - BACOVA_03416 0.31 -0.4 127,668 - BACOVA_03416 0.35 +0.5 127,677 + BACOVA_03416 0.36 -0.2 127,705 + BACOVA_03416 0.39 +0.7 127,706 - BACOVA_03416 0.39 -0.4 127,709 - BACOVA_03416 0.40 +0.4 127,765 - BACOVA_03416 0.45 -0.0 127,794 - BACOVA_03416 0.48 +0.2 127,804 + BACOVA_03416 0.49 -1.4 127,839 + BACOVA_03416 0.52 +0.9 127,915 - BACOVA_03416 0.60 -0.1 127,925 + BACOVA_03416 0.61 -0.3 127,926 - BACOVA_03416 0.61 -2.6 127,934 - BACOVA_03416 0.62 +0.3 127,974 + BACOVA_03416 0.66 -0.7 127,975 - BACOVA_03416 0.66 +0.6 127,975 - BACOVA_03416 0.66 -0.4 128,060 - BACOVA_03416 0.74 +0.5 128,100 + BACOVA_03416 0.78 +0.4 128,188 + BACOVA_03416 0.87 -1.6 128,188 + BACOVA_03416 0.87 +0.6 128,189 - BACOVA_03416 0.87 -0.3 128,193 - BACOVA_03416 0.87 +0.7 128,195 - BACOVA_03416 0.87 +0.1 128,266 + +0.4 128,266 + +1.0 128,334 + +0.4 128,338 - +0.7 128,344 - +2.1 128,369 - -0.1 128,372 + +0.8 128,373 - +0.8 128,373 - -0.0 128,373 - +1.1 128,375 + -0.3 128,376 - +0.1 128,376 - +1.0 128,376 - -0.5 128,376 - +0.0 128,395 - +1.1 128,418 - -1.1 128,427 + -0.5 128,427 + +0.1 128,436 + -0.3 128,436 + +0.4 128,437 - -1.7 128,437 - -1.9 128,440 + -0.5 128,440 + -0.7 128,442 + +0.7 128,443 - -1.3 128,448 + -0.5 128,448 + +1.1 128,448 + +0.7 128,449 - -2.6 128,449 - -1.3 128,469 + +0.7 128,469 + +0.1 128,470 - -2.8 128,470 - -1.9 128,496 - -1.7 128,507 + -0.4 128,507 + +0.3 128,509 + +0.2 128,510 - -2.4 128,583 + BACOVA_03418 0.51 +0.8 128,588 - BACOVA_03418 0.55 -0.9 128,600 + BACOVA_03418 0.66 +0.1 128,601 - BACOVA_03418 0.67 -3.7 128,615 - -3.5 128,618 + -0.9 128,619 - -3.1 128,648 - -2.4 128,702 + -3.9 128,703 - -0.5 128,732 + -4.3 128,740 + -2.1 128,741 - -1.9 128,778 - BACOVA_03417 0.10 -2.2 128,780 + BACOVA_03417 0.10 -1.4 128,780 + BACOVA_03417 0.10 -0.9 128,780 + BACOVA_03417 0.10 -0.9 128,781 - BACOVA_03417 0.10 +0.1 128,781 - BACOVA_03417 0.10 -1.7 128,781 - BACOVA_03417 0.10 -4.5 128,781 - BACOVA_03417 0.10 -2.8 128,781 - BACOVA_03417 0.10 -1.2 128,781 - BACOVA_03417 0.10 -2.6 128,847 + BACOVA_03417 0.15 -2.2 128,848 - BACOVA_03417 0.15 -1.9 128,851 + BACOVA_03417 0.15 -1.5 128,880 + BACOVA_03417 0.17 -1.2 128,948 + BACOVA_03417 0.21 -1.5 128,949 - BACOVA_03417 0.21 -3.0 128,959 + BACOVA_03417 0.22 -2.5 128,959 + BACOVA_03417 0.22 -3.5 128,959 + BACOVA_03417 0.22 -2.8 128,960 - BACOVA_03417 0.22 -2.6 129,001 - BACOVA_03417 0.24 -0.5 129,002 + BACOVA_03417 0.24 -1.1 129,097 - BACOVA_03417 0.30 -2.1 129,097 - BACOVA_03417 0.30 -1.9 129,151 + BACOVA_03417 0.34 -1.7 129,179 - BACOVA_03417 0.35 -1.5 129,249 + BACOVA_03417 0.40 -1.2 129,278 + BACOVA_03417 0.41 -3.7 129,304 + BACOVA_03417 0.43 -1.1 129,304 + BACOVA_03417 0.43 -3.0 129,305 - BACOVA_03417 0.43 -3.3 129,309 + BACOVA_03417 0.43 -1.3 129,310 - BACOVA_03417 0.43 -1.7 129,310 - BACOVA_03417 0.43 -2.7 129,403 + BACOVA_03417 0.49 -4.3 129,427 - BACOVA_03417 0.51 -0.5 129,486 - BACOVA_03417 0.54 -2.3 129,486 - BACOVA_03417 0.54 -3.3 129,560 + BACOVA_03417 0.59 -3.2 129,561 - BACOVA_03417 0.59 -1.9 129,561 - BACOVA_03417 0.59 +0.1 129,711 - BACOVA_03417 0.68 -3.0 129,747 - BACOVA_03417 0.71 -2.5 129,747 - BACOVA_03417 0.71 -1.0 129,752 - BACOVA_03417 0.71 -2.2 129,830 + BACOVA_03417 0.76 -2.1 129,851 + BACOVA_03417 0.77 -2.7 129,851 + BACOVA_03417 0.77 -0.5 129,852 - BACOVA_03417 0.77 -1.6 129,872 + BACOVA_03417 0.78 -3.2 129,873 - BACOVA_03417 0.79 -3.5 129,908 - BACOVA_03417 0.81 -2.9 129,963 - BACOVA_03417 0.84 -2.5 129,963 - BACOVA_03417 0.84 +0.5 129,964 + BACOVA_03417 0.84 -3.2 129,988 - BACOVA_03417 0.86 -3.8 130,011 - BACOVA_03417 0.87 -3.4 130,041 + BACOVA_03417 0.89 -2.2 130,042 - BACOVA_03417 0.89 -0.5 130,044 - BACOVA_03417 0.89 -4.0 130,067 - -1.4 130,124 + -1.9 130,135 + -2.2 130,139 + -2.2 130,139 + -3.4 130,139 + -1.9 130,171 + +0.1 130,172 - -3.4 130,191 + -1.6 130,192 - -0.5 130,216 - +0.2 130,226 + +0.2 130,226 + -0.9 130,231 - +0.5 130,256 + -1.1 130,299 - -1.8 130,301 + +0.4 130,306 - -0.2 130,306 - +0.1 130,373 + +0.4 130,373 + -0.5 130,468 + -0.0 130,469 - +1.1 130,509 - +0.4 130,515 + +0.5 130,516 - +0.5 130,516 - +0.3 130,605 - BACOVA_03419 0.11 +1.7 130,616 - BACOVA_03419 0.12 +0.0 130,621 - BACOVA_03419 0.12 +1.1 130,734 - BACOVA_03419 0.16 +0.4 130,736 - BACOVA_03419 0.16 +1.4 130,773 + BACOVA_03419 0.18 -0.2 130,852 - BACOVA_03419 0.21 +1.7 130,852 - BACOVA_03419 0.21 +0.5 130,856 + BACOVA_03419 0.21 -0.2 130,857 - BACOVA_03419 0.21 +1.8 130,917 - BACOVA_03419 0.23 +0.3 130,936 + BACOVA_03419 0.24 +2.9 130,937 - BACOVA_03419 0.24 +0.2 130,937 - BACOVA_03419 0.24 +1.1 130,962 + BACOVA_03419 0.25 -0.4 130,962 + BACOVA_03419 0.25 -0.3 131,022 + BACOVA_03419 0.27 +0.3 131,022 + BACOVA_03419 0.27 +0.0 131,023 - BACOVA_03419 0.27 +1.1 131,077 + BACOVA_03419 0.30 +0.3 131,110 + BACOVA_03419 0.31 +0.1 131,111 - BACOVA_03419 0.31 -0.6 131,111 - BACOVA_03419 0.31 -2.1
Or see this region's nucleotide sequence