Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03343

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03342 and BACOVA_03343 overlap by 8 nucleotidesBACOVA_03343 and BACOVA_03344 are separated by 232 nucleotides BACOVA_03342: BACOVA_03342 - hypothetical protein, at 35,820 to 36,914 _03342 BACOVA_03343: BACOVA_03343 - hypothetical protein, at 36,907 to 38,403 _03343 BACOVA_03344: BACOVA_03344 - glycosyl hydrolase family 76, at 38,636 to 39,895 _03344 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 35.969 kb on + strand, within BACOVA_03342at 35.969 kb on + strand, within BACOVA_03342at 35.971 kb on - strand, within BACOVA_03342at 36.019 kb on + strand, within BACOVA_03342at 36.041 kb on - strand, within BACOVA_03342at 36.055 kb on - strand, within BACOVA_03342at 36.117 kb on - strand, within BACOVA_03342at 36.208 kb on - strand, within BACOVA_03342at 36.224 kb on + strand, within BACOVA_03342at 36.225 kb on - strand, within BACOVA_03342at 36.235 kb on - strand, within BACOVA_03342at 36.319 kb on - strand, within BACOVA_03342at 36.337 kb on - strand, within BACOVA_03342at 36.337 kb on - strand, within BACOVA_03342at 36.359 kb on + strand, within BACOVA_03342at 36.376 kb on - strand, within BACOVA_03342at 36.376 kb on - strand, within BACOVA_03342at 36.383 kb on + strand, within BACOVA_03342at 36.383 kb on + strand, within BACOVA_03342at 36.402 kb on + strand, within BACOVA_03342at 36.495 kb on + strand, within BACOVA_03342at 36.496 kb on - strand, within BACOVA_03342at 36.496 kb on - strand, within BACOVA_03342at 36.594 kb on + strand, within BACOVA_03342at 36.595 kb on - strand, within BACOVA_03342at 36.595 kb on - strand, within BACOVA_03342at 36.597 kb on - strand, within BACOVA_03342at 36.618 kb on + strand, within BACOVA_03342at 36.620 kb on + strand, within BACOVA_03342at 36.649 kb on - strand, within BACOVA_03342at 36.650 kb on + strand, within BACOVA_03342at 36.650 kb on + strand, within BACOVA_03342at 36.651 kb on - strand, within BACOVA_03342at 36.665 kb on + strand, within BACOVA_03342at 36.666 kb on - strand, within BACOVA_03342at 36.666 kb on - strand, within BACOVA_03342at 36.666 kb on - strand, within BACOVA_03342at 36.739 kb on - strand, within BACOVA_03342at 36.756 kb on - strand, within BACOVA_03342at 36.844 kb on + strandat 36.845 kb on - strandat 36.847 kb on + strandat 36.847 kb on + strandat 36.888 kb on + strandat 36.889 kb on - strandat 36.902 kb on + strandat 36.913 kb on - strandat 36.920 kb on + strandat 36.952 kb on - strandat 36.952 kb on - strandat 36.954 kb on + strandat 36.954 kb on + strandat 37.000 kb on - strandat 37.013 kb on + strandat 37.014 kb on - strandat 37.045 kb on + strandat 37.056 kb on + strandat 37.064 kb on + strand, within BACOVA_03343at 37.064 kb on + strand, within BACOVA_03343at 37.065 kb on - strand, within BACOVA_03343at 37.065 kb on - strand, within BACOVA_03343at 37.100 kb on - strand, within BACOVA_03343at 37.142 kb on - strand, within BACOVA_03343at 37.161 kb on + strand, within BACOVA_03343at 37.162 kb on - strand, within BACOVA_03343at 37.162 kb on - strand, within BACOVA_03343at 37.164 kb on - strand, within BACOVA_03343at 37.167 kb on - strand, within BACOVA_03343at 37.176 kb on + strand, within BACOVA_03343at 37.177 kb on - strand, within BACOVA_03343at 37.177 kb on - strand, within BACOVA_03343at 37.179 kb on + strand, within BACOVA_03343at 37.198 kb on - strand, within BACOVA_03343at 37.263 kb on - strand, within BACOVA_03343at 37.327 kb on + strand, within BACOVA_03343at 37.329 kb on + strand, within BACOVA_03343at 37.330 kb on - strand, within BACOVA_03343at 37.330 kb on - strand, within BACOVA_03343at 37.449 kb on + strand, within BACOVA_03343at 37.501 kb on - strand, within BACOVA_03343at 37.501 kb on - strand, within BACOVA_03343at 37.516 kb on + strand, within BACOVA_03343at 37.586 kb on + strand, within BACOVA_03343at 37.635 kb on - strand, within BACOVA_03343at 37.647 kb on + strand, within BACOVA_03343at 37.783 kb on + strand, within BACOVA_03343at 37.783 kb on + strand, within BACOVA_03343at 37.813 kb on - strand, within BACOVA_03343at 37.813 kb on - strand, within BACOVA_03343at 37.857 kb on + strand, within BACOVA_03343at 37.934 kb on - strand, within BACOVA_03343at 37.996 kb on + strand, within BACOVA_03343at 37.997 kb on - strand, within BACOVA_03343at 38.059 kb on + strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.060 kb on - strand, within BACOVA_03343at 38.061 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.076 kb on + strand, within BACOVA_03343at 38.077 kb on - strand, within BACOVA_03343at 38.082 kb on + strand, within BACOVA_03343at 38.082 kb on + strand, within BACOVA_03343at 38.085 kb on + strand, within BACOVA_03343at 38.133 kb on + strand, within BACOVA_03343at 38.157 kb on - strand, within BACOVA_03343at 38.202 kb on - strand, within BACOVA_03343at 38.203 kb on + strand, within BACOVA_03343at 38.203 kb on + strand, within BACOVA_03343at 38.204 kb on - strand, within BACOVA_03343at 38.212 kb on + strand, within BACOVA_03343at 38.214 kb on + strand, within BACOVA_03343at 38.215 kb on - strand, within BACOVA_03343at 38.215 kb on - strand, within BACOVA_03343at 38.215 kb on - strand, within BACOVA_03343at 38.234 kb on + strand, within BACOVA_03343at 38.234 kb on + strand, within BACOVA_03343at 38.244 kb on + strand, within BACOVA_03343at 38.318 kb on + strandat 38.349 kb on - strandat 38.438 kb on - strandat 38.451 kb on - strandat 38.462 kb on - strandat 38.483 kb on + strandat 38.501 kb on + strandat 38.501 kb on + strandat 38.504 kb on + strandat 38.513 kb on - strandat 38.555 kb on - strandat 38.565 kb on + strandat 38.566 kb on - strandat 38.618 kb on - strandat 38.619 kb on + strandat 38.619 kb on + strandat 38.626 kb on - strandat 38.627 kb on + strandat 38.632 kb on + strandat 38.667 kb on + strandat 38.667 kb on + strandat 38.670 kb on + strandat 38.686 kb on + strandat 38.687 kb on - strandat 38.689 kb on + strandat 38.690 kb on - strandat 38.690 kb on - strandat 38.740 kb on + strandat 38.777 kb on - strand, within BACOVA_03344at 38.777 kb on - strand, within BACOVA_03344at 38.782 kb on + strand, within BACOVA_03344at 38.783 kb on - strand, within BACOVA_03344at 38.787 kb on + strand, within BACOVA_03344at 38.801 kb on - strand, within BACOVA_03344at 38.805 kb on - strand, within BACOVA_03344at 38.882 kb on - strand, within BACOVA_03344at 38.912 kb on - strand, within BACOVA_03344at 38.951 kb on + strand, within BACOVA_03344at 38.952 kb on - strand, within BACOVA_03344at 38.952 kb on - strand, within BACOVA_03344at 38.956 kb on + strand, within BACOVA_03344at 38.999 kb on + strand, within BACOVA_03344at 39.000 kb on - strand, within BACOVA_03344at 39.023 kb on - strand, within BACOVA_03344at 39.073 kb on + strand, within BACOVA_03344at 39.137 kb on - strand, within BACOVA_03344at 39.208 kb on + strand, within BACOVA_03344at 39.209 kb on - strand, within BACOVA_03344at 39.277 kb on + strand, within BACOVA_03344at 39.277 kb on + strand, within BACOVA_03344at 39.278 kb on - strand, within BACOVA_03344at 39.278 kb on - strand, within BACOVA_03344at 39.278 kb on - strand, within BACOVA_03344at 39.383 kb on + strand, within BACOVA_03344at 39.397 kb on + strand, within BACOVA_03344at 39.398 kb on - strand, within BACOVA_03344

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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35,969 + BACOVA_03342 0.14 -0.9
35,969 + BACOVA_03342 0.14 -2.2
35,971 - BACOVA_03342 0.14 -1.0
36,019 + BACOVA_03342 0.18 -0.8
36,041 - BACOVA_03342 0.20 -0.4
36,055 - BACOVA_03342 0.21 -1.2
36,117 - BACOVA_03342 0.27 +0.3
36,208 - BACOVA_03342 0.35 +0.3
36,224 + BACOVA_03342 0.37 +0.1
36,225 - BACOVA_03342 0.37 +0.7
36,235 - BACOVA_03342 0.38 +0.1
36,319 - BACOVA_03342 0.46 +1.3
36,337 - BACOVA_03342 0.47 -0.2
36,337 - BACOVA_03342 0.47 +0.2
36,359 + BACOVA_03342 0.49 -3.5
36,376 - BACOVA_03342 0.51 +1.1
36,376 - BACOVA_03342 0.51 +0.2
36,383 + BACOVA_03342 0.51 -0.5
36,383 + BACOVA_03342 0.51 +0.6
36,402 + BACOVA_03342 0.53 -2.7
36,495 + BACOVA_03342 0.62 -2.3
36,496 - BACOVA_03342 0.62 +0.8
36,496 - BACOVA_03342 0.62 -0.5
36,594 + BACOVA_03342 0.71 -0.9
36,595 - BACOVA_03342 0.71 +0.2
36,595 - BACOVA_03342 0.71 +0.5
36,597 - BACOVA_03342 0.71 +0.1
36,618 + BACOVA_03342 0.73 -1.0
36,620 + BACOVA_03342 0.73 -0.5
36,649 - BACOVA_03342 0.76 +0.7
36,650 + BACOVA_03342 0.76 -2.4
36,650 + BACOVA_03342 0.76 -3.1
36,651 - BACOVA_03342 0.76 -1.1
36,665 + BACOVA_03342 0.77 -1.7
36,666 - BACOVA_03342 0.77 +1.2
36,666 - BACOVA_03342 0.77 +1.4
36,666 - BACOVA_03342 0.77 -0.2
36,739 - BACOVA_03342 0.84 -0.2
36,756 - BACOVA_03342 0.85 +0.2
36,844 + -1.7
36,845 - -0.1
36,847 + -2.3
36,847 + -2.9
36,888 + -3.0
36,889 - +0.5
36,902 + -1.1
36,913 - +0.1
36,920 + -1.6
36,952 - +0.6
36,952 - +0.3
36,954 + -0.5
36,954 + -1.2
37,000 - +0.1
37,013 + -0.6
37,014 - -0.8
37,045 + -0.6
37,056 + -0.4
37,064 + BACOVA_03343 0.10 -2.1
37,064 + BACOVA_03343 0.10 -0.7
37,065 - BACOVA_03343 0.11 -1.0
37,065 - BACOVA_03343 0.11 -0.7
37,100 - BACOVA_03343 0.13 -0.5
37,142 - BACOVA_03343 0.16 +0.0
37,161 + BACOVA_03343 0.17 -2.1
37,162 - BACOVA_03343 0.17 +1.0
37,162 - BACOVA_03343 0.17 +0.2
37,164 - BACOVA_03343 0.17 +1.2
37,167 - BACOVA_03343 0.17 +0.3
37,176 + BACOVA_03343 0.18 -1.3
37,177 - BACOVA_03343 0.18 -0.1
37,177 - BACOVA_03343 0.18 -0.1
37,179 + BACOVA_03343 0.18 -0.9
37,198 - BACOVA_03343 0.19 +0.1
37,263 - BACOVA_03343 0.24 -0.3
37,327 + BACOVA_03343 0.28 -1.0
37,329 + BACOVA_03343 0.28 -2.2
37,330 - BACOVA_03343 0.28 -0.4
37,330 - BACOVA_03343 0.28 -0.1
37,449 + BACOVA_03343 0.36 -1.6
37,501 - BACOVA_03343 0.40 -0.3
37,501 - BACOVA_03343 0.40 +1.0
37,516 + BACOVA_03343 0.41 -2.2
37,586 + BACOVA_03343 0.45 -1.3
37,635 - BACOVA_03343 0.49 -0.4
37,647 + BACOVA_03343 0.49 -0.6
37,783 + BACOVA_03343 0.59 -1.9
37,783 + BACOVA_03343 0.59 -1.5
37,813 - BACOVA_03343 0.61 -0.5
37,813 - BACOVA_03343 0.61 -0.0
37,857 + BACOVA_03343 0.63 -0.5
37,934 - BACOVA_03343 0.69 +0.1
37,996 + BACOVA_03343 0.73 -0.8
37,997 - BACOVA_03343 0.73 -0.6
38,059 + BACOVA_03343 0.77 -3.2
38,060 - BACOVA_03343 0.77 -0.8
38,060 - BACOVA_03343 0.77 +1.4
38,060 - BACOVA_03343 0.77 +0.7
38,060 - BACOVA_03343 0.77 +0.4
38,060 - BACOVA_03343 0.77 +0.4
38,060 - BACOVA_03343 0.77 +0.1
38,061 + BACOVA_03343 0.77 -0.9
38,076 + BACOVA_03343 0.78 -2.6
38,076 + BACOVA_03343 0.78 -0.5
38,076 + BACOVA_03343 0.78 -1.5
38,076 + BACOVA_03343 0.78 -2.8
38,077 - BACOVA_03343 0.78 -0.6
38,082 + BACOVA_03343 0.78 -0.7
38,082 + BACOVA_03343 0.78 -2.8
38,085 + BACOVA_03343 0.79 -1.9
38,133 + BACOVA_03343 0.82 +0.1
38,157 - BACOVA_03343 0.84 +1.1
38,202 - BACOVA_03343 0.87 +1.1
38,203 + BACOVA_03343 0.87 -1.2
38,203 + BACOVA_03343 0.87 -1.2
38,204 - BACOVA_03343 0.87 -0.5
38,212 + BACOVA_03343 0.87 -1.2
38,214 + BACOVA_03343 0.87 -0.9
38,215 - BACOVA_03343 0.87 -0.5
38,215 - BACOVA_03343 0.87 -0.6
38,215 - BACOVA_03343 0.87 +0.2
38,234 + BACOVA_03343 0.89 -1.8
38,234 + BACOVA_03343 0.89 -3.6
38,244 + BACOVA_03343 0.89 -0.7
38,318 + +1.1
38,349 - +1.1
38,438 - -2.7
38,451 - +0.2
38,462 - +1.1
38,483 + -0.2
38,501 + -1.9
38,501 + -0.3
38,504 + -1.1
38,513 - +1.1
38,555 - +0.2
38,565 + -1.9
38,566 - -0.4
38,618 - +0.7
38,619 + +1.7
38,619 + +0.1
38,626 - +0.0
38,627 + -0.2
38,632 + +0.4
38,667 + -2.1
38,667 + -0.5
38,670 + -1.5
38,686 + -1.8
38,687 - +0.5
38,689 + -1.7
38,690 - -1.0
38,690 - -1.4
38,740 + -0.6
38,777 - BACOVA_03344 0.11 +1.2
38,777 - BACOVA_03344 0.11 -0.5
38,782 + BACOVA_03344 0.12 -1.7
38,783 - BACOVA_03344 0.12 -0.5
38,787 + BACOVA_03344 0.12 -1.7
38,801 - BACOVA_03344 0.13 +0.4
38,805 - BACOVA_03344 0.13 -0.8
38,882 - BACOVA_03344 0.20 -0.0
38,912 - BACOVA_03344 0.22 -0.5
38,951 + BACOVA_03344 0.25 -0.1
38,952 - BACOVA_03344 0.25 -0.4
38,952 - BACOVA_03344 0.25 -0.7
38,956 + BACOVA_03344 0.25 -1.1
38,999 + BACOVA_03344 0.29 -3.3
39,000 - BACOVA_03344 0.29 +2.4
39,023 - BACOVA_03344 0.31 +0.1
39,073 + BACOVA_03344 0.35 -1.9
39,137 - BACOVA_03344 0.40 +0.2
39,208 + BACOVA_03344 0.45 -2.4
39,209 - BACOVA_03344 0.45 -0.7
39,277 + BACOVA_03344 0.51 -4.0
39,277 + BACOVA_03344 0.51 -3.1
39,278 - BACOVA_03344 0.51 -0.8
39,278 - BACOVA_03344 0.51 -0.9
39,278 - BACOVA_03344 0.51 -0.4
39,383 + BACOVA_03344 0.59 -2.5
39,397 + BACOVA_03344 0.60 -2.7
39,398 - BACOVA_03344 0.60 +0.1

Or see this region's nucleotide sequence