Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02946 and BACOVA_02947 overlap by 1 nucleotides BACOVA_02947 and BACOVA_02948 are separated by 58 nucleotides
BACOVA_02946: BACOVA_02946 - SusD family protein, at 16,807 to 18,492
_02946
BACOVA_02947: BACOVA_02947 - hypothetical protein, at 18,492 to 19,907
_02947
BACOVA_02948: BACOVA_02948 - hypothetical protein, at 19,966 to 21,432
_02948
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.512 kb on + strand, within BACOVA_02946 at 17.529 kb on + strand, within BACOVA_02946 at 17.552 kb on - strand, within BACOVA_02946 at 17.552 kb on - strand, within BACOVA_02946 at 17.564 kb on - strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.573 kb on + strand, within BACOVA_02946 at 17.574 kb on - strand, within BACOVA_02946 at 17.574 kb on - strand, within BACOVA_02946 at 17.574 kb on - strand, within BACOVA_02946 at 17.605 kb on + strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.609 kb on - strand, within BACOVA_02946 at 17.610 kb on + strand, within BACOVA_02946 at 17.610 kb on + strand, within BACOVA_02946 at 17.611 kb on - strand, within BACOVA_02946 at 17.611 kb on - strand, within BACOVA_02946 at 17.620 kb on + strand, within BACOVA_02946 at 17.620 kb on + strand, within BACOVA_02946 at 17.621 kb on - strand, within BACOVA_02946 at 17.621 kb on - strand, within BACOVA_02946 at 17.624 kb on - strand, within BACOVA_02946 at 17.640 kb on + strand, within BACOVA_02946 at 17.640 kb on + strand, within BACOVA_02946 at 17.644 kb on + strand, within BACOVA_02946 at 17.644 kb on + strand, within BACOVA_02946 at 17.645 kb on - strand, within BACOVA_02946 at 17.645 kb on - strand, within BACOVA_02946 at 17.645 kb on - strand, within BACOVA_02946 at 17.665 kb on + strand, within BACOVA_02946 at 17.743 kb on - strand, within BACOVA_02946 at 17.743 kb on - strand, within BACOVA_02946 at 17.743 kb on - strand, within BACOVA_02946 at 17.781 kb on + strand, within BACOVA_02946 at 17.781 kb on + strand, within BACOVA_02946 at 17.781 kb on + strand, within BACOVA_02946 at 17.869 kb on + strand, within BACOVA_02946 at 17.926 kb on - strand, within BACOVA_02946 at 17.926 kb on - strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.929 kb on + strand, within BACOVA_02946 at 17.930 kb on - strand, within BACOVA_02946 at 17.930 kb on - strand, within BACOVA_02946 at 17.972 kb on - strand, within BACOVA_02946 at 17.972 kb on - strand, within BACOVA_02946 at 17.976 kb on + strand, within BACOVA_02946 at 17.977 kb on - strand, within BACOVA_02946 at 18.080 kb on + strand, within BACOVA_02946 at 18.080 kb on + strand, within BACOVA_02946 at 18.080 kb on + strand, within BACOVA_02946 at 18.104 kb on + strand, within BACOVA_02946 at 18.105 kb on - strand, within BACOVA_02946 at 18.105 kb on - strand, within BACOVA_02946 at 18.116 kb on - strand, within BACOVA_02946 at 18.132 kb on - strand, within BACOVA_02946 at 18.190 kb on - strand, within BACOVA_02946 at 18.248 kb on + strand, within BACOVA_02946 at 18.249 kb on - strand, within BACOVA_02946 at 18.257 kb on + strand, within BACOVA_02946 at 18.287 kb on - strand, within BACOVA_02946 at 18.301 kb on - strand, within BACOVA_02946 at 18.321 kb on + strand, within BACOVA_02946 at 18.322 kb on - strand, within BACOVA_02946 at 18.322 kb on - strand, within BACOVA_02946 at 18.328 kb on + strand at 18.328 kb on + strand at 18.340 kb on - strand at 18.377 kb on - strand at 18.384 kb on + strand at 18.385 kb on - strand at 18.395 kb on - strand at 18.438 kb on - strand at 18.491 kb on - strand at 18.506 kb on + strand at 18.517 kb on + strand at 18.518 kb on - strand at 18.546 kb on + strand at 18.546 kb on + strand at 18.546 kb on + strand at 18.547 kb on - strand at 18.547 kb on - strand at 18.547 kb on - strand at 18.547 kb on - strand at 18.550 kb on + strand at 18.550 kb on + strand at 18.551 kb on - strand at 18.551 kb on - strand at 18.599 kb on + strand at 18.600 kb on - strand at 18.600 kb on - strand at 18.629 kb on + strand at 18.644 kb on + strand, within BACOVA_02947 at 18.704 kb on + strand, within BACOVA_02947 at 18.738 kb on + strand, within BACOVA_02947 at 18.738 kb on + strand, within BACOVA_02947 at 18.741 kb on - strand, within BACOVA_02947 at 18.741 kb on - strand, within BACOVA_02947 at 18.764 kb on - strand, within BACOVA_02947 at 18.845 kb on + strand, within BACOVA_02947 at 18.845 kb on + strand, within BACOVA_02947 at 18.846 kb on - strand, within BACOVA_02947 at 18.851 kb on - strand, within BACOVA_02947 at 18.890 kb on - strand, within BACOVA_02947 at 18.893 kb on + strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 18.894 kb on - strand, within BACOVA_02947 at 19.057 kb on - strand, within BACOVA_02947 at 19.058 kb on + strand, within BACOVA_02947 at 19.127 kb on - strand, within BACOVA_02947 at 19.206 kb on - strand, within BACOVA_02947 at 19.229 kb on - strand, within BACOVA_02947 at 19.237 kb on - strand, within BACOVA_02947 at 19.238 kb on + strand, within BACOVA_02947 at 19.239 kb on - strand, within BACOVA_02947 at 19.239 kb on - strand, within BACOVA_02947 at 19.239 kb on - strand, within BACOVA_02947 at 19.263 kb on - strand, within BACOVA_02947 at 19.313 kb on + strand, within BACOVA_02947 at 19.404 kb on - strand, within BACOVA_02947 at 19.416 kb on - strand, within BACOVA_02947 at 19.484 kb on - strand, within BACOVA_02947 at 19.488 kb on + strand, within BACOVA_02947 at 19.488 kb on + strand, within BACOVA_02947 at 19.489 kb on - strand, within BACOVA_02947 at 19.490 kb on + strand, within BACOVA_02947 at 19.501 kb on - strand, within BACOVA_02947 at 19.520 kb on + strand, within BACOVA_02947 at 19.520 kb on + strand, within BACOVA_02947 at 19.521 kb on - strand, within BACOVA_02947 at 19.521 kb on - strand, within BACOVA_02947 at 19.524 kb on + strand, within BACOVA_02947 at 19.524 kb on + strand, within BACOVA_02947 at 19.524 kb on + strand, within BACOVA_02947 at 19.526 kb on + strand, within BACOVA_02947 at 19.527 kb on - strand, within BACOVA_02947 at 19.567 kb on - strand, within BACOVA_02947 at 19.568 kb on + strand, within BACOVA_02947 at 19.569 kb on - strand, within BACOVA_02947 at 19.605 kb on + strand, within BACOVA_02947 at 19.605 kb on + strand, within BACOVA_02947 at 19.606 kb on - strand, within BACOVA_02947 at 19.606 kb on - strand, within BACOVA_02947 at 19.695 kb on + strand, within BACOVA_02947 at 19.696 kb on - strand, within BACOVA_02947 at 19.696 kb on - strand, within BACOVA_02947 at 19.709 kb on - strand, within BACOVA_02947 at 19.728 kb on - strand, within BACOVA_02947 at 19.770 kb on + strand at 19.854 kb on - strand at 19.859 kb on - strand at 19.862 kb on + strand at 19.886 kb on - strand at 19.906 kb on - strand at 19.906 kb on - strand at 19.922 kb on + strand at 19.948 kb on - strand at 19.953 kb on + strand at 19.953 kb on + strand at 19.953 kb on + strand at 19.954 kb on - strand at 19.954 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.959 kb on + strand at 19.961 kb on + strand at 19.962 kb on - strand at 19.962 kb on - strand at 19.962 kb on - strand at 19.975 kb on + strand at 19.976 kb on - strand at 19.976 kb on - strand at 19.981 kb on - strand at 19.981 kb on - strand at 20.068 kb on - strand at 20.241 kb on + strand, within BACOVA_02948 at 20.256 kb on + strand, within BACOVA_02948 at 20.257 kb on - strand, within BACOVA_02948 at 20.326 kb on + strand, within BACOVA_02948 at 20.359 kb on - strand, within BACOVA_02948 at 20.360 kb on + strand, within BACOVA_02948 at 20.360 kb on + strand, within BACOVA_02948 at 20.361 kb on - strand, within BACOVA_02948 at 20.361 kb on - strand, within BACOVA_02948 at 20.361 kb on - strand, within BACOVA_02948 at 20.428 kb on - strand, within BACOVA_02948 at 20.431 kb on - strand, within BACOVA_02948 at 20.435 kb on - strand, within BACOVA_02948 at 20.445 kb on + strand, within BACOVA_02948 at 20.447 kb on - strand, within BACOVA_02948 at 20.510 kb on + strand, within BACOVA_02948 at 20.520 kb on + strand, within BACOVA_02948 at 20.521 kb on - strand, within BACOVA_02948 at 20.588 kb on - strand, within BACOVA_02948 at 20.594 kb on - strand, within BACOVA_02948 at 20.658 kb on + strand, within BACOVA_02948 at 20.696 kb on + strand, within BACOVA_02948 at 20.696 kb on + strand, within BACOVA_02948 at 20.739 kb on + strand, within BACOVA_02948 at 20.740 kb on - strand, within BACOVA_02948 at 20.742 kb on - strand, within BACOVA_02948 at 20.792 kb on - strand, within BACOVA_02948 at 20.796 kb on + strand, within BACOVA_02948 at 20.797 kb on - strand, within BACOVA_02948 at 20.797 kb on - strand, within BACOVA_02948 at 20.802 kb on - strand, within BACOVA_02948 at 20.808 kb on - strand, within BACOVA_02948 at 20.861 kb on + strand, within BACOVA_02948 at 20.884 kb on - strand, within BACOVA_02948 at 20.884 kb on - strand, within BACOVA_02948 at 20.886 kb on + strand, within BACOVA_02948
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C) remove 17,512 + BACOVA_02946 0.42 +1.0 17,529 + BACOVA_02946 0.43 +0.4 17,552 - BACOVA_02946 0.44 +0.0 17,552 - BACOVA_02946 0.44 +0.1 17,564 - BACOVA_02946 0.45 -2.4 17,573 + BACOVA_02946 0.45 +0.3 17,573 + BACOVA_02946 0.45 -2.3 17,573 + BACOVA_02946 0.45 -0.6 17,573 + BACOVA_02946 0.45 -1.3 17,574 - BACOVA_02946 0.45 -0.2 17,574 - BACOVA_02946 0.45 +2.2 17,574 - BACOVA_02946 0.45 +0.5 17,605 + BACOVA_02946 0.47 +0.1 17,609 - BACOVA_02946 0.48 +0.7 17,609 - BACOVA_02946 0.48 -1.6 17,609 - BACOVA_02946 0.48 -0.3 17,609 - BACOVA_02946 0.48 -0.6 17,609 - BACOVA_02946 0.48 -0.6 17,609 - BACOVA_02946 0.48 +1.2 17,610 + BACOVA_02946 0.48 +0.1 17,610 + BACOVA_02946 0.48 -1.1 17,611 - BACOVA_02946 0.48 -0.2 17,611 - BACOVA_02946 0.48 -0.1 17,620 + BACOVA_02946 0.48 -0.4 17,620 + BACOVA_02946 0.48 +0.9 17,621 - BACOVA_02946 0.48 -0.1 17,621 - BACOVA_02946 0.48 +0.2 17,624 - BACOVA_02946 0.48 +1.0 17,640 + BACOVA_02946 0.49 +0.2 17,640 + BACOVA_02946 0.49 +0.2 17,644 + BACOVA_02946 0.50 +0.8 17,644 + BACOVA_02946 0.50 +0.3 17,645 - BACOVA_02946 0.50 +0.1 17,645 - BACOVA_02946 0.50 -0.1 17,645 - BACOVA_02946 0.50 +0.6 17,665 + BACOVA_02946 0.51 -0.6 17,743 - BACOVA_02946 0.56 +0.3 17,743 - BACOVA_02946 0.56 +0.1 17,743 - BACOVA_02946 0.56 +0.2 17,781 + BACOVA_02946 0.58 -0.1 17,781 + BACOVA_02946 0.58 +1.7 17,781 + BACOVA_02946 0.58 -0.0 17,869 + BACOVA_02946 0.63 -1.1 17,926 - BACOVA_02946 0.66 -0.3 17,926 - BACOVA_02946 0.66 -0.9 17,929 + BACOVA_02946 0.67 -0.0 17,929 + BACOVA_02946 0.67 -0.6 17,929 + BACOVA_02946 0.67 +0.0 17,929 + BACOVA_02946 0.67 +0.1 17,930 - BACOVA_02946 0.67 +0.0 17,930 - BACOVA_02946 0.67 +0.3 17,972 - BACOVA_02946 0.69 -1.3 17,972 - BACOVA_02946 0.69 +0.0 17,976 + BACOVA_02946 0.69 +0.8 17,977 - BACOVA_02946 0.69 +1.6 18,080 + BACOVA_02946 0.76 -0.5 18,080 + BACOVA_02946 0.76 +0.0 18,080 + BACOVA_02946 0.76 -0.4 18,104 + BACOVA_02946 0.77 +1.0 18,105 - BACOVA_02946 0.77 -1.3 18,105 - BACOVA_02946 0.77 -1.3 18,116 - BACOVA_02946 0.78 +1.0 18,132 - BACOVA_02946 0.79 -0.8 18,190 - BACOVA_02946 0.82 +0.3 18,248 + BACOVA_02946 0.85 -2.3 18,249 - BACOVA_02946 0.86 +0.3 18,257 + BACOVA_02946 0.86 -1.3 18,287 - BACOVA_02946 0.88 -0.6 18,301 - BACOVA_02946 0.89 -0.1 18,321 + BACOVA_02946 0.90 +0.9 18,322 - BACOVA_02946 0.90 -1.0 18,322 - BACOVA_02946 0.90 +0.1 18,328 + -1.4 18,328 + +1.5 18,340 - +0.4 18,377 - +0.4 18,384 + +0.1 18,385 - -2.3 18,395 - -2.9 18,438 - +0.2 18,491 - -0.3 18,506 + -0.0 18,517 + +0.4 18,518 - +0.0 18,546 + -1.2 18,546 + -1.0 18,546 + -0.1 18,547 - +0.4 18,547 - +0.0 18,547 - +1.6 18,547 - -0.5 18,550 + +0.3 18,550 + -0.6 18,551 - -0.2 18,551 - -0.5 18,599 + -0.6 18,600 - +0.5 18,600 - +1.6 18,629 + +1.1 18,644 + BACOVA_02947 0.11 +0.7 18,704 + BACOVA_02947 0.15 -0.2 18,738 + BACOVA_02947 0.17 +0.6 18,738 + BACOVA_02947 0.17 -0.8 18,741 - BACOVA_02947 0.18 +0.9 18,741 - BACOVA_02947 0.18 -0.0 18,764 - BACOVA_02947 0.19 +0.4 18,845 + BACOVA_02947 0.25 -2.1 18,845 + BACOVA_02947 0.25 +0.4 18,846 - BACOVA_02947 0.25 -0.3 18,851 - BACOVA_02947 0.25 -0.4 18,890 - BACOVA_02947 0.28 -1.3 18,893 + BACOVA_02947 0.28 +2.0 18,894 - BACOVA_02947 0.28 -0.3 18,894 - BACOVA_02947 0.28 -1.3 18,894 - BACOVA_02947 0.28 +0.4 18,894 - BACOVA_02947 0.28 +0.6 18,894 - BACOVA_02947 0.28 -0.4 19,057 - BACOVA_02947 0.40 -0.1 19,058 + BACOVA_02947 0.40 -1.6 19,127 - BACOVA_02947 0.45 -0.3 19,206 - BACOVA_02947 0.50 +2.0 19,229 - BACOVA_02947 0.52 -0.6 19,237 - BACOVA_02947 0.53 +0.7 19,238 + BACOVA_02947 0.53 -0.6 19,239 - BACOVA_02947 0.53 -0.7 19,239 - BACOVA_02947 0.53 +0.8 19,239 - BACOVA_02947 0.53 +0.0 19,263 - BACOVA_02947 0.54 -0.4 19,313 + BACOVA_02947 0.58 -1.1 19,404 - BACOVA_02947 0.64 +1.0 19,416 - BACOVA_02947 0.65 -0.2 19,484 - BACOVA_02947 0.70 +0.8 19,488 + BACOVA_02947 0.70 -1.8 19,488 + BACOVA_02947 0.70 -3.0 19,489 - BACOVA_02947 0.70 -0.8 19,490 + BACOVA_02947 0.70 -0.8 19,501 - BACOVA_02947 0.71 +0.2 19,520 + BACOVA_02947 0.73 -1.2 19,520 + BACOVA_02947 0.73 +0.8 19,521 - BACOVA_02947 0.73 -1.0 19,521 - BACOVA_02947 0.73 +0.2 19,524 + BACOVA_02947 0.73 +2.0 19,524 + BACOVA_02947 0.73 +0.0 19,524 + BACOVA_02947 0.73 -2.1 19,526 + BACOVA_02947 0.73 -2.6 19,527 - BACOVA_02947 0.73 +0.3 19,567 - BACOVA_02947 0.76 -0.3 19,568 + BACOVA_02947 0.76 -1.2 19,569 - BACOVA_02947 0.76 +0.5 19,605 + BACOVA_02947 0.79 +0.0 19,605 + BACOVA_02947 0.79 -0.8 19,606 - BACOVA_02947 0.79 +1.1 19,606 - BACOVA_02947 0.79 +0.8 19,695 + BACOVA_02947 0.85 -1.5 19,696 - BACOVA_02947 0.85 -0.3 19,696 - BACOVA_02947 0.85 -1.2 19,709 - BACOVA_02947 0.86 -0.4 19,728 - BACOVA_02947 0.87 -0.6 19,770 + -0.4 19,854 - +1.6 19,859 - +0.0 19,862 + +0.7 19,886 - -0.2 19,906 - -2.9 19,906 - +1.8 19,922 + -0.3 19,948 - -0.6 19,953 + -0.8 19,953 + +0.0 19,953 + +0.2 19,954 - +1.0 19,954 - -1.0 19,958 - +0.5 19,958 - +0.4 19,958 - -0.5 19,959 + +0.6 19,961 + +0.0 19,962 - +0.3 19,962 - -0.7 19,962 - +1.5 19,975 + -1.3 19,976 - +0.0 19,976 - +0.2 19,981 - +1.0 19,981 - +2.6 20,068 - -0.2 20,241 + BACOVA_02948 0.19 +0.3 20,256 + BACOVA_02948 0.20 -0.6 20,257 - BACOVA_02948 0.20 -0.6 20,326 + BACOVA_02948 0.25 -1.0 20,359 - BACOVA_02948 0.27 -1.0 20,360 + BACOVA_02948 0.27 -0.1 20,360 + BACOVA_02948 0.27 -0.9 20,361 - BACOVA_02948 0.27 +0.4 20,361 - BACOVA_02948 0.27 +0.3 20,361 - BACOVA_02948 0.27 +0.8 20,428 - BACOVA_02948 0.31 +0.6 20,431 - BACOVA_02948 0.32 +0.4 20,435 - BACOVA_02948 0.32 -1.1 20,445 + BACOVA_02948 0.33 +0.1 20,447 - BACOVA_02948 0.33 +1.2 20,510 + BACOVA_02948 0.37 -0.6 20,520 + BACOVA_02948 0.38 -1.5 20,521 - BACOVA_02948 0.38 -1.6 20,588 - BACOVA_02948 0.42 +1.8 20,594 - BACOVA_02948 0.43 +0.7 20,658 + BACOVA_02948 0.47 -1.0 20,696 + BACOVA_02948 0.50 +1.0 20,696 + BACOVA_02948 0.50 +1.4 20,739 + BACOVA_02948 0.53 -1.4 20,740 - BACOVA_02948 0.53 +0.0 20,742 - BACOVA_02948 0.53 -0.2 20,792 - BACOVA_02948 0.56 -1.0 20,796 + BACOVA_02948 0.57 +1.4 20,797 - BACOVA_02948 0.57 +0.5 20,797 - BACOVA_02948 0.57 -1.0 20,802 - BACOVA_02948 0.57 +0.0 20,808 - BACOVA_02948 0.57 -1.6 20,861 + BACOVA_02948 0.61 -0.1 20,884 - BACOVA_02948 0.63 -1.1 20,884 - BACOVA_02948 0.63 -0.3 20,886 + BACOVA_02948 0.63 +0.0
Or see this region's nucleotide sequence