Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02658

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02656 and BACOVA_02657 are separated by 7 nucleotidesBACOVA_02657 and BACOVA_02658 overlap by 156 nucleotidesBACOVA_02658 and BACOVA_02659 are separated by 211 nucleotides BACOVA_02656: BACOVA_02656 - glycosyl hydrolase, family 43, at 56,093 to 57,553 _02656 BACOVA_02657: BACOVA_02657 - hypothetical protein, at 57,561 to 57,782 _02657 BACOVA_02658: BACOVA_02658 - hypothetical protein, at 57,627 to 57,755 _02658 BACOVA_02659: BACOVA_02659 - glycosyl hydrolase family 3 N-terminal domain protein, at 57,967 to 60,327 _02659 Position (kb) 57 58Strain fitness (log2 ratio) -1 0 1 2at 56.641 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.733 kb on + strand, within BACOVA_02656at 56.734 kb on - strand, within BACOVA_02656at 56.767 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.801 kb on + strand, within BACOVA_02656at 56.850 kb on - strand, within BACOVA_02656at 56.910 kb on - strand, within BACOVA_02656at 56.960 kb on + strand, within BACOVA_02656at 57.052 kb on + strand, within BACOVA_02656at 57.053 kb on - strand, within BACOVA_02656at 57.054 kb on + strand, within BACOVA_02656at 57.054 kb on + strand, within BACOVA_02656at 57.055 kb on - strand, within BACOVA_02656at 57.055 kb on - strand, within BACOVA_02656at 57.055 kb on - strand, within BACOVA_02656at 57.057 kb on + strand, within BACOVA_02656at 57.058 kb on - strand, within BACOVA_02656at 57.069 kb on - strand, within BACOVA_02656at 57.190 kb on + strand, within BACOVA_02656at 57.242 kb on + strand, within BACOVA_02656at 57.243 kb on - strand, within BACOVA_02656at 57.246 kb on + strand, within BACOVA_02656at 57.247 kb on - strand, within BACOVA_02656at 57.306 kb on + strand, within BACOVA_02656at 57.309 kb on - strand, within BACOVA_02656at 57.311 kb on + strand, within BACOVA_02656at 57.312 kb on - strand, within BACOVA_02656at 57.354 kb on + strand, within BACOVA_02656at 57.391 kb on - strand, within BACOVA_02656at 57.485 kb on - strandat 57.487 kb on + strandat 57.530 kb on - strandat 57.530 kb on - strandat 57.530 kb on - strandat 57.530 kb on - strandat 57.654 kb on - strandat 57.657 kb on - strandat 57.702 kb on - strandat 57.722 kb on + strandat 57.746 kb on + strandat 57.810 kb on - strandat 57.816 kb on - strandat 57.816 kb on - strandat 57.816 kb on - strandat 57.840 kb on + strandat 57.840 kb on + strandat 57.850 kb on + strandat 57.863 kb on - strandat 57.880 kb on - strandat 57.923 kb on - strandat 57.939 kb on + strandat 57.940 kb on - strandat 57.959 kb on - strandat 57.990 kb on - strandat 57.990 kb on - strandat 57.992 kb on + strandat 57.992 kb on + strandat 57.992 kb on + strandat 57.993 kb on - strandat 57.993 kb on - strandat 57.995 kb on + strandat 58.068 kb on + strandat 58.175 kb on + strandat 58.228 kb on + strand, within BACOVA_02659at 58.228 kb on + strand, within BACOVA_02659at 58.230 kb on + strand, within BACOVA_02659at 58.231 kb on - strand, within BACOVA_02659at 58.235 kb on + strand, within BACOVA_02659at 58.236 kb on - strand, within BACOVA_02659at 58.378 kb on + strand, within BACOVA_02659at 58.395 kb on + strand, within BACOVA_02659at 58.471 kb on + strand, within BACOVA_02659at 58.472 kb on - strand, within BACOVA_02659at 58.472 kb on - strand, within BACOVA_02659at 58.524 kb on - strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.548 kb on + strand, within BACOVA_02659at 58.561 kb on + strand, within BACOVA_02659at 58.561 kb on + strand, within BACOVA_02659at 58.562 kb on - strand, within BACOVA_02659at 58.562 kb on - strand, within BACOVA_02659at 58.655 kb on + strand, within BACOVA_02659at 58.656 kb on - strand, within BACOVA_02659at 58.656 kb on - strand, within BACOVA_02659at 58.675 kb on + strand, within BACOVA_02659at 58.675 kb on + strand, within BACOVA_02659at 58.675 kb on + strand, within BACOVA_02659at 58.692 kb on - strand, within BACOVA_02659at 58.741 kb on - strand, within BACOVA_02659

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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56,641 + BACOVA_02656 0.38 +0.6
56,733 + BACOVA_02656 0.44 +1.3
56,733 + BACOVA_02656 0.44 +0.5
56,733 + BACOVA_02656 0.44 -0.0
56,734 - BACOVA_02656 0.44 +1.0
56,767 + BACOVA_02656 0.46 -0.4
56,801 + BACOVA_02656 0.48 -0.5
56,801 + BACOVA_02656 0.48 +0.2
56,801 + BACOVA_02656 0.48 +0.4
56,850 - BACOVA_02656 0.52 +0.3
56,910 - BACOVA_02656 0.56 +0.7
56,960 + BACOVA_02656 0.59 +0.2
57,052 + BACOVA_02656 0.66 -0.5
57,053 - BACOVA_02656 0.66 -1.5
57,054 + BACOVA_02656 0.66 +0.7
57,054 + BACOVA_02656 0.66 +0.1
57,055 - BACOVA_02656 0.66 +0.1
57,055 - BACOVA_02656 0.66 -0.7
57,055 - BACOVA_02656 0.66 -0.4
57,057 + BACOVA_02656 0.66 +0.7
57,058 - BACOVA_02656 0.66 +0.3
57,069 - BACOVA_02656 0.67 +1.5
57,190 + BACOVA_02656 0.75 +0.8
57,242 + BACOVA_02656 0.79 +0.1
57,243 - BACOVA_02656 0.79 +0.2
57,246 + BACOVA_02656 0.79 -1.1
57,247 - BACOVA_02656 0.79 +1.0
57,306 + BACOVA_02656 0.83 -0.1
57,309 - BACOVA_02656 0.83 +1.1
57,311 + BACOVA_02656 0.83 +0.1
57,312 - BACOVA_02656 0.83 +0.0
57,354 + BACOVA_02656 0.86 +2.4
57,391 - BACOVA_02656 0.89 +0.1
57,485 - -0.7
57,487 + -0.7
57,530 - +1.1
57,530 - +0.6
57,530 - -0.4
57,530 - +1.1
57,654 - -0.2
57,657 - +1.5
57,702 - +0.1
57,722 + -0.6
57,746 + -0.1
57,810 - -0.2
57,816 - +0.1
57,816 - -1.3
57,816 - +0.9
57,840 + +0.6
57,840 + -1.2
57,850 + +0.1
57,863 - -0.3
57,880 - +0.3
57,923 - +1.1
57,939 + +0.5
57,940 - -0.2
57,959 - -0.1
57,990 - +0.5
57,990 - -0.3
57,992 + +0.8
57,992 + -0.3
57,992 + +0.2
57,993 - -0.5
57,993 - +0.3
57,995 + -0.8
58,068 + -0.1
58,175 + +0.1
58,228 + BACOVA_02659 0.11 +1.1
58,228 + BACOVA_02659 0.11 -0.6
58,230 + BACOVA_02659 0.11 +0.3
58,231 - BACOVA_02659 0.11 -0.2
58,235 + BACOVA_02659 0.11 +0.3
58,236 - BACOVA_02659 0.11 -0.7
58,378 + BACOVA_02659 0.17 +1.1
58,395 + BACOVA_02659 0.18 +0.8
58,471 + BACOVA_02659 0.21 +1.1
58,472 - BACOVA_02659 0.21 +0.2
58,472 - BACOVA_02659 0.21 -0.1
58,524 - BACOVA_02659 0.24 -0.5
58,548 + BACOVA_02659 0.25 +1.9
58,548 + BACOVA_02659 0.25 -0.0
58,548 + BACOVA_02659 0.25 -0.6
58,548 + BACOVA_02659 0.25 -0.3
58,561 + BACOVA_02659 0.25 +0.7
58,561 + BACOVA_02659 0.25 +0.7
58,562 - BACOVA_02659 0.25 +0.8
58,562 - BACOVA_02659 0.25 -0.1
58,655 + BACOVA_02659 0.29 -0.1
58,656 - BACOVA_02659 0.29 +0.7
58,656 - BACOVA_02659 0.29 +0.6
58,675 + BACOVA_02659 0.30 -0.3
58,675 + BACOVA_02659 0.30 +0.5
58,675 + BACOVA_02659 0.30 +0.1
58,692 - BACOVA_02659 0.31 +0.2
58,741 - BACOVA_02659 0.33 -0.6

Or see this region's nucleotide sequence