Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02593

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02592 and BACOVA_02593 are separated by 67 nucleotidesBACOVA_02593 and BACOVA_02594 are separated by 83 nucleotidesBACOVA_02594 and BACOVA_02595 are separated by 180 nucleotides BACOVA_02592: BACOVA_02592 - hydrolase, carbon-nitrogen family, at 362,596 to 363,480 _02592 BACOVA_02593: BACOVA_02593 - hypothetical protein, at 363,548 to 364,669 _02593 BACOVA_02594: BACOVA_02594 - hypothetical protein, at 364,753 to 365,295 _02594 BACOVA_02595: BACOVA_02595 - hypothetical protein, at 365,476 to 367,032 _02595 Position (kb) 363 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 362.561 kb on + strandat 362.617 kb on - strandat 362.617 kb on - strandat 362.627 kb on + strandat 362.628 kb on - strandat 362.695 kb on + strand, within BACOVA_02592at 362.828 kb on - strand, within BACOVA_02592at 362.963 kb on - strand, within BACOVA_02592at 362.981 kb on - strand, within BACOVA_02592at 363.025 kb on + strand, within BACOVA_02592at 363.025 kb on + strand, within BACOVA_02592at 363.026 kb on - strand, within BACOVA_02592at 363.028 kb on + strand, within BACOVA_02592at 363.028 kb on + strand, within BACOVA_02592at 363.029 kb on - strand, within BACOVA_02592at 363.029 kb on - strand, within BACOVA_02592at 363.032 kb on - strand, within BACOVA_02592at 363.092 kb on + strand, within BACOVA_02592at 363.092 kb on + strand, within BACOVA_02592at 363.092 kb on + strand, within BACOVA_02592at 363.104 kb on + strand, within BACOVA_02592at 363.235 kb on + strand, within BACOVA_02592at 363.241 kb on - strand, within BACOVA_02592at 363.244 kb on - strand, within BACOVA_02592at 363.264 kb on - strand, within BACOVA_02592at 363.335 kb on + strand, within BACOVA_02592at 363.399 kb on + strandat 363.430 kb on + strandat 363.488 kb on - strandat 363.492 kb on - strandat 363.562 kb on + strandat 363.613 kb on + strandat 363.671 kb on + strand, within BACOVA_02593at 363.672 kb on - strand, within BACOVA_02593at 363.706 kb on - strand, within BACOVA_02593at 363.708 kb on + strand, within BACOVA_02593at 363.882 kb on + strand, within BACOVA_02593at 363.970 kb on + strand, within BACOVA_02593at 363.970 kb on + strand, within BACOVA_02593at 363.999 kb on - strand, within BACOVA_02593at 364.038 kb on + strand, within BACOVA_02593at 364.114 kb on + strand, within BACOVA_02593at 364.114 kb on + strand, within BACOVA_02593at 364.151 kb on + strand, within BACOVA_02593at 364.169 kb on + strand, within BACOVA_02593at 364.169 kb on + strand, within BACOVA_02593at 364.169 kb on + strand, within BACOVA_02593at 364.170 kb on - strand, within BACOVA_02593at 364.170 kb on - strand, within BACOVA_02593at 364.171 kb on + strand, within BACOVA_02593at 364.200 kb on - strand, within BACOVA_02593at 364.292 kb on - strand, within BACOVA_02593at 364.304 kb on + strand, within BACOVA_02593at 364.305 kb on - strand, within BACOVA_02593at 364.427 kb on + strand, within BACOVA_02593at 364.428 kb on - strand, within BACOVA_02593at 364.459 kb on + strand, within BACOVA_02593at 364.460 kb on - strand, within BACOVA_02593at 364.465 kb on + strand, within BACOVA_02593at 364.532 kb on + strand, within BACOVA_02593at 364.533 kb on - strand, within BACOVA_02593at 364.534 kb on + strand, within BACOVA_02593at 364.535 kb on - strand, within BACOVA_02593at 364.583 kb on + strandat 364.675 kb on + strandat 364.678 kb on - strandat 364.679 kb on + strandat 364.682 kb on - strandat 364.682 kb on - strandat 364.686 kb on - strandat 364.694 kb on - strandat 364.948 kb on + strand, within BACOVA_02594at 364.948 kb on + strand, within BACOVA_02594at 365.077 kb on + strand, within BACOVA_02594at 365.125 kb on + strand, within BACOVA_02594at 365.130 kb on + strand, within BACOVA_02594at 365.131 kb on - strand, within BACOVA_02594at 365.134 kb on + strand, within BACOVA_02594at 365.134 kb on + strand, within BACOVA_02594at 365.134 kb on + strand, within BACOVA_02594at 365.135 kb on - strand, within BACOVA_02594at 365.140 kb on - strand, within BACOVA_02594at 365.154 kb on - strand, within BACOVA_02594at 365.157 kb on + strand, within BACOVA_02594at 365.190 kb on + strand, within BACOVA_02594at 365.257 kb on + strandat 365.258 kb on - strandat 365.309 kb on + strandat 365.317 kb on - strandat 365.364 kb on + strandat 365.364 kb on + strandat 365.368 kb on + strandat 365.369 kb on - strandat 365.473 kb on + strandat 365.475 kb on + strandat 365.475 kb on + strandat 365.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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362,561 + +1.5
362,617 - -2.8
362,617 - +1.5
362,627 + -2.5
362,628 - -1.8
362,695 + BACOVA_02592 0.11 -2.0
362,828 - BACOVA_02592 0.26 -3.2
362,963 - BACOVA_02592 0.41 -0.2
362,981 - BACOVA_02592 0.44 -3.1
363,025 + BACOVA_02592 0.48 -1.3
363,025 + BACOVA_02592 0.48 -1.4
363,026 - BACOVA_02592 0.49 -2.2
363,028 + BACOVA_02592 0.49 -1.8
363,028 + BACOVA_02592 0.49 -1.4
363,029 - BACOVA_02592 0.49 +0.2
363,029 - BACOVA_02592 0.49 -2.9
363,032 - BACOVA_02592 0.49 -1.2
363,092 + BACOVA_02592 0.56 -1.5
363,092 + BACOVA_02592 0.56 -2.1
363,092 + BACOVA_02592 0.56 -1.8
363,104 + BACOVA_02592 0.57 -1.2
363,235 + BACOVA_02592 0.72 -2.2
363,241 - BACOVA_02592 0.73 -2.0
363,244 - BACOVA_02592 0.73 -3.7
363,264 - BACOVA_02592 0.75 -2.4
363,335 + BACOVA_02592 0.84 -2.7
363,399 + -2.7
363,430 + -1.8
363,488 - +1.2
363,492 - -0.5
363,562 + -2.2
363,613 + -0.2
363,671 + BACOVA_02593 0.11 -1.2
363,672 - BACOVA_02593 0.11 -1.2
363,706 - BACOVA_02593 0.14 -1.2
363,708 + BACOVA_02593 0.14 -3.7
363,882 + BACOVA_02593 0.30 -1.5
363,970 + BACOVA_02593 0.38 +0.8
363,970 + BACOVA_02593 0.38 -0.8
363,999 - BACOVA_02593 0.40 -1.0
364,038 + BACOVA_02593 0.44 +0.4
364,114 + BACOVA_02593 0.50 -2.0
364,114 + BACOVA_02593 0.50 -1.3
364,151 + BACOVA_02593 0.54 -1.8
364,169 + BACOVA_02593 0.55 +1.5
364,169 + BACOVA_02593 0.55 -2.0
364,169 + BACOVA_02593 0.55 -1.5
364,170 - BACOVA_02593 0.55 -1.5
364,170 - BACOVA_02593 0.55 -0.2
364,171 + BACOVA_02593 0.56 +0.8
364,200 - BACOVA_02593 0.58 -0.2
364,292 - BACOVA_02593 0.66 -2.2
364,304 + BACOVA_02593 0.67 -0.5
364,305 - BACOVA_02593 0.67 -0.2
364,427 + BACOVA_02593 0.78 -2.7
364,428 - BACOVA_02593 0.78 -2.0
364,459 + BACOVA_02593 0.81 -0.2
364,460 - BACOVA_02593 0.81 -0.8
364,465 + BACOVA_02593 0.82 +0.8
364,532 + BACOVA_02593 0.88 -0.8
364,533 - BACOVA_02593 0.88 -0.2
364,534 + BACOVA_02593 0.88 -1.2
364,535 - BACOVA_02593 0.88 -0.8
364,583 + +0.0
364,675 + +0.0
364,678 - -0.5
364,679 + -1.2
364,682 - +0.1
364,682 - -0.6
364,686 - +1.4
364,694 - +0.1
364,948 + BACOVA_02594 0.36 -1.0
364,948 + BACOVA_02594 0.36 -0.8
365,077 + BACOVA_02594 0.60 -0.0
365,125 + BACOVA_02594 0.69 -1.2
365,130 + BACOVA_02594 0.69 -2.2
365,131 - BACOVA_02594 0.70 +1.2
365,134 + BACOVA_02594 0.70 -0.8
365,134 + BACOVA_02594 0.70 -1.5
365,134 + BACOVA_02594 0.70 -0.8
365,135 - BACOVA_02594 0.70 +0.6
365,140 - BACOVA_02594 0.71 -1.2
365,154 - BACOVA_02594 0.74 +1.8
365,157 + BACOVA_02594 0.74 -2.0
365,190 + BACOVA_02594 0.80 -0.8
365,257 + +0.0
365,258 - +0.6
365,309 + -0.2
365,317 - +0.4
365,364 + -1.0
365,364 + -0.6
365,368 + +0.4
365,369 - -0.2
365,473 + -1.8
365,475 + -2.9
365,475 + -2.9
365,566 + -1.0

Or see this region's nucleotide sequence