Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02290 and BACOVA_02291 are separated by 16 nucleotides BACOVA_02291 and BACOVA_02292 overlap by 4 nucleotides BACOVA_02292 and BACOVA_02293 are separated by 471 nucleotides
BACOVA_02290: BACOVA_02290 - hypothetical protein, at 60,347 to 61,903
_02290
BACOVA_02291: BACOVA_02291 - hypothetical protein, at 61,920 to 62,789
_02291
BACOVA_02292: BACOVA_02292 - hypothetical protein, at 62,786 to 63,763
_02292
BACOVA_02293: BACOVA_02293 - hypothetical protein, at 64,235 to 64,834
_02293
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.805 kb on - strand at 61.823 kb on - strand at 61.968 kb on - strand at 61.968 kb on - strand at 61.973 kb on - strand at 62.013 kb on + strand, within BACOVA_02291 at 62.014 kb on - strand, within BACOVA_02291 at 62.014 kb on - strand, within BACOVA_02291 at 62.039 kb on + strand, within BACOVA_02291 at 62.039 kb on + strand, within BACOVA_02291 at 62.039 kb on + strand, within BACOVA_02291 at 62.039 kb on + strand, within BACOVA_02291 at 62.053 kb on + strand, within BACOVA_02291 at 62.071 kb on - strand, within BACOVA_02291 at 62.096 kb on + strand, within BACOVA_02291 at 62.097 kb on - strand, within BACOVA_02291 at 62.097 kb on - strand, within BACOVA_02291 at 62.099 kb on - strand, within BACOVA_02291 at 62.099 kb on - strand, within BACOVA_02291 at 62.099 kb on - strand, within BACOVA_02291 at 62.100 kb on + strand, within BACOVA_02291 at 62.100 kb on + strand, within BACOVA_02291 at 62.101 kb on - strand, within BACOVA_02291 at 62.101 kb on - strand, within BACOVA_02291 at 62.117 kb on + strand, within BACOVA_02291 at 62.117 kb on + strand, within BACOVA_02291 at 62.118 kb on - strand, within BACOVA_02291 at 62.121 kb on + strand, within BACOVA_02291 at 62.122 kb on - strand, within BACOVA_02291 at 62.190 kb on + strand, within BACOVA_02291 at 62.193 kb on + strand, within BACOVA_02291 at 62.209 kb on + strand, within BACOVA_02291 at 62.232 kb on + strand, within BACOVA_02291 at 62.258 kb on + strand, within BACOVA_02291 at 62.259 kb on - strand, within BACOVA_02291 at 62.263 kb on - strand, within BACOVA_02291 at 62.295 kb on - strand, within BACOVA_02291 at 62.336 kb on + strand, within BACOVA_02291 at 62.351 kb on - strand, within BACOVA_02291 at 62.355 kb on + strand, within BACOVA_02291 at 62.356 kb on - strand, within BACOVA_02291 at 62.356 kb on - strand, within BACOVA_02291 at 62.378 kb on + strand, within BACOVA_02291 at 62.383 kb on + strand, within BACOVA_02291 at 62.384 kb on - strand, within BACOVA_02291 at 62.512 kb on - strand, within BACOVA_02291 at 62.525 kb on + strand, within BACOVA_02291 at 62.541 kb on - strand, within BACOVA_02291 at 62.550 kb on - strand, within BACOVA_02291 at 62.551 kb on + strand, within BACOVA_02291 at 62.551 kb on + strand, within BACOVA_02291 at 62.552 kb on - strand, within BACOVA_02291 at 62.552 kb on - strand, within BACOVA_02291 at 62.552 kb on - strand, within BACOVA_02291 at 62.552 kb on - strand, within BACOVA_02291 at 62.552 kb on - strand, within BACOVA_02291 at 62.552 kb on - strand, within BACOVA_02291 at 62.562 kb on - strand, within BACOVA_02291 at 62.562 kb on - strand, within BACOVA_02291 at 62.590 kb on - strand, within BACOVA_02291 at 62.650 kb on - strand, within BACOVA_02291 at 62.723 kb on + strand at 62.729 kb on + strand at 62.729 kb on + strand at 62.735 kb on + strand at 62.736 kb on - strand at 62.745 kb on - strand at 62.765 kb on + strand at 62.765 kb on + strand at 62.765 kb on + strand at 62.766 kb on - strand at 62.766 kb on - strand at 62.766 kb on - strand at 62.823 kb on + strand at 62.823 kb on + strand at 62.849 kb on - strand at 62.852 kb on - strand at 62.864 kb on + strand at 62.865 kb on - strand at 62.899 kb on + strand, within BACOVA_02292 at 62.902 kb on - strand, within BACOVA_02292 at 62.953 kb on - strand, within BACOVA_02292 at 62.993 kb on + strand, within BACOVA_02292 at 63.000 kb on - strand, within BACOVA_02292 at 63.000 kb on - strand, within BACOVA_02292 at 63.039 kb on - strand, within BACOVA_02292 at 63.039 kb on - strand, within BACOVA_02292 at 63.109 kb on - strand, within BACOVA_02292 at 63.116 kb on + strand, within BACOVA_02292 at 63.116 kb on + strand, within BACOVA_02292 at 63.201 kb on + strand, within BACOVA_02292 at 63.201 kb on + strand, within BACOVA_02292 at 63.201 kb on + strand, within BACOVA_02292 at 63.202 kb on - strand, within BACOVA_02292 at 63.202 kb on - strand, within BACOVA_02292 at 63.202 kb on - strand, within BACOVA_02292 at 63.207 kb on + strand, within BACOVA_02292 at 63.207 kb on + strand, within BACOVA_02292 at 63.207 kb on + strand, within BACOVA_02292 at 63.316 kb on + strand, within BACOVA_02292 at 63.322 kb on - strand, within BACOVA_02292 at 63.324 kb on - strand, within BACOVA_02292 at 63.324 kb on - strand, within BACOVA_02292 at 63.388 kb on + strand, within BACOVA_02292 at 63.443 kb on + strand, within BACOVA_02292 at 63.443 kb on + strand, within BACOVA_02292 at 63.486 kb on + strand, within BACOVA_02292 at 63.486 kb on + strand, within BACOVA_02292 at 63.517 kb on - strand, within BACOVA_02292 at 63.573 kb on - strand, within BACOVA_02292 at 63.574 kb on + strand, within BACOVA_02292 at 63.575 kb on - strand, within BACOVA_02292 at 63.575 kb on - strand, within BACOVA_02292 at 63.597 kb on + strand, within BACOVA_02292 at 63.597 kb on + strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.666 kb on - strand at 63.682 kb on - strand at 63.702 kb on + strand at 63.707 kb on - strand at 63.707 kb on - strand at 63.707 kb on - strand at 63.718 kb on + strand at 63.743 kb on - strand at 63.748 kb on - strand at 63.748 kb on - strand at 63.748 kb on - strand at 63.748 kb on - strand at 63.812 kb on - strand at 63.879 kb on + strand at 63.894 kb on - strand at 63.937 kb on + strand at 63.938 kb on - strand at 63.938 kb on - strand at 63.941 kb on + strand at 63.965 kb on + strand at 63.980 kb on + strand at 63.980 kb on + strand at 64.022 kb on - strand at 64.143 kb on - strand at 64.159 kb on - strand at 64.231 kb on + strand at 64.235 kb on - strand at 64.235 kb on - strand at 64.266 kb on + strand at 64.266 kb on + strand at 64.288 kb on + strand at 64.309 kb on + strand, within BACOVA_02293 at 64.321 kb on - strand, within BACOVA_02293 at 64.355 kb on - strand, within BACOVA_02293 at 64.378 kb on - strand, within BACOVA_02293 at 64.378 kb on - strand, within BACOVA_02293 at 64.381 kb on + strand, within BACOVA_02293 at 64.382 kb on - strand, within BACOVA_02293 at 64.383 kb on + strand, within BACOVA_02293 at 64.450 kb on + strand, within BACOVA_02293 at 64.490 kb on + strand, within BACOVA_02293 at 64.490 kb on + strand, within BACOVA_02293 at 64.491 kb on - strand, within BACOVA_02293 at 64.528 kb on + strand, within BACOVA_02293 at 64.528 kb on + strand, within BACOVA_02293 at 64.529 kb on - strand, within BACOVA_02293 at 64.608 kb on - strand, within BACOVA_02293 at 64.612 kb on + strand, within BACOVA_02293 at 64.648 kb on + strand, within BACOVA_02293 at 64.648 kb on + strand, within BACOVA_02293 at 64.651 kb on + strand, within BACOVA_02293 at 64.651 kb on + strand, within BACOVA_02293 at 64.734 kb on + strand, within BACOVA_02293
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C) remove 61,805 - +0.3 61,823 - -1.0 61,968 - +0.2 61,968 - +0.3 61,973 - -0.4 62,013 + BACOVA_02291 0.11 -0.9 62,014 - BACOVA_02291 0.11 -0.2 62,014 - BACOVA_02291 0.11 +0.9 62,039 + BACOVA_02291 0.14 +0.1 62,039 + BACOVA_02291 0.14 +0.1 62,039 + BACOVA_02291 0.14 -1.2 62,039 + BACOVA_02291 0.14 -1.4 62,053 + BACOVA_02291 0.15 -0.5 62,071 - BACOVA_02291 0.17 +1.6 62,096 + BACOVA_02291 0.20 +0.5 62,097 - BACOVA_02291 0.20 -1.5 62,097 - BACOVA_02291 0.20 -0.3 62,099 - BACOVA_02291 0.21 +0.3 62,099 - BACOVA_02291 0.21 +0.5 62,099 - BACOVA_02291 0.21 -1.0 62,100 + BACOVA_02291 0.21 +0.1 62,100 + BACOVA_02291 0.21 -1.5 62,101 - BACOVA_02291 0.21 +0.1 62,101 - BACOVA_02291 0.21 -0.2 62,117 + BACOVA_02291 0.23 -2.1 62,117 + BACOVA_02291 0.23 +0.4 62,118 - BACOVA_02291 0.23 +0.6 62,121 + BACOVA_02291 0.23 +1.6 62,122 - BACOVA_02291 0.23 -0.2 62,190 + BACOVA_02291 0.31 -0.6 62,193 + BACOVA_02291 0.31 -0.1 62,209 + BACOVA_02291 0.33 +0.8 62,232 + BACOVA_02291 0.36 -0.8 62,258 + BACOVA_02291 0.39 +0.3 62,259 - BACOVA_02291 0.39 +0.3 62,263 - BACOVA_02291 0.39 +1.1 62,295 - BACOVA_02291 0.43 -0.4 62,336 + BACOVA_02291 0.48 +0.1 62,351 - BACOVA_02291 0.50 +0.0 62,355 + BACOVA_02291 0.50 +0.8 62,356 - BACOVA_02291 0.50 +0.8 62,356 - BACOVA_02291 0.50 -1.5 62,378 + BACOVA_02291 0.53 -0.9 62,383 + BACOVA_02291 0.53 +0.9 62,384 - BACOVA_02291 0.53 -1.3 62,512 - BACOVA_02291 0.68 -0.2 62,525 + BACOVA_02291 0.70 +0.6 62,541 - BACOVA_02291 0.71 -0.1 62,550 - BACOVA_02291 0.72 -1.3 62,551 + BACOVA_02291 0.73 -1.5 62,551 + BACOVA_02291 0.73 -0.2 62,552 - BACOVA_02291 0.73 +0.5 62,552 - BACOVA_02291 0.73 +0.8 62,552 - BACOVA_02291 0.73 +0.1 62,552 - BACOVA_02291 0.73 -0.2 62,552 - BACOVA_02291 0.73 +0.0 62,552 - BACOVA_02291 0.73 +0.0 62,562 - BACOVA_02291 0.74 +1.6 62,562 - BACOVA_02291 0.74 +0.9 62,590 - BACOVA_02291 0.77 +3.6 62,650 - BACOVA_02291 0.84 +1.1 62,723 + +0.7 62,729 + -0.4 62,729 + -0.4 62,735 + +0.8 62,736 - -2.3 62,745 - -0.2 62,765 + -1.5 62,765 + -1.2 62,765 + +0.0 62,766 - -1.2 62,766 - +1.1 62,766 - +0.5 62,823 + +0.8 62,823 + -0.4 62,849 - -1.5 62,852 - -0.8 62,864 + +0.8 62,865 - +0.1 62,899 + BACOVA_02292 0.12 +0.4 62,902 - BACOVA_02292 0.12 -2.5 62,953 - BACOVA_02292 0.17 -0.2 62,993 + BACOVA_02292 0.21 +0.2 63,000 - BACOVA_02292 0.22 -0.0 63,000 - BACOVA_02292 0.22 -0.2 63,039 - BACOVA_02292 0.26 +0.3 63,039 - BACOVA_02292 0.26 -0.7 63,109 - BACOVA_02292 0.33 -1.0 63,116 + BACOVA_02292 0.34 -0.5 63,116 + BACOVA_02292 0.34 -0.8 63,201 + BACOVA_02292 0.42 -0.6 63,201 + BACOVA_02292 0.42 -0.0 63,201 + BACOVA_02292 0.42 +0.6 63,202 - BACOVA_02292 0.43 +0.1 63,202 - BACOVA_02292 0.43 -0.9 63,202 - BACOVA_02292 0.43 +1.1 63,207 + BACOVA_02292 0.43 -0.2 63,207 + BACOVA_02292 0.43 -1.6 63,207 + BACOVA_02292 0.43 +0.6 63,316 + BACOVA_02292 0.54 -1.0 63,322 - BACOVA_02292 0.55 +1.8 63,324 - BACOVA_02292 0.55 +0.6 63,324 - BACOVA_02292 0.55 -0.3 63,388 + BACOVA_02292 0.62 -0.5 63,443 + BACOVA_02292 0.67 -0.2 63,443 + BACOVA_02292 0.67 -3.2 63,486 + BACOVA_02292 0.72 +0.6 63,486 + BACOVA_02292 0.72 -2.9 63,517 - BACOVA_02292 0.75 -1.6 63,573 - BACOVA_02292 0.80 +0.5 63,574 + BACOVA_02292 0.81 +0.7 63,575 - BACOVA_02292 0.81 -0.1 63,575 - BACOVA_02292 0.81 -1.2 63,597 + BACOVA_02292 0.83 +1.2 63,597 + BACOVA_02292 0.83 +0.2 63,598 - BACOVA_02292 0.83 +0.3 63,598 - BACOVA_02292 0.83 -0.9 63,598 - BACOVA_02292 0.83 -1.4 63,598 - BACOVA_02292 0.83 -0.4 63,598 - BACOVA_02292 0.83 -0.4 63,598 - BACOVA_02292 0.83 +1.0 63,666 - +0.8 63,682 - +1.5 63,702 + -1.1 63,707 - -0.3 63,707 - -1.2 63,707 - +0.4 63,718 + -0.1 63,743 - -0.6 63,748 - +0.9 63,748 - +0.4 63,748 - +2.0 63,748 - +0.8 63,812 - -0.2 63,879 + +0.1 63,894 - +0.2 63,937 + +1.3 63,938 - +0.3 63,938 - -0.2 63,941 + -1.3 63,965 + +0.8 63,980 + +0.3 63,980 + -0.5 64,022 - +0.2 64,143 - +1.3 64,159 - -0.5 64,231 + -0.8 64,235 - -1.5 64,235 - +0.4 64,266 + +0.5 64,266 + +0.3 64,288 + -1.1 64,309 + BACOVA_02293 0.12 +0.6 64,321 - BACOVA_02293 0.14 -1.1 64,355 - BACOVA_02293 0.20 -0.3 64,378 - BACOVA_02293 0.24 -1.2 64,378 - BACOVA_02293 0.24 +1.2 64,381 + BACOVA_02293 0.24 +0.1 64,382 - BACOVA_02293 0.24 -1.1 64,383 + BACOVA_02293 0.25 -2.0 64,450 + BACOVA_02293 0.36 -1.8 64,490 + BACOVA_02293 0.42 +0.7 64,490 + BACOVA_02293 0.42 -0.8 64,491 - BACOVA_02293 0.43 +0.7 64,528 + BACOVA_02293 0.49 -0.4 64,528 + BACOVA_02293 0.49 +0.2 64,529 - BACOVA_02293 0.49 +0.2 64,608 - BACOVA_02293 0.62 -0.5 64,612 + BACOVA_02293 0.63 -1.3 64,648 + BACOVA_02293 0.69 -1.5 64,648 + BACOVA_02293 0.69 +0.3 64,651 + BACOVA_02293 0.69 +0.2 64,651 + BACOVA_02293 0.69 +0.8 64,734 + BACOVA_02293 0.83 -1.3
Or see this region's nucleotide sequence