Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02079

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02077 and BACOVA_02078 are separated by 83 nucleotidesBACOVA_02078 and BACOVA_02079 are separated by 218 nucleotidesBACOVA_02079 and BACOVA_02080 overlap by 20 nucleotidesBACOVA_02080 and BACOVA_02081 are separated by 4 nucleotides BACOVA_02077: BACOVA_02077 - arginine--tRNA ligase, at 403,022 to 404,839 _02077 BACOVA_02078: BACOVA_02078 - DNA-binding protein HU, at 404,923 to 405,195 _02078 BACOVA_02079: BACOVA_02079 - peptidase, S54 family, at 405,414 to 406,091 _02079 BACOVA_02080: BACOVA_02080 - peptidase, S54 family, at 406,072 to 406,977 _02080 BACOVA_02081: BACOVA_02081 - endonuclease/exonuclease/phosphatase family protein, at 406,982 to 408,067 _02081 Position (kb) 405 406 407Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 404.849 kb on - strandat 404.915 kb on + strandat 404.919 kb on + strandat 404.920 kb on - strandat 404.920 kb on - strandat 404.920 kb on - strandat 404.920 kb on - strandat 404.920 kb on - strandat 404.924 kb on + strandat 404.924 kb on + strandat 404.925 kb on - strandat 404.925 kb on - strandat 404.942 kb on - strandat 404.964 kb on + strand, within BACOVA_02078at 404.969 kb on - strand, within BACOVA_02078at 404.977 kb on - strand, within BACOVA_02078at 404.985 kb on + strand, within BACOVA_02078at 404.988 kb on + strand, within BACOVA_02078at 404.992 kb on - strand, within BACOVA_02078at 404.992 kb on - strand, within BACOVA_02078at 404.992 kb on - strand, within BACOVA_02078at 405.015 kb on + strand, within BACOVA_02078at 405.071 kb on - strand, within BACOVA_02078at 405.096 kb on + strand, within BACOVA_02078at 405.096 kb on + strand, within BACOVA_02078at 405.189 kb on + strandat 405.190 kb on - strandat 405.190 kb on - strandat 405.198 kb on + strandat 405.199 kb on - strandat 405.216 kb on - strandat 405.219 kb on - strandat 405.220 kb on + strandat 405.223 kb on - strandat 405.223 kb on - strandat 405.223 kb on - strandat 405.286 kb on + strandat 405.287 kb on - strandat 405.334 kb on + strandat 405.334 kb on + strandat 405.391 kb on + strandat 405.409 kb on + strandat 405.431 kb on + strandat 405.454 kb on + strandat 405.457 kb on + strandat 405.567 kb on + strand, within BACOVA_02079at 405.567 kb on + strand, within BACOVA_02079at 405.569 kb on + strand, within BACOVA_02079at 405.569 kb on + strand, within BACOVA_02079at 405.608 kb on + strand, within BACOVA_02079at 405.608 kb on + strand, within BACOVA_02079at 405.680 kb on + strand, within BACOVA_02079at 405.707 kb on + strand, within BACOVA_02079at 405.726 kb on + strand, within BACOVA_02079at 405.728 kb on + strand, within BACOVA_02079at 405.776 kb on + strand, within BACOVA_02079at 405.801 kb on + strand, within BACOVA_02079at 405.866 kb on + strand, within BACOVA_02079at 405.866 kb on + strand, within BACOVA_02079at 405.942 kb on + strand, within BACOVA_02079at 405.958 kb on + strand, within BACOVA_02079at 405.958 kb on + strand, within BACOVA_02079at 406.047 kb on + strandat 406.080 kb on + strandat 406.080 kb on + strandat 406.140 kb on + strandat 406.203 kb on - strand, within BACOVA_02080at 406.218 kb on - strand, within BACOVA_02080at 406.218 kb on - strand, within BACOVA_02080at 406.226 kb on + strand, within BACOVA_02080at 406.257 kb on + strand, within BACOVA_02080at 406.258 kb on - strand, within BACOVA_02080at 406.278 kb on - strand, within BACOVA_02080at 406.339 kb on + strand, within BACOVA_02080at 406.340 kb on - strand, within BACOVA_02080at 406.394 kb on + strand, within BACOVA_02080at 406.395 kb on - strand, within BACOVA_02080at 406.396 kb on + strand, within BACOVA_02080at 406.396 kb on + strand, within BACOVA_02080at 406.397 kb on - strand, within BACOVA_02080at 406.397 kb on - strand, within BACOVA_02080at 406.400 kb on + strand, within BACOVA_02080at 406.400 kb on + strand, within BACOVA_02080at 406.400 kb on + strand, within BACOVA_02080at 406.429 kb on + strand, within BACOVA_02080at 406.626 kb on - strand, within BACOVA_02080at 406.657 kb on - strand, within BACOVA_02080at 406.706 kb on + strand, within BACOVA_02080at 406.710 kb on + strand, within BACOVA_02080at 406.809 kb on - strand, within BACOVA_02080at 406.990 kb on + strandat 407.010 kb on - strandat 407.016 kb on + strandat 407.017 kb on - strandat 407.017 kb on - strandat 407.052 kb on + strandat 407.055 kb on + strandat 407.055 kb on + strandat 407.056 kb on - strandat 407.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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404,849 - +0.1
404,915 + -2.3
404,919 + -0.4
404,920 - -0.9
404,920 - -0.3
404,920 - -1.1
404,920 - -0.5
404,920 - -1.6
404,924 + -0.5
404,924 + -0.6
404,925 - -1.6
404,925 - -0.4
404,942 - -1.0
404,964 + BACOVA_02078 0.15 -1.5
404,969 - BACOVA_02078 0.17 -1.6
404,977 - BACOVA_02078 0.20 -0.9
404,985 + BACOVA_02078 0.23 +0.4
404,988 + BACOVA_02078 0.24 -0.9
404,992 - BACOVA_02078 0.25 -0.5
404,992 - BACOVA_02078 0.25 -2.9
404,992 - BACOVA_02078 0.25 -0.6
405,015 + BACOVA_02078 0.34 -1.5
405,071 - BACOVA_02078 0.54 -0.8
405,096 + BACOVA_02078 0.63 -0.6
405,096 + BACOVA_02078 0.63 -1.9
405,189 + -0.6
405,190 - -2.0
405,190 - -0.5
405,198 + -3.4
405,199 - -1.6
405,216 - -1.2
405,219 - -1.5
405,220 + -1.4
405,223 - +1.1
405,223 - -0.9
405,223 - -1.8
405,286 + -1.8
405,287 - -0.9
405,334 + -0.8
405,334 + -0.9
405,391 + +0.1
405,409 + -0.0
405,431 + -2.3
405,454 + -1.5
405,457 + -0.9
405,567 + BACOVA_02079 0.23 +0.8
405,567 + BACOVA_02079 0.23 +1.1
405,569 + BACOVA_02079 0.23 +2.3
405,569 + BACOVA_02079 0.23 +1.5
405,608 + BACOVA_02079 0.29 +0.5
405,608 + BACOVA_02079 0.29 +0.5
405,680 + BACOVA_02079 0.39 +0.1
405,707 + BACOVA_02079 0.43 -0.8
405,726 + BACOVA_02079 0.46 +2.5
405,728 + BACOVA_02079 0.46 +1.5
405,776 + BACOVA_02079 0.53 -0.9
405,801 + BACOVA_02079 0.57 -0.9
405,866 + BACOVA_02079 0.67 -3.0
405,866 + BACOVA_02079 0.67 +0.1
405,942 + BACOVA_02079 0.78 +0.6
405,958 + BACOVA_02079 0.80 -0.4
405,958 + BACOVA_02079 0.80 +1.6
406,047 + +0.7
406,080 + -1.7
406,080 + -0.9
406,140 + +0.1
406,203 - BACOVA_02080 0.14 +1.1
406,218 - BACOVA_02080 0.16 -1.1
406,218 - BACOVA_02080 0.16 -1.5
406,226 + BACOVA_02080 0.17 -0.5
406,257 + BACOVA_02080 0.20 -0.3
406,258 - BACOVA_02080 0.21 +1.1
406,278 - BACOVA_02080 0.23 -0.9
406,339 + BACOVA_02080 0.29 -0.3
406,340 - BACOVA_02080 0.30 -0.3
406,394 + BACOVA_02080 0.36 -0.5
406,395 - BACOVA_02080 0.36 +0.5
406,396 + BACOVA_02080 0.36 -2.9
406,396 + BACOVA_02080 0.36 -1.3
406,397 - BACOVA_02080 0.36 +0.1
406,397 - BACOVA_02080 0.36 +1.1
406,400 + BACOVA_02080 0.36 +2.1
406,400 + BACOVA_02080 0.36 +0.5
406,400 + BACOVA_02080 0.36 +0.1
406,429 + BACOVA_02080 0.39 -0.5
406,626 - BACOVA_02080 0.61 -1.6
406,657 - BACOVA_02080 0.65 +0.3
406,706 + BACOVA_02080 0.70 +2.4
406,710 + BACOVA_02080 0.70 +0.1
406,809 - BACOVA_02080 0.81 -0.7
406,990 + +1.6
407,010 - -0.2
407,016 + +0.0
407,017 - +0.3
407,017 - +2.1
407,052 + -0.1
407,055 + +1.3
407,055 + +0.8
407,056 - -0.5
407,066 - +1.3

Or see this region's nucleotide sequence