Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01836 and BACOVA_01837 are separated by 150 nucleotides BACOVA_01837 and BACOVA_01838 are separated by 241 nucleotides BACOVA_01838 and BACOVA_01839 are separated by 73 nucleotides
BACOVA_01836: BACOVA_01836 - hypothetical protein, at 25,831 to 26,769
_01836
BACOVA_01837: BACOVA_01837 - hypothetical protein, at 26,920 to 27,348
_01837
BACOVA_01838: BACOVA_01838 - arylsulfatase, at 27,590 to 28,942
_01838
BACOVA_01839: BACOVA_01839 - arylsulfatase, at 29,016 to 30,665
_01839
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.602 kb on + strand, within BACOVA_01836 at 26.602 kb on + strand, within BACOVA_01836 at 26.602 kb on + strand, within BACOVA_01836 at 26.602 kb on + strand, within BACOVA_01836 at 26.603 kb on - strand, within BACOVA_01836 at 26.624 kb on - strand, within BACOVA_01836 at 26.671 kb on + strand, within BACOVA_01836 at 26.677 kb on + strand at 26.677 kb on + strand at 26.677 kb on + strand at 26.678 kb on - strand at 26.748 kb on - strand at 26.753 kb on + strand at 26.768 kb on - strand at 26.795 kb on + strand at 26.795 kb on + strand at 26.795 kb on + strand at 26.796 kb on - strand at 26.796 kb on - strand at 26.796 kb on - strand at 26.798 kb on - strand at 26.829 kb on + strand at 26.830 kb on - strand at 26.844 kb on - strand at 26.886 kb on + strand at 26.886 kb on + strand at 26.887 kb on - strand at 26.887 kb on - strand at 26.917 kb on + strand at 26.918 kb on - strand at 26.942 kb on - strand at 26.944 kb on - strand at 26.976 kb on + strand, within BACOVA_01837 at 26.977 kb on - strand, within BACOVA_01837 at 26.977 kb on - strand, within BACOVA_01837 at 27.024 kb on + strand, within BACOVA_01837 at 27.037 kb on + strand, within BACOVA_01837 at 27.038 kb on - strand, within BACOVA_01837 at 27.054 kb on + strand, within BACOVA_01837 at 27.062 kb on + strand, within BACOVA_01837 at 27.062 kb on + strand, within BACOVA_01837 at 27.062 kb on + strand, within BACOVA_01837 at 27.074 kb on + strand, within BACOVA_01837 at 27.092 kb on + strand, within BACOVA_01837 at 27.108 kb on + strand, within BACOVA_01837 at 27.125 kb on + strand, within BACOVA_01837 at 27.126 kb on - strand, within BACOVA_01837 at 27.126 kb on - strand, within BACOVA_01837 at 27.174 kb on - strand, within BACOVA_01837 at 27.174 kb on - strand, within BACOVA_01837 at 27.174 kb on - strand, within BACOVA_01837 at 27.174 kb on - strand, within BACOVA_01837 at 27.174 kb on - strand, within BACOVA_01837 at 27.177 kb on + strand, within BACOVA_01837 at 27.189 kb on + strand, within BACOVA_01837 at 27.239 kb on + strand, within BACOVA_01837 at 27.268 kb on - strand, within BACOVA_01837 at 27.304 kb on - strand, within BACOVA_01837 at 27.308 kb on - strand at 27.323 kb on + strand at 27.382 kb on + strand at 27.387 kb on + strand at 27.388 kb on - strand at 27.393 kb on - strand at 27.397 kb on - strand at 27.404 kb on + strand at 27.404 kb on + strand at 27.405 kb on - strand at 27.424 kb on - strand at 27.435 kb on + strand at 27.454 kb on - strand at 27.480 kb on - strand at 27.536 kb on + strand at 27.571 kb on + strand at 27.610 kb on - strand at 27.634 kb on + strand at 27.665 kb on - strand at 27.665 kb on - strand at 27.670 kb on - strand at 27.672 kb on + strand at 27.672 kb on + strand at 27.673 kb on - strand at 27.676 kb on + strand at 27.677 kb on - strand at 27.677 kb on - strand at 27.677 kb on - strand at 27.691 kb on + strand at 27.691 kb on + strand at 27.692 kb on - strand at 27.708 kb on + strand at 27.709 kb on - strand at 27.771 kb on + strand, within BACOVA_01838 at 27.771 kb on + strand, within BACOVA_01838 at 27.775 kb on - strand, within BACOVA_01838 at 27.785 kb on + strand, within BACOVA_01838 at 27.786 kb on - strand, within BACOVA_01838 at 27.786 kb on - strand, within BACOVA_01838 at 27.789 kb on - strand, within BACOVA_01838 at 27.806 kb on - strand, within BACOVA_01838 at 27.890 kb on - strand, within BACOVA_01838 at 27.910 kb on + strand, within BACOVA_01838 at 27.965 kb on + strand, within BACOVA_01838 at 28.014 kb on + strand, within BACOVA_01838 at 28.041 kb on - strand, within BACOVA_01838 at 28.055 kb on + strand, within BACOVA_01838 at 28.055 kb on + strand, within BACOVA_01838 at 28.055 kb on + strand, within BACOVA_01838 at 28.055 kb on + strand, within BACOVA_01838 at 28.055 kb on + strand, within BACOVA_01838 at 28.056 kb on - strand, within BACOVA_01838 at 28.056 kb on - strand, within BACOVA_01838 at 28.056 kb on - strand, within BACOVA_01838 at 28.060 kb on - strand, within BACOVA_01838 at 28.168 kb on + strand, within BACOVA_01838 at 28.169 kb on - strand, within BACOVA_01838 at 28.174 kb on + strand, within BACOVA_01838 at 28.215 kb on + strand, within BACOVA_01838 at 28.234 kb on + strand, within BACOVA_01838 at 28.234 kb on + strand, within BACOVA_01838 at 28.234 kb on + strand, within BACOVA_01838 at 28.240 kb on + strand, within BACOVA_01838 at 28.241 kb on - strand, within BACOVA_01838 at 28.311 kb on + strand, within BACOVA_01838 at 28.312 kb on - strand, within BACOVA_01838 at 28.314 kb on + strand, within BACOVA_01838 at 28.381 kb on + strand, within BACOVA_01838 at 28.426 kb on + strand, within BACOVA_01838 at 28.435 kb on - strand, within BACOVA_01838 at 28.460 kb on - strand, within BACOVA_01838 at 28.500 kb on + strand, within BACOVA_01838 at 28.500 kb on + strand, within BACOVA_01838 at 28.504 kb on + strand, within BACOVA_01838 at 28.504 kb on + strand, within BACOVA_01838 at 28.504 kb on + strand, within BACOVA_01838 at 28.508 kb on + strand, within BACOVA_01838 at 28.536 kb on + strand, within BACOVA_01838 at 28.540 kb on + strand, within BACOVA_01838 at 28.552 kb on - strand, within BACOVA_01838 at 28.638 kb on - strand, within BACOVA_01838 at 28.736 kb on + strand, within BACOVA_01838 at 28.756 kb on - strand, within BACOVA_01838 at 28.756 kb on - strand, within BACOVA_01838 at 28.760 kb on - strand, within BACOVA_01838 at 28.760 kb on - strand, within BACOVA_01838 at 28.762 kb on - strand, within BACOVA_01838 at 28.783 kb on - strand, within BACOVA_01838 at 28.815 kb on + strand at 28.815 kb on + strand at 28.816 kb on - strand at 28.818 kb on - strand at 28.849 kb on + strand at 28.899 kb on + strand at 28.900 kb on - strand at 28.903 kb on + strand at 28.904 kb on - strand at 28.904 kb on - strand at 28.973 kb on + strand at 28.979 kb on + strand at 28.979 kb on + strand at 28.979 kb on + strand at 29.101 kb on + strand at 29.102 kb on - strand at 29.102 kb on - strand at 29.106 kb on + strand at 29.176 kb on + strand at 29.193 kb on + strand, within BACOVA_01839 at 29.193 kb on + strand, within BACOVA_01839 at 29.193 kb on + strand, within BACOVA_01839 at 29.271 kb on - strand, within BACOVA_01839 at 29.358 kb on + strand, within BACOVA_01839 at 29.363 kb on + strand, within BACOVA_01839 at 29.363 kb on + strand, within BACOVA_01839 at 29.379 kb on - strand, within BACOVA_01839 at 29.440 kb on + strand, within BACOVA_01839 at 29.474 kb on + strand, within BACOVA_01839 at 29.502 kb on + strand, within BACOVA_01839 at 29.503 kb on - strand, within BACOVA_01839 at 29.510 kb on + strand, within BACOVA_01839 at 29.510 kb on + strand, within BACOVA_01839 at 29.511 kb on - strand, within BACOVA_01839 at 29.511 kb on - strand, within BACOVA_01839 at 29.514 kb on + strand, within BACOVA_01839 at 29.521 kb on + strand, within BACOVA_01839 at 29.522 kb on - strand, within BACOVA_01839 at 29.525 kb on - strand, within BACOVA_01839 at 29.552 kb on - strand, within BACOVA_01839 at 29.564 kb on - strand, within BACOVA_01839 at 29.578 kb on + strand, within BACOVA_01839 at 29.590 kb on - strand, within BACOVA_01839 at 29.590 kb on - strand, within BACOVA_01839 at 29.592 kb on + strand, within BACOVA_01839 at 29.593 kb on - strand, within BACOVA_01839 at 29.593 kb on - strand, within BACOVA_01839 at 29.667 kb on - strand, within BACOVA_01839 at 29.680 kb on - strand, within BACOVA_01839 at 29.680 kb on - strand, within BACOVA_01839 at 29.732 kb on + strand, within BACOVA_01839 at 29.732 kb on + strand, within BACOVA_01839 at 29.739 kb on - strand, within BACOVA_01839 at 29.742 kb on + strand, within BACOVA_01839 at 29.742 kb on + strand, within BACOVA_01839 at 29.743 kb on - strand, within BACOVA_01839 at 29.745 kb on - strand, within BACOVA_01839 at 29.745 kb on - strand, within BACOVA_01839 at 29.750 kb on - strand, within BACOVA_01839 at 29.801 kb on + strand, within BACOVA_01839 at 29.802 kb on - strand, within BACOVA_01839 at 29.802 kb on - strand, within BACOVA_01839 at 29.819 kb on + strand, within BACOVA_01839 at 29.862 kb on - strand, within BACOVA_01839
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C) remove 26,602 + BACOVA_01836 0.82 +0.5 26,602 + BACOVA_01836 0.82 +0.1 26,602 + BACOVA_01836 0.82 -0.8 26,602 + BACOVA_01836 0.82 +0.0 26,603 - BACOVA_01836 0.82 -0.2 26,624 - BACOVA_01836 0.84 +0.7 26,671 + BACOVA_01836 0.89 +0.1 26,677 + +0.1 26,677 + -0.2 26,677 + -1.3 26,678 - -1.1 26,748 - -0.9 26,753 + +0.1 26,768 - -0.0 26,795 + -0.1 26,795 + -0.4 26,795 + +1.1 26,796 - +0.4 26,796 - -1.0 26,796 - -0.5 26,798 - +0.3 26,829 + -1.2 26,830 - +0.8 26,844 - -0.1 26,886 + +0.4 26,886 + +0.1 26,887 - +0.3 26,887 - +0.4 26,917 + +0.6 26,918 - +1.8 26,942 - -1.2 26,944 - -0.1 26,976 + BACOVA_01837 0.13 +0.0 26,977 - BACOVA_01837 0.13 -1.7 26,977 - BACOVA_01837 0.13 -0.0 27,024 + BACOVA_01837 0.24 -0.8 27,037 + BACOVA_01837 0.27 +1.8 27,038 - BACOVA_01837 0.28 -0.6 27,054 + BACOVA_01837 0.31 -0.3 27,062 + BACOVA_01837 0.33 +1.1 27,062 + BACOVA_01837 0.33 +0.4 27,062 + BACOVA_01837 0.33 -1.1 27,074 + BACOVA_01837 0.36 -0.3 27,092 + BACOVA_01837 0.40 +0.2 27,108 + BACOVA_01837 0.44 -0.4 27,125 + BACOVA_01837 0.48 +0.6 27,126 - BACOVA_01837 0.48 +1.1 27,126 - BACOVA_01837 0.48 -0.4 27,174 - BACOVA_01837 0.59 -0.1 27,174 - BACOVA_01837 0.59 +1.4 27,174 - BACOVA_01837 0.59 -0.3 27,174 - BACOVA_01837 0.59 -0.3 27,174 - BACOVA_01837 0.59 -0.7 27,177 + BACOVA_01837 0.60 -0.6 27,189 + BACOVA_01837 0.63 -1.5 27,239 + BACOVA_01837 0.74 +1.1 27,268 - BACOVA_01837 0.81 +0.1 27,304 - BACOVA_01837 0.90 -0.1 27,308 - +1.7 27,323 + -0.0 27,382 + +0.9 27,387 + +0.4 27,388 - +0.5 27,393 - +0.7 27,397 - +0.9 27,404 + -0.6 27,404 + -1.4 27,405 - -0.5 27,424 - +0.7 27,435 + -0.8 27,454 - -0.1 27,480 - +2.7 27,536 + +0.2 27,571 + -0.2 27,610 - -0.5 27,634 + -0.8 27,665 - -0.0 27,665 - -0.1 27,670 - +1.7 27,672 + -0.6 27,672 + -1.0 27,673 - -0.9 27,676 + -0.1 27,677 - -0.8 27,677 - -1.1 27,677 - +0.3 27,691 + -1.1 27,691 + +0.3 27,692 - +0.5 27,708 + +0.4 27,709 - +0.2 27,771 + BACOVA_01838 0.13 -0.7 27,771 + BACOVA_01838 0.13 +0.0 27,775 - BACOVA_01838 0.14 +0.1 27,785 + BACOVA_01838 0.14 +0.5 27,786 - BACOVA_01838 0.14 -2.5 27,786 - BACOVA_01838 0.14 -1.7 27,789 - BACOVA_01838 0.15 -0.8 27,806 - BACOVA_01838 0.16 -0.8 27,890 - BACOVA_01838 0.22 -1.0 27,910 + BACOVA_01838 0.24 +0.8 27,965 + BACOVA_01838 0.28 -1.2 28,014 + BACOVA_01838 0.31 -0.0 28,041 - BACOVA_01838 0.33 -0.2 28,055 + BACOVA_01838 0.34 -0.4 28,055 + BACOVA_01838 0.34 -1.7 28,055 + BACOVA_01838 0.34 -1.4 28,055 + BACOVA_01838 0.34 +0.7 28,055 + BACOVA_01838 0.34 -1.0 28,056 - BACOVA_01838 0.34 -0.9 28,056 - BACOVA_01838 0.34 +0.7 28,056 - BACOVA_01838 0.34 +0.5 28,060 - BACOVA_01838 0.35 +1.0 28,168 + BACOVA_01838 0.43 -0.6 28,169 - BACOVA_01838 0.43 -0.1 28,174 + BACOVA_01838 0.43 -2.3 28,215 + BACOVA_01838 0.46 +1.3 28,234 + BACOVA_01838 0.48 -1.4 28,234 + BACOVA_01838 0.48 -0.2 28,234 + BACOVA_01838 0.48 -0.2 28,240 + BACOVA_01838 0.48 +0.2 28,241 - BACOVA_01838 0.48 -0.4 28,311 + BACOVA_01838 0.53 -1.4 28,312 - BACOVA_01838 0.53 -0.6 28,314 + BACOVA_01838 0.54 -1.3 28,381 + BACOVA_01838 0.58 +0.1 28,426 + BACOVA_01838 0.62 +0.2 28,435 - BACOVA_01838 0.62 -0.0 28,460 - BACOVA_01838 0.64 -1.5 28,500 + BACOVA_01838 0.67 +0.6 28,500 + BACOVA_01838 0.67 -0.5 28,504 + BACOVA_01838 0.68 -0.3 28,504 + BACOVA_01838 0.68 -0.4 28,504 + BACOVA_01838 0.68 +0.9 28,508 + BACOVA_01838 0.68 -0.7 28,536 + BACOVA_01838 0.70 +0.4 28,540 + BACOVA_01838 0.70 +0.5 28,552 - BACOVA_01838 0.71 -0.4 28,638 - BACOVA_01838 0.77 +1.5 28,736 + BACOVA_01838 0.85 -0.4 28,756 - BACOVA_01838 0.86 -0.2 28,756 - BACOVA_01838 0.86 -1.6 28,760 - BACOVA_01838 0.86 -1.2 28,760 - BACOVA_01838 0.86 +0.7 28,762 - BACOVA_01838 0.87 -0.5 28,783 - BACOVA_01838 0.88 +0.6 28,815 + +0.1 28,815 + +0.5 28,816 - -0.8 28,818 - -1.1 28,849 + -0.9 28,899 + +1.1 28,900 - +0.5 28,903 + -0.9 28,904 - +0.1 28,904 - +0.0 28,973 + -1.7 28,979 + +2.1 28,979 + -0.3 28,979 + -0.8 29,101 + +1.3 29,102 - +0.4 29,102 - -1.9 29,106 + -0.8 29,176 + -0.3 29,193 + BACOVA_01839 0.11 +0.2 29,193 + BACOVA_01839 0.11 +0.6 29,193 + BACOVA_01839 0.11 +1.7 29,271 - BACOVA_01839 0.15 -1.1 29,358 + BACOVA_01839 0.21 +1.9 29,363 + BACOVA_01839 0.21 +0.7 29,363 + BACOVA_01839 0.21 -0.1 29,379 - BACOVA_01839 0.22 +0.2 29,440 + BACOVA_01839 0.26 -0.3 29,474 + BACOVA_01839 0.28 -0.4 29,502 + BACOVA_01839 0.29 -0.6 29,503 - BACOVA_01839 0.30 +0.6 29,510 + BACOVA_01839 0.30 -0.9 29,510 + BACOVA_01839 0.30 +0.5 29,511 - BACOVA_01839 0.30 +0.1 29,511 - BACOVA_01839 0.30 +1.0 29,514 + BACOVA_01839 0.30 +0.6 29,521 + BACOVA_01839 0.31 -0.6 29,522 - BACOVA_01839 0.31 +0.3 29,525 - BACOVA_01839 0.31 +1.1 29,552 - BACOVA_01839 0.32 +0.1 29,564 - BACOVA_01839 0.33 +0.2 29,578 + BACOVA_01839 0.34 -0.9 29,590 - BACOVA_01839 0.35 -0.2 29,590 - BACOVA_01839 0.35 -0.9 29,592 + BACOVA_01839 0.35 +0.1 29,593 - BACOVA_01839 0.35 +0.1 29,593 - BACOVA_01839 0.35 -0.7 29,667 - BACOVA_01839 0.39 +1.2 29,680 - BACOVA_01839 0.40 +0.4 29,680 - BACOVA_01839 0.40 +0.4 29,732 + BACOVA_01839 0.43 +0.1 29,732 + BACOVA_01839 0.43 +0.3 29,739 - BACOVA_01839 0.44 -1.5 29,742 + BACOVA_01839 0.44 -0.5 29,742 + BACOVA_01839 0.44 +0.2 29,743 - BACOVA_01839 0.44 +1.7 29,745 - BACOVA_01839 0.44 -0.0 29,745 - BACOVA_01839 0.44 +0.0 29,750 - BACOVA_01839 0.44 +0.4 29,801 + BACOVA_01839 0.48 +0.5 29,802 - BACOVA_01839 0.48 +0.2 29,802 - BACOVA_01839 0.48 -0.1 29,819 + BACOVA_01839 0.49 -0.3 29,862 - BACOVA_01839 0.51 +0.1
Or see this region's nucleotide sequence