Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01637

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01636 and BACOVA_01637 are separated by 213 nucleotidesBACOVA_01637 and BACOVA_01638 are separated by 29 nucleotidesBACOVA_01638 and BACOVA_01639 are separated by 219 nucleotides BACOVA_01636: BACOVA_01636 - putative alpha-1,2-mannosidase, at 142,968 to 145,250 _01636 BACOVA_01637: BACOVA_01637 - hypothetical protein, at 145,464 to 147,221 _01637 BACOVA_01638: BACOVA_01638 - DNA-binding helix-turn-helix protein, at 147,251 to 147,724 _01638 BACOVA_01639: BACOVA_01639 - hypothetical protein, at 147,944 to 148,207 _01639 Position (kb) 145 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 144.469 kb on + strand, within BACOVA_01636at 144.582 kb on + strand, within BACOVA_01636at 144.583 kb on - strand, within BACOVA_01636at 144.596 kb on - strand, within BACOVA_01636at 144.596 kb on - strand, within BACOVA_01636at 144.625 kb on + strand, within BACOVA_01636at 144.625 kb on + strand, within BACOVA_01636at 144.647 kb on + strand, within BACOVA_01636at 144.653 kb on + strand, within BACOVA_01636at 144.653 kb on + strand, within BACOVA_01636at 144.677 kb on - strand, within BACOVA_01636at 144.700 kb on - strand, within BACOVA_01636at 144.756 kb on + strand, within BACOVA_01636at 144.757 kb on - strand, within BACOVA_01636at 144.792 kb on + strand, within BACOVA_01636at 144.792 kb on + strand, within BACOVA_01636at 144.792 kb on + strand, within BACOVA_01636at 144.793 kb on - strand, within BACOVA_01636at 144.793 kb on - strand, within BACOVA_01636at 144.798 kb on + strand, within BACOVA_01636at 144.798 kb on + strand, within BACOVA_01636at 144.798 kb on + strand, within BACOVA_01636at 144.798 kb on + strand, within BACOVA_01636at 144.798 kb on + strand, within BACOVA_01636at 144.799 kb on - strand, within BACOVA_01636at 144.799 kb on - strand, within BACOVA_01636at 144.799 kb on - strand, within BACOVA_01636at 144.799 kb on - strand, within BACOVA_01636at 144.832 kb on - strand, within BACOVA_01636at 144.855 kb on - strand, within BACOVA_01636at 144.861 kb on + strand, within BACOVA_01636at 144.861 kb on + strand, within BACOVA_01636at 144.882 kb on + strand, within BACOVA_01636at 144.952 kb on + strand, within BACOVA_01636at 144.952 kb on + strand, within BACOVA_01636at 144.973 kb on - strand, within BACOVA_01636at 144.973 kb on - strand, within BACOVA_01636at 145.010 kb on - strand, within BACOVA_01636at 145.067 kb on + strandat 145.067 kb on + strandat 145.068 kb on - strandat 145.068 kb on - strandat 145.068 kb on - strandat 145.068 kb on - strandat 145.072 kb on - strandat 145.072 kb on - strandat 145.072 kb on - strandat 145.074 kb on - strandat 145.105 kb on - strandat 145.116 kb on + strandat 145.117 kb on - strandat 145.120 kb on + strandat 145.121 kb on - strandat 145.139 kb on - strandat 145.154 kb on + strandat 145.155 kb on - strandat 145.183 kb on + strandat 145.184 kb on - strandat 145.226 kb on + strandat 145.226 kb on + strandat 145.279 kb on + strandat 145.280 kb on - strandat 145.294 kb on + strandat 145.295 kb on - strandat 145.306 kb on + strandat 145.306 kb on + strandat 145.306 kb on + strandat 145.307 kb on - strandat 145.309 kb on + strandat 145.351 kb on + strandat 145.352 kb on - strandat 145.361 kb on - strandat 145.390 kb on - strandat 145.422 kb on - strandat 145.439 kb on + strandat 145.440 kb on - strandat 145.440 kb on - strandat 145.441 kb on + strandat 145.441 kb on + strandat 145.442 kb on - strandat 145.451 kb on + strandat 145.451 kb on + strandat 145.452 kb on - strandat 145.452 kb on - strandat 145.452 kb on - strandat 145.452 kb on - strandat 145.452 kb on - strandat 145.456 kb on + strandat 145.456 kb on + strandat 145.456 kb on + strandat 145.456 kb on + strandat 145.475 kb on + strandat 145.781 kb on - strand, within BACOVA_01637at 145.821 kb on - strand, within BACOVA_01637at 146.244 kb on - strand, within BACOVA_01637at 146.410 kb on - strand, within BACOVA_01637at 146.435 kb on - strand, within BACOVA_01637at 146.851 kb on + strand, within BACOVA_01637at 146.852 kb on - strand, within BACOVA_01637at 146.856 kb on - strand, within BACOVA_01637at 146.991 kb on + strand, within BACOVA_01637at 146.996 kb on - strand, within BACOVA_01637at 147.043 kb on + strand, within BACOVA_01637at 147.110 kb on - strandat 147.294 kb on - strandat 147.304 kb on - strand, within BACOVA_01638at 147.359 kb on - strand, within BACOVA_01638at 147.359 kb on - strand, within BACOVA_01638at 147.383 kb on - strand, within BACOVA_01638at 147.389 kb on - strand, within BACOVA_01638at 147.389 kb on - strand, within BACOVA_01638at 147.413 kb on - strand, within BACOVA_01638at 147.416 kb on + strand, within BACOVA_01638at 147.417 kb on - strand, within BACOVA_01638at 147.417 kb on - strand, within BACOVA_01638at 147.417 kb on - strand, within BACOVA_01638at 147.417 kb on - strand, within BACOVA_01638at 147.419 kb on - strand, within BACOVA_01638at 147.473 kb on - strand, within BACOVA_01638at 147.596 kb on - strand, within BACOVA_01638at 147.620 kb on + strand, within BACOVA_01638at 147.621 kb on - strand, within BACOVA_01638at 147.621 kb on - strand, within BACOVA_01638at 147.650 kb on - strand, within BACOVA_01638at 147.668 kb on - strand, within BACOVA_01638at 147.729 kb on - strandat 147.815 kb on - strandat 147.835 kb on + strandat 148.006 kb on + strand, within BACOVA_01639at 148.010 kb on + strand, within BACOVA_01639at 148.138 kb on - strand, within BACOVA_01639at 148.170 kb on + strand, within BACOVA_01639at 148.192 kb on + strandat 148.192 kb on + strandat 148.206 kb on - strandat 148.213 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
remove
144,469 + BACOVA_01636 0.66 +0.4
144,582 + BACOVA_01636 0.71 +0.1
144,583 - BACOVA_01636 0.71 -0.4
144,596 - BACOVA_01636 0.71 +0.8
144,596 - BACOVA_01636 0.71 +0.0
144,625 + BACOVA_01636 0.73 -0.0
144,625 + BACOVA_01636 0.73 +0.1
144,647 + BACOVA_01636 0.74 -0.0
144,653 + BACOVA_01636 0.74 -0.6
144,653 + BACOVA_01636 0.74 -0.4
144,677 - BACOVA_01636 0.75 +0.2
144,700 - BACOVA_01636 0.76 -0.3
144,756 + BACOVA_01636 0.78 -0.2
144,757 - BACOVA_01636 0.78 -0.2
144,792 + BACOVA_01636 0.80 +0.5
144,792 + BACOVA_01636 0.80 +0.3
144,792 + BACOVA_01636 0.80 -1.9
144,793 - BACOVA_01636 0.80 -1.5
144,793 - BACOVA_01636 0.80 +0.1
144,798 + BACOVA_01636 0.80 +2.4
144,798 + BACOVA_01636 0.80 -1.0
144,798 + BACOVA_01636 0.80 +0.9
144,798 + BACOVA_01636 0.80 -0.3
144,798 + BACOVA_01636 0.80 -0.5
144,799 - BACOVA_01636 0.80 -0.3
144,799 - BACOVA_01636 0.80 -1.2
144,799 - BACOVA_01636 0.80 +0.4
144,799 - BACOVA_01636 0.80 +0.2
144,832 - BACOVA_01636 0.82 -0.5
144,855 - BACOVA_01636 0.83 +0.1
144,861 + BACOVA_01636 0.83 -0.5
144,861 + BACOVA_01636 0.83 +0.4
144,882 + BACOVA_01636 0.84 +0.6
144,952 + BACOVA_01636 0.87 +0.8
144,952 + BACOVA_01636 0.87 -2.3
144,973 - BACOVA_01636 0.88 +0.9
144,973 - BACOVA_01636 0.88 -1.4
145,010 - BACOVA_01636 0.89 -0.1
145,067 + -0.5
145,067 + -0.4
145,068 - +1.1
145,068 - -0.8
145,068 - +0.0
145,068 - +0.5
145,072 - +1.6
145,072 - -0.3
145,072 - -1.5
145,074 - -1.4
145,105 - -0.2
145,116 + -0.5
145,117 - -0.3
145,120 + +0.6
145,121 - -1.3
145,139 - +1.0
145,154 + -0.4
145,155 - +0.7
145,183 + +1.1
145,184 - -0.2
145,226 + -2.5
145,226 + -0.7
145,279 + -0.5
145,280 - -0.3
145,294 + +0.4
145,295 - +1.3
145,306 + -0.6
145,306 + -0.5
145,306 + +0.0
145,307 - +0.6
145,309 + +1.0
145,351 + +0.0
145,352 - +0.7
145,361 - +0.5
145,390 - -1.5
145,422 - -0.1
145,439 + +0.2
145,440 - +1.4
145,440 - +0.6
145,441 + +1.4
145,441 + +1.3
145,442 - +0.0
145,451 + +0.5
145,451 + +1.2
145,452 - -0.9
145,452 - -0.3
145,452 - +0.7
145,452 - -0.5
145,452 - +1.0
145,456 + +0.6
145,456 + -0.1
145,456 + -0.0
145,456 + -0.5
145,475 + -1.1
145,781 - BACOVA_01637 0.18 -0.3
145,821 - BACOVA_01637 0.20 -0.1
146,244 - BACOVA_01637 0.44 +1.0
146,410 - BACOVA_01637 0.54 +0.5
146,435 - BACOVA_01637 0.55 +0.5
146,851 + BACOVA_01637 0.79 +0.5
146,852 - BACOVA_01637 0.79 -2.4
146,856 - BACOVA_01637 0.79 -1.0
146,991 + BACOVA_01637 0.87 -1.0
146,996 - BACOVA_01637 0.87 -1.1
147,043 + BACOVA_01637 0.90 -0.5
147,110 - +0.5
147,294 - +1.5
147,304 - BACOVA_01638 0.11 -1.8
147,359 - BACOVA_01638 0.23 -1.9
147,359 - BACOVA_01638 0.23 +0.9
147,383 - BACOVA_01638 0.28 -1.0
147,389 - BACOVA_01638 0.29 -1.7
147,389 - BACOVA_01638 0.29 -0.3
147,413 - BACOVA_01638 0.34 -1.3
147,416 + BACOVA_01638 0.35 -1.8
147,417 - BACOVA_01638 0.35 -1.5
147,417 - BACOVA_01638 0.35 +1.0
147,417 - BACOVA_01638 0.35 -0.2
147,417 - BACOVA_01638 0.35 -0.5
147,419 - BACOVA_01638 0.35 -0.8
147,473 - BACOVA_01638 0.47 +0.6
147,596 - BACOVA_01638 0.73 -1.5
147,620 + BACOVA_01638 0.78 +1.0
147,621 - BACOVA_01638 0.78 -2.4
147,621 - BACOVA_01638 0.78 +1.0
147,650 - BACOVA_01638 0.84 -0.3
147,668 - BACOVA_01638 0.88 -1.0
147,729 - -0.1
147,815 - +0.2
147,835 + +1.8
148,006 + BACOVA_01639 0.23 -0.4
148,010 + BACOVA_01639 0.25 +1.0
148,138 - BACOVA_01639 0.73 -0.4
148,170 + BACOVA_01639 0.86 -0.2
148,192 + -0.4
148,192 + +0.0
148,206 - -1.3
148,213 + -1.8

Or see this region's nucleotide sequence