Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01251

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01250 and BACOVA_01251 are separated by 86 nucleotidesBACOVA_01251 and BACOVA_01252 are separated by 174 nucleotidesBACOVA_01252 and BACOVA_01253 are separated by 105 nucleotides BACOVA_01250: BACOVA_01250 - sigma factor regulatory protein, FecR/PupR family, at 35,597 to 36,586 _01250 BACOVA_01251: BACOVA_01251 - RNA polymerase sigma-70 factor, at 36,673 to 37,296 _01251 BACOVA_01252: BACOVA_01252 - pirin family protein, at 37,471 to 38,175 _01252 BACOVA_01253: BACOVA_01253 - cytochrome C biogenesis protein transmembrane region, at 38,281 to 40,338 _01253 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 35.758 kb on + strand, within BACOVA_01250at 35.759 kb on - strand, within BACOVA_01250at 35.759 kb on - strand, within BACOVA_01250at 35.794 kb on + strand, within BACOVA_01250at 35.800 kb on + strand, within BACOVA_01250at 35.806 kb on - strand, within BACOVA_01250at 35.863 kb on + strand, within BACOVA_01250at 35.866 kb on - strand, within BACOVA_01250at 35.881 kb on + strand, within BACOVA_01250at 35.887 kb on + strand, within BACOVA_01250at 35.887 kb on + strand, within BACOVA_01250at 35.887 kb on + strand, within BACOVA_01250at 35.888 kb on - strand, within BACOVA_01250at 35.948 kb on - strand, within BACOVA_01250at 35.972 kb on + strand, within BACOVA_01250at 35.973 kb on - strand, within BACOVA_01250at 35.988 kb on + strand, within BACOVA_01250at 35.989 kb on - strand, within BACOVA_01250at 36.014 kb on + strand, within BACOVA_01250at 36.015 kb on - strand, within BACOVA_01250at 36.015 kb on - strand, within BACOVA_01250at 36.253 kb on + strand, within BACOVA_01250at 36.283 kb on + strand, within BACOVA_01250at 36.291 kb on - strand, within BACOVA_01250at 36.294 kb on - strand, within BACOVA_01250at 36.359 kb on - strand, within BACOVA_01250at 36.467 kb on + strand, within BACOVA_01250at 36.467 kb on + strand, within BACOVA_01250at 36.469 kb on + strand, within BACOVA_01250at 36.490 kb on + strandat 36.490 kb on + strandat 36.491 kb on - strandat 36.529 kb on - strandat 36.529 kb on - strandat 36.571 kb on + strandat 36.587 kb on - strandat 36.595 kb on + strandat 36.598 kb on - strandat 36.598 kb on - strandat 36.607 kb on - strandat 36.625 kb on + strandat 36.629 kb on + strandat 36.629 kb on + strandat 36.630 kb on - strandat 36.632 kb on + strandat 36.653 kb on + strandat 36.691 kb on + strandat 36.692 kb on - strandat 36.703 kb on + strandat 36.718 kb on + strandat 36.725 kb on + strandat 36.726 kb on - strandat 36.737 kb on + strand, within BACOVA_01251at 36.755 kb on - strand, within BACOVA_01251at 36.768 kb on + strand, within BACOVA_01251at 36.768 kb on + strand, within BACOVA_01251at 36.783 kb on + strand, within BACOVA_01251at 36.849 kb on + strand, within BACOVA_01251at 36.875 kb on - strand, within BACOVA_01251at 37.026 kb on + strand, within BACOVA_01251at 37.027 kb on - strand, within BACOVA_01251at 37.035 kb on + strand, within BACOVA_01251at 37.036 kb on - strand, within BACOVA_01251at 37.038 kb on + strand, within BACOVA_01251at 37.039 kb on - strand, within BACOVA_01251at 37.041 kb on - strand, within BACOVA_01251at 37.097 kb on - strand, within BACOVA_01251at 37.163 kb on + strand, within BACOVA_01251at 37.179 kb on + strand, within BACOVA_01251at 37.179 kb on + strand, within BACOVA_01251at 37.191 kb on - strand, within BACOVA_01251at 37.255 kb on + strandat 37.271 kb on + strandat 37.275 kb on + strandat 37.276 kb on - strandat 37.302 kb on + strandat 37.308 kb on + strandat 37.309 kb on - strandat 37.317 kb on - strandat 37.324 kb on + strandat 37.325 kb on - strandat 37.388 kb on + strandat 37.392 kb on + strandat 37.407 kb on - strandat 37.409 kb on + strandat 37.409 kb on + strandat 37.410 kb on - strandat 37.410 kb on - strandat 37.410 kb on - strandat 37.412 kb on + strandat 37.482 kb on - strandat 37.507 kb on + strandat 37.507 kb on + strandat 37.507 kb on + strandat 37.559 kb on - strand, within BACOVA_01252at 37.562 kb on - strand, within BACOVA_01252at 37.593 kb on - strand, within BACOVA_01252at 37.617 kb on - strand, within BACOVA_01252at 37.688 kb on - strand, within BACOVA_01252at 37.755 kb on + strand, within BACOVA_01252at 37.824 kb on - strand, within BACOVA_01252at 37.829 kb on + strand, within BACOVA_01252at 37.830 kb on - strand, within BACOVA_01252at 37.983 kb on + strand, within BACOVA_01252at 38.001 kb on - strand, within BACOVA_01252at 38.002 kb on + strand, within BACOVA_01252at 38.002 kb on + strand, within BACOVA_01252at 38.005 kb on - strand, within BACOVA_01252at 38.031 kb on - strand, within BACOVA_01252at 38.031 kb on - strand, within BACOVA_01252at 38.032 kb on + strand, within BACOVA_01252at 38.033 kb on - strand, within BACOVA_01252at 38.034 kb on + strand, within BACOVA_01252at 38.034 kb on + strand, within BACOVA_01252at 38.035 kb on - strand, within BACOVA_01252at 38.035 kb on - strand, within BACOVA_01252at 38.035 kb on - strand, within BACOVA_01252at 38.035 kb on - strand, within BACOVA_01252at 38.094 kb on + strand, within BACOVA_01252at 38.130 kb on + strandat 38.130 kb on + strandat 38.130 kb on + strandat 38.131 kb on - strandat 38.131 kb on - strandat 38.133 kb on - strandat 38.154 kb on - strandat 38.165 kb on + strandat 38.165 kb on + strandat 38.165 kb on + strandat 38.295 kb on + strandat 38.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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35,758 + BACOVA_01250 0.16 -0.6
35,759 - BACOVA_01250 0.16 -1.6
35,759 - BACOVA_01250 0.16 -2.9
35,794 + BACOVA_01250 0.20 +0.3
35,800 + BACOVA_01250 0.21 -0.9
35,806 - BACOVA_01250 0.21 -2.4
35,863 + BACOVA_01250 0.27 -0.0
35,866 - BACOVA_01250 0.27 -2.0
35,881 + BACOVA_01250 0.29 -1.4
35,887 + BACOVA_01250 0.29 -1.0
35,887 + BACOVA_01250 0.29 +0.3
35,887 + BACOVA_01250 0.29 +2.5
35,888 - BACOVA_01250 0.29 -2.0
35,948 - BACOVA_01250 0.35 -2.6
35,972 + BACOVA_01250 0.38 -1.2
35,973 - BACOVA_01250 0.38 -2.9
35,988 + BACOVA_01250 0.39 -1.0
35,989 - BACOVA_01250 0.40 -2.2
36,014 + BACOVA_01250 0.42 -0.2
36,015 - BACOVA_01250 0.42 -2.0
36,015 - BACOVA_01250 0.42 -3.1
36,253 + BACOVA_01250 0.66 +0.9
36,283 + BACOVA_01250 0.69 +0.6
36,291 - BACOVA_01250 0.70 -0.0
36,294 - BACOVA_01250 0.70 -3.4
36,359 - BACOVA_01250 0.77 -1.3
36,467 + BACOVA_01250 0.88 +0.3
36,467 + BACOVA_01250 0.88 -2.5
36,469 + BACOVA_01250 0.88 -0.6
36,490 + +1.0
36,490 + -0.6
36,491 - -2.3
36,529 - -1.9
36,529 - -1.0
36,571 + +0.2
36,587 - -0.0
36,595 + -0.3
36,598 - -2.4
36,598 - -1.9
36,607 - -2.5
36,625 + -0.3
36,629 + -0.3
36,629 + +0.2
36,630 - -3.4
36,632 + -0.0
36,653 + +0.3
36,691 + +0.0
36,692 - -2.0
36,703 + -0.6
36,718 + +0.5
36,725 + +1.0
36,726 - -2.0
36,737 + BACOVA_01251 0.10 +0.6
36,755 - BACOVA_01251 0.13 -1.6
36,768 + BACOVA_01251 0.15 -0.0
36,768 + BACOVA_01251 0.15 -1.7
36,783 + BACOVA_01251 0.18 +1.0
36,849 + BACOVA_01251 0.28 +0.1
36,875 - BACOVA_01251 0.32 -1.0
37,026 + BACOVA_01251 0.57 +1.0
37,027 - BACOVA_01251 0.57 +1.0
37,035 + BACOVA_01251 0.58 -2.7
37,036 - BACOVA_01251 0.58 -0.9
37,038 + BACOVA_01251 0.58 +1.6
37,039 - BACOVA_01251 0.59 -2.0
37,041 - BACOVA_01251 0.59 -2.0
37,097 - BACOVA_01251 0.68 +1.0
37,163 + BACOVA_01251 0.79 -0.0
37,179 + BACOVA_01251 0.81 +0.7
37,179 + BACOVA_01251 0.81 -0.2
37,191 - BACOVA_01251 0.83 -1.7
37,255 + -1.0
37,271 + -0.0
37,275 + -0.2
37,276 - -0.4
37,302 + -0.0
37,308 + -0.9
37,309 - +0.2
37,317 - +0.3
37,324 + +0.8
37,325 - -0.3
37,388 + -0.5
37,392 + -0.6
37,407 - -0.7
37,409 + -0.5
37,409 + +3.0
37,410 - +1.4
37,410 - -0.2
37,410 - -0.0
37,412 + -0.0
37,482 - -0.9
37,507 + +0.4
37,507 + +0.6
37,507 + -0.5
37,559 - BACOVA_01252 0.12 +0.5
37,562 - BACOVA_01252 0.13 -1.1
37,593 - BACOVA_01252 0.17 -0.4
37,617 - BACOVA_01252 0.21 -1.0
37,688 - BACOVA_01252 0.31 +0.0
37,755 + BACOVA_01252 0.40 -0.9
37,824 - BACOVA_01252 0.50 +0.1
37,829 + BACOVA_01252 0.51 -1.0
37,830 - BACOVA_01252 0.51 +0.2
37,983 + BACOVA_01252 0.73 +0.7
38,001 - BACOVA_01252 0.75 -0.8
38,002 + BACOVA_01252 0.75 +0.1
38,002 + BACOVA_01252 0.75 -1.2
38,005 - BACOVA_01252 0.76 +0.1
38,031 - BACOVA_01252 0.79 +0.4
38,031 - BACOVA_01252 0.79 -1.2
38,032 + BACOVA_01252 0.80 -0.1
38,033 - BACOVA_01252 0.80 -0.6
38,034 + BACOVA_01252 0.80 +0.1
38,034 + BACOVA_01252 0.80 -0.6
38,035 - BACOVA_01252 0.80 +1.4
38,035 - BACOVA_01252 0.80 -1.0
38,035 - BACOVA_01252 0.80 +0.4
38,035 - BACOVA_01252 0.80 -0.0
38,094 + BACOVA_01252 0.88 -1.6
38,130 + -0.0
38,130 + +0.4
38,130 + +0.1
38,131 - +0.0
38,131 - +0.3
38,133 - +1.3
38,154 - +0.2
38,165 + -0.2
38,165 + +0.1
38,165 + -0.2
38,295 + -0.1
38,296 - +0.6

Or see this region's nucleotide sequence