Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00869

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00867 and BACOVA_00869 are separated by 11 nucleotidesBACOVA_00869 and BACOVA_00868 overlap by 31 nucleotides BACOVA_00867: BACOVA_00867 - hypothetical protein, at 123,220 to 124,329 _00867 BACOVA_00869: BACOVA_00869 - hypothetical protein, at 124,341 to 124,448 _00869 BACOVA_00868: BACOVA_00868 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 124,418 to 126,832 _00868 Position (kb) 124 125Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 123.403 kb on + strand, within BACOVA_00867at 123.403 kb on + strand, within BACOVA_00867at 123.403 kb on + strand, within BACOVA_00867at 123.404 kb on - strand, within BACOVA_00867at 123.423 kb on + strand, within BACOVA_00867at 123.424 kb on - strand, within BACOVA_00867at 123.442 kb on - strand, within BACOVA_00867at 123.471 kb on + strand, within BACOVA_00867at 123.534 kb on - strand, within BACOVA_00867at 123.578 kb on + strand, within BACOVA_00867at 123.578 kb on + strand, within BACOVA_00867at 123.628 kb on + strand, within BACOVA_00867at 123.644 kb on + strand, within BACOVA_00867at 123.645 kb on - strand, within BACOVA_00867at 123.645 kb on - strand, within BACOVA_00867at 123.647 kb on - strand, within BACOVA_00867at 123.698 kb on - strand, within BACOVA_00867at 123.709 kb on - strand, within BACOVA_00867at 123.741 kb on + strand, within BACOVA_00867at 123.742 kb on - strand, within BACOVA_00867at 123.745 kb on + strand, within BACOVA_00867at 123.746 kb on - strand, within BACOVA_00867at 123.774 kb on - strand, within BACOVA_00867at 123.778 kb on - strand, within BACOVA_00867at 123.795 kb on - strand, within BACOVA_00867at 123.797 kb on - strand, within BACOVA_00867at 123.799 kb on + strand, within BACOVA_00867at 123.799 kb on + strand, within BACOVA_00867at 123.800 kb on - strand, within BACOVA_00867at 123.800 kb on - strand, within BACOVA_00867at 123.800 kb on - strand, within BACOVA_00867at 123.800 kb on - strand, within BACOVA_00867at 123.873 kb on + strand, within BACOVA_00867at 123.874 kb on - strand, within BACOVA_00867at 123.879 kb on + strand, within BACOVA_00867at 123.879 kb on + strand, within BACOVA_00867at 123.924 kb on + strand, within BACOVA_00867at 123.924 kb on + strand, within BACOVA_00867at 123.925 kb on - strand, within BACOVA_00867at 124.004 kb on + strand, within BACOVA_00867at 124.082 kb on - strand, within BACOVA_00867at 124.175 kb on - strand, within BACOVA_00867at 124.192 kb on + strand, within BACOVA_00867at 124.196 kb on + strand, within BACOVA_00867at 124.196 kb on + strand, within BACOVA_00867at 124.197 kb on - strand, within BACOVA_00867at 124.222 kb on + strandat 124.229 kb on - strandat 124.250 kb on + strandat 124.280 kb on - strandat 124.280 kb on - strandat 124.313 kb on - strandat 124.378 kb on + strand, within BACOVA_00869at 124.438 kb on - strandat 124.491 kb on - strandat 124.491 kb on - strandat 124.491 kb on - strandat 124.491 kb on - strandat 124.508 kb on - strandat 124.548 kb on + strandat 124.549 kb on - strandat 124.552 kb on - strandat 124.588 kb on + strandat 124.589 kb on - strandat 124.595 kb on + strandat 124.606 kb on + strandat 124.654 kb on - strandat 124.727 kb on - strand, within BACOVA_00868at 124.830 kb on - strand, within BACOVA_00868at 124.964 kb on - strand, within BACOVA_00868at 124.988 kb on + strand, within BACOVA_00868at 124.990 kb on + strand, within BACOVA_00868at 124.990 kb on + strand, within BACOVA_00868at 125.093 kb on - strand, within BACOVA_00868at 125.093 kb on - strand, within BACOVA_00868at 125.134 kb on + strand, within BACOVA_00868at 125.184 kb on + strand, within BACOVA_00868at 125.210 kb on - strand, within BACOVA_00868at 125.290 kb on + strand, within BACOVA_00868at 125.290 kb on + strand, within BACOVA_00868at 125.290 kb on + strand, within BACOVA_00868at 125.291 kb on - strand, within BACOVA_00868at 125.302 kb on + strand, within BACOVA_00868at 125.344 kb on - strand, within BACOVA_00868at 125.363 kb on - strand, within BACOVA_00868

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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123,403 + BACOVA_00867 0.16 -1.0
123,403 + BACOVA_00867 0.16 +0.1
123,403 + BACOVA_00867 0.16 +0.3
123,404 - BACOVA_00867 0.17 +1.9
123,423 + BACOVA_00867 0.18 +0.1
123,424 - BACOVA_00867 0.18 +0.4
123,442 - BACOVA_00867 0.20 +0.9
123,471 + BACOVA_00867 0.23 +0.1
123,534 - BACOVA_00867 0.28 -0.3
123,578 + BACOVA_00867 0.32 +0.2
123,578 + BACOVA_00867 0.32 -1.1
123,628 + BACOVA_00867 0.37 +1.5
123,644 + BACOVA_00867 0.38 -0.6
123,645 - BACOVA_00867 0.38 +1.2
123,645 - BACOVA_00867 0.38 +1.3
123,647 - BACOVA_00867 0.38 -0.2
123,698 - BACOVA_00867 0.43 +0.2
123,709 - BACOVA_00867 0.44 -0.4
123,741 + BACOVA_00867 0.47 +0.5
123,742 - BACOVA_00867 0.47 -0.9
123,745 + BACOVA_00867 0.47 +0.3
123,746 - BACOVA_00867 0.47 +0.0
123,774 - BACOVA_00867 0.50 -0.4
123,778 - BACOVA_00867 0.50 +0.2
123,795 - BACOVA_00867 0.52 -1.6
123,797 - BACOVA_00867 0.52 +0.7
123,799 + BACOVA_00867 0.52 -0.5
123,799 + BACOVA_00867 0.52 -1.2
123,800 - BACOVA_00867 0.52 -0.3
123,800 - BACOVA_00867 0.52 +0.9
123,800 - BACOVA_00867 0.52 +1.1
123,800 - BACOVA_00867 0.52 +0.5
123,873 + BACOVA_00867 0.59 -0.1
123,874 - BACOVA_00867 0.59 +0.5
123,879 + BACOVA_00867 0.59 -0.8
123,879 + BACOVA_00867 0.59 +1.9
123,924 + BACOVA_00867 0.63 -0.4
123,924 + BACOVA_00867 0.63 -1.8
123,925 - BACOVA_00867 0.64 -1.6
124,004 + BACOVA_00867 0.71 +0.6
124,082 - BACOVA_00867 0.78 +0.4
124,175 - BACOVA_00867 0.86 -0.2
124,192 + BACOVA_00867 0.88 -1.0
124,196 + BACOVA_00867 0.88 -0.1
124,196 + BACOVA_00867 0.88 +0.5
124,197 - BACOVA_00867 0.88 +0.1
124,222 + +0.2
124,229 - -0.1
124,250 + -0.3
124,280 - -2.0
124,280 - +1.3
124,313 - +0.1
124,378 + BACOVA_00869 0.34 -0.9
124,438 - -2.1
124,491 - -0.1
124,491 - -2.6
124,491 - -0.1
124,491 - -3.2
124,508 - -2.8
124,548 + -0.4
124,549 - -2.2
124,552 - -2.1
124,588 + -0.3
124,589 - -1.6
124,595 + -1.6
124,606 + -3.5
124,654 - -4.4
124,727 - BACOVA_00868 0.13 -1.6
124,830 - BACOVA_00868 0.17 -4.0
124,964 - BACOVA_00868 0.23 -1.6
124,988 + BACOVA_00868 0.24 -2.9
124,990 + BACOVA_00868 0.24 -3.5
124,990 + BACOVA_00868 0.24 -2.2
125,093 - BACOVA_00868 0.28 -0.1
125,093 - BACOVA_00868 0.28 -0.4
125,134 + BACOVA_00868 0.30 -1.4
125,184 + BACOVA_00868 0.32 -1.2
125,210 - BACOVA_00868 0.33 -2.4
125,290 + BACOVA_00868 0.36 -1.1
125,290 + BACOVA_00868 0.36 -1.7
125,290 + BACOVA_00868 0.36 -3.6
125,291 - BACOVA_00868 0.36 -1.9
125,302 + BACOVA_00868 0.37 -4.8
125,344 - BACOVA_00868 0.38 -2.7
125,363 - BACOVA_00868 0.39 -0.1

Or see this region's nucleotide sequence