Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00346

Experiment: Arabinoxylan (Rye Flour) 0.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00345 and BACOVA_00346 are separated by 134 nucleotidesBACOVA_00346 and BACOVA_00347 are separated by 24 nucleotidesBACOVA_00347 and BACOVA_00348 are separated by 80 nucleotidesBACOVA_00348 and BACOVA_00349 are separated by 72 nucleotides BACOVA_00345: BACOVA_00345 - OmpA family protein, at 28,031 to 29,218 _00345 BACOVA_00346: BACOVA_00346 - hypothetical protein, at 29,353 to 29,463 _00346 BACOVA_00347: BACOVA_00347 - hypothetical protein, at 29,488 to 29,622 _00347 BACOVA_00348: BACOVA_00348 - hypothetical protein, at 29,703 to 29,864 _00348 BACOVA_00349: BACOVA_00349 - hypothetical protein, at 29,937 to 32,282 _00349 Position (kb) 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.358 kb on - strand, within BACOVA_00345at 28.361 kb on + strand, within BACOVA_00345at 28.362 kb on - strand, within BACOVA_00345at 28.412 kb on + strand, within BACOVA_00345at 28.467 kb on - strand, within BACOVA_00345at 28.482 kb on - strand, within BACOVA_00345at 28.483 kb on - strand, within BACOVA_00345at 28.483 kb on - strand, within BACOVA_00345at 28.492 kb on + strand, within BACOVA_00345at 28.500 kb on - strand, within BACOVA_00345at 28.501 kb on + strand, within BACOVA_00345at 28.526 kb on + strand, within BACOVA_00345at 28.526 kb on + strand, within BACOVA_00345at 28.527 kb on - strand, within BACOVA_00345at 28.527 kb on - strand, within BACOVA_00345at 28.527 kb on - strand, within BACOVA_00345at 28.567 kb on + strand, within BACOVA_00345at 28.663 kb on + strand, within BACOVA_00345at 28.664 kb on - strand, within BACOVA_00345at 28.664 kb on - strand, within BACOVA_00345at 28.682 kb on - strand, within BACOVA_00345at 28.694 kb on - strand, within BACOVA_00345at 28.694 kb on - strand, within BACOVA_00345at 28.709 kb on + strand, within BACOVA_00345at 28.713 kb on - strand, within BACOVA_00345at 28.754 kb on - strand, within BACOVA_00345at 28.810 kb on + strand, within BACOVA_00345at 28.810 kb on + strand, within BACOVA_00345at 28.810 kb on + strand, within BACOVA_00345at 28.813 kb on + strand, within BACOVA_00345at 28.822 kb on - strand, within BACOVA_00345at 28.883 kb on - strand, within BACOVA_00345at 28.892 kb on - strand, within BACOVA_00345at 28.892 kb on - strand, within BACOVA_00345at 28.892 kb on - strand, within BACOVA_00345at 28.894 kb on + strand, within BACOVA_00345at 28.895 kb on - strand, within BACOVA_00345at 28.898 kb on - strand, within BACOVA_00345at 28.910 kb on - strand, within BACOVA_00345at 28.971 kb on - strand, within BACOVA_00345at 28.971 kb on - strand, within BACOVA_00345at 28.986 kb on + strand, within BACOVA_00345at 29.005 kb on + strand, within BACOVA_00345at 29.005 kb on + strand, within BACOVA_00345at 29.009 kb on + strand, within BACOVA_00345at 29.010 kb on - strand, within BACOVA_00345at 29.010 kb on - strand, within BACOVA_00345at 29.010 kb on - strand, within BACOVA_00345at 29.025 kb on - strand, within BACOVA_00345at 29.025 kb on - strand, within BACOVA_00345at 29.044 kb on + strand, within BACOVA_00345at 29.115 kb on - strandat 29.193 kb on + strandat 29.193 kb on + strandat 29.194 kb on - strandat 29.197 kb on - strandat 29.216 kb on + strandat 29.217 kb on - strandat 29.225 kb on - strandat 29.302 kb on + strandat 29.347 kb on + strandat 29.350 kb on + strandat 29.351 kb on - strandat 29.351 kb on - strandat 29.386 kb on - strand, within BACOVA_00346at 29.397 kb on + strand, within BACOVA_00346at 29.397 kb on + strand, within BACOVA_00346at 29.425 kb on - strand, within BACOVA_00346at 29.439 kb on + strand, within BACOVA_00346at 29.454 kb on + strandat 29.454 kb on + strandat 29.454 kb on + strandat 29.454 kb on + strandat 29.461 kb on + strandat 29.462 kb on - strandat 29.476 kb on + strandat 29.476 kb on + strandat 29.477 kb on - strandat 29.500 kb on + strandat 29.500 kb on + strandat 29.508 kb on - strand, within BACOVA_00347at 29.530 kb on - strand, within BACOVA_00347at 29.577 kb on + strand, within BACOVA_00347at 29.628 kb on + strandat 29.628 kb on + strandat 29.628 kb on + strandat 29.628 kb on + strandat 29.628 kb on + strandat 29.629 kb on - strandat 29.629 kb on - strandat 29.629 kb on - strandat 29.660 kb on + strandat 29.660 kb on + strandat 29.674 kb on + strandat 29.704 kb on + strandat 29.730 kb on + strand, within BACOVA_00348at 29.738 kb on + strand, within BACOVA_00348at 29.738 kb on + strand, within BACOVA_00348at 29.755 kb on - strand, within BACOVA_00348at 29.755 kb on - strand, within BACOVA_00348at 29.768 kb on + strand, within BACOVA_00348at 29.772 kb on + strand, within BACOVA_00348at 29.772 kb on + strand, within BACOVA_00348at 29.773 kb on - strand, within BACOVA_00348at 29.774 kb on + strand, within BACOVA_00348at 29.790 kb on - strand, within BACOVA_00348at 29.790 kb on - strand, within BACOVA_00348at 29.805 kb on - strand, within BACOVA_00348at 29.901 kb on - strandat 29.947 kb on + strandat 29.947 kb on + strandat 29.948 kb on - strandat 29.951 kb on + strandat 29.951 kb on + strandat 29.951 kb on + strandat 29.956 kb on + strandat 29.959 kb on - strandat 30.047 kb on - strandat 30.067 kb on - strandat 30.103 kb on + strandat 30.144 kb on - strandat 30.144 kb on - strandat 30.144 kb on - strandat 30.191 kb on + strand, within BACOVA_00349at 30.245 kb on + strand, within BACOVA_00349at 30.246 kb on - strand, within BACOVA_00349at 30.345 kb on - strand, within BACOVA_00349at 30.392 kb on + strand, within BACOVA_00349at 30.392 kb on + strand, within BACOVA_00349at 30.393 kb on - strand, within BACOVA_00349at 30.394 kb on + strand, within BACOVA_00349at 30.395 kb on - strand, within BACOVA_00349at 30.410 kb on - strand, within BACOVA_00349at 30.410 kb on - strand, within BACOVA_00349at 30.410 kb on - strand, within BACOVA_00349at 30.426 kb on + strand, within BACOVA_00349at 30.426 kb on + strand, within BACOVA_00349at 30.426 kb on + strand, within BACOVA_00349at 30.427 kb on - strand, within BACOVA_00349at 30.427 kb on - strand, within BACOVA_00349at 30.438 kb on - strand, within BACOVA_00349

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 0.5 mg/ml (C)
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28,358 - BACOVA_00345 0.28 -0.5
28,361 + BACOVA_00345 0.28 -1.7
28,362 - BACOVA_00345 0.28 +0.3
28,412 + BACOVA_00345 0.32 -0.4
28,467 - BACOVA_00345 0.37 -0.6
28,482 - BACOVA_00345 0.38 -1.9
28,483 - BACOVA_00345 0.38 +1.8
28,483 - BACOVA_00345 0.38 -0.1
28,492 + BACOVA_00345 0.39 -0.4
28,500 - BACOVA_00345 0.39 +0.6
28,501 + BACOVA_00345 0.40 -0.8
28,526 + BACOVA_00345 0.42 -0.4
28,526 + BACOVA_00345 0.42 +1.6
28,527 - BACOVA_00345 0.42 +0.6
28,527 - BACOVA_00345 0.42 -0.3
28,527 - BACOVA_00345 0.42 +0.3
28,567 + BACOVA_00345 0.45 -0.5
28,663 + BACOVA_00345 0.53 -1.0
28,664 - BACOVA_00345 0.53 +0.2
28,664 - BACOVA_00345 0.53 -1.4
28,682 - BACOVA_00345 0.55 -0.5
28,694 - BACOVA_00345 0.56 -0.2
28,694 - BACOVA_00345 0.56 -1.0
28,709 + BACOVA_00345 0.57 +0.5
28,713 - BACOVA_00345 0.57 -0.2
28,754 - BACOVA_00345 0.61 +0.7
28,810 + BACOVA_00345 0.66 +0.2
28,810 + BACOVA_00345 0.66 -0.9
28,810 + BACOVA_00345 0.66 -0.5
28,813 + BACOVA_00345 0.66 -1.4
28,822 - BACOVA_00345 0.67 +1.3
28,883 - BACOVA_00345 0.72 +0.1
28,892 - BACOVA_00345 0.72 -1.5
28,892 - BACOVA_00345 0.72 -0.4
28,892 - BACOVA_00345 0.72 -1.4
28,894 + BACOVA_00345 0.73 -1.9
28,895 - BACOVA_00345 0.73 +1.0
28,898 - BACOVA_00345 0.73 +1.0
28,910 - BACOVA_00345 0.74 -1.0
28,971 - BACOVA_00345 0.79 +0.1
28,971 - BACOVA_00345 0.79 -0.3
28,986 + BACOVA_00345 0.80 -1.6
29,005 + BACOVA_00345 0.82 +0.7
29,005 + BACOVA_00345 0.82 +0.4
29,009 + BACOVA_00345 0.82 -0.5
29,010 - BACOVA_00345 0.82 -0.5
29,010 - BACOVA_00345 0.82 -2.8
29,010 - BACOVA_00345 0.82 +0.0
29,025 - BACOVA_00345 0.84 -1.2
29,025 - BACOVA_00345 0.84 -1.4
29,044 + BACOVA_00345 0.85 -0.5
29,115 - +0.2
29,193 + -0.5
29,193 + -1.3
29,194 - +0.0
29,197 - -0.8
29,216 + -0.2
29,217 - +0.3
29,225 - -0.8
29,302 + -0.1
29,347 + -0.6
29,350 + -0.0
29,351 - +0.2
29,351 - -0.5
29,386 - BACOVA_00346 0.30 -0.8
29,397 + BACOVA_00346 0.40 +3.0
29,397 + BACOVA_00346 0.40 -0.6
29,425 - BACOVA_00346 0.65 +0.5
29,439 + BACOVA_00346 0.77 -0.5
29,454 + -0.4
29,454 + -0.1
29,454 + -0.7
29,454 + +0.8
29,461 + +0.3
29,462 - -0.6
29,476 + -1.1
29,476 + -1.3
29,477 - -1.7
29,500 + +0.0
29,500 + -0.1
29,508 - BACOVA_00347 0.15 +0.5
29,530 - BACOVA_00347 0.31 -0.5
29,577 + BACOVA_00347 0.66 +1.5
29,628 + -0.9
29,628 + +0.4
29,628 + -0.1
29,628 + -0.4
29,628 + -0.1
29,629 - -0.4
29,629 - +0.0
29,629 - -0.1
29,660 + -0.8
29,660 + +1.4
29,674 + -1.0
29,704 + -0.7
29,730 + BACOVA_00348 0.17 +1.2
29,738 + BACOVA_00348 0.22 +0.2
29,738 + BACOVA_00348 0.22 +0.5
29,755 - BACOVA_00348 0.32 -0.2
29,755 - BACOVA_00348 0.32 +0.5
29,768 + BACOVA_00348 0.40 -0.4
29,772 + BACOVA_00348 0.43 -0.2
29,772 + BACOVA_00348 0.43 +0.5
29,773 - BACOVA_00348 0.43 +0.0
29,774 + BACOVA_00348 0.44 -0.5
29,790 - BACOVA_00348 0.54 +1.0
29,790 - BACOVA_00348 0.54 -0.7
29,805 - BACOVA_00348 0.63 +1.5
29,901 - -0.7
29,947 + +0.6
29,947 + +0.5
29,948 - +0.4
29,951 + -0.0
29,951 + -1.0
29,951 + -0.0
29,956 + -0.6
29,959 - +0.2
30,047 - -1.6
30,067 - -1.0
30,103 + +1.6
30,144 - -0.2
30,144 - -1.2
30,144 - +0.4
30,191 + BACOVA_00349 0.11 +0.1
30,245 + BACOVA_00349 0.13 -0.1
30,246 - BACOVA_00349 0.13 -0.6
30,345 - BACOVA_00349 0.17 -0.2
30,392 + BACOVA_00349 0.19 -0.7
30,392 + BACOVA_00349 0.19 -0.3
30,393 - BACOVA_00349 0.19 -0.0
30,394 + BACOVA_00349 0.19 +0.0
30,395 - BACOVA_00349 0.20 -0.0
30,410 - BACOVA_00349 0.20 +0.1
30,410 - BACOVA_00349 0.20 +1.0
30,410 - BACOVA_00349 0.20 -0.4
30,426 + BACOVA_00349 0.21 +0.1
30,426 + BACOVA_00349 0.21 -1.3
30,426 + BACOVA_00349 0.21 +0.6
30,427 - BACOVA_00349 0.21 -0.4
30,427 - BACOVA_00349 0.21 +0.8
30,438 - BACOVA_00349 0.21 -0.3

Or see this region's nucleotide sequence