Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03635 and BACOVA_03636 are separated by 57 nucleotides BACOVA_03636 and BACOVA_03637 are separated by 119 nucleotides BACOVA_03637 and BACOVA_03638 are separated by 274 nucleotides
BACOVA_03635: BACOVA_03635 - SusD family protein, at 451,056 to 452,984
_03635
BACOVA_03636: BACOVA_03636 - hypothetical protein, at 453,042 to 454,586
_03636
BACOVA_03637: BACOVA_03637 - hypothetical protein, at 454,706 to 454,972
_03637
BACOVA_03638: BACOVA_03638 - arylsulfatase, at 455,247 to 456,803
_03638
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 452.048 kb on + strand, within BACOVA_03635 at 452.084 kb on + strand, within BACOVA_03635 at 452.085 kb on - strand, within BACOVA_03635 at 452.155 kb on - strand, within BACOVA_03635 at 452.156 kb on + strand, within BACOVA_03635 at 452.161 kb on + strand, within BACOVA_03635 at 452.222 kb on + strand, within BACOVA_03635 at 452.223 kb on - strand, within BACOVA_03635 at 452.294 kb on + strand, within BACOVA_03635 at 452.301 kb on - strand, within BACOVA_03635 at 452.380 kb on - strand, within BACOVA_03635 at 452.476 kb on - strand, within BACOVA_03635 at 452.476 kb on - strand, within BACOVA_03635 at 452.490 kb on - strand, within BACOVA_03635 at 452.490 kb on - strand, within BACOVA_03635 at 452.521 kb on - strand, within BACOVA_03635 at 452.555 kb on + strand, within BACOVA_03635 at 452.579 kb on - strand, within BACOVA_03635 at 452.585 kb on + strand, within BACOVA_03635 at 452.750 kb on + strand, within BACOVA_03635 at 452.897 kb on + strand at 452.898 kb on - strand at 452.898 kb on - strand at 452.916 kb on + strand at 452.916 kb on + strand at 452.917 kb on - strand at 452.917 kb on - strand at 452.991 kb on - strand at 452.999 kb on - strand at 452.999 kb on - strand at 453.034 kb on - strand at 453.036 kb on - strand at 453.036 kb on - strand at 453.039 kb on + strand at 453.039 kb on + strand at 453.039 kb on + strand at 453.039 kb on + strand at 453.039 kb on + strand at 453.039 kb on + strand at 453.039 kb on + strand at 453.040 kb on - strand at 453.040 kb on - strand at 453.040 kb on - strand at 453.041 kb on + strand at 453.041 kb on + strand at 453.041 kb on + strand at 453.041 kb on + strand at 453.041 kb on + strand at 453.041 kb on + strand at 453.041 kb on + strand at 453.042 kb on - strand at 453.042 kb on - strand at 453.042 kb on - strand at 453.042 kb on - strand at 453.065 kb on - strand at 453.148 kb on + strand at 453.148 kb on + strand at 453.148 kb on + strand at 453.153 kb on - strand at 453.204 kb on + strand, within BACOVA_03636 at 453.204 kb on + strand, within BACOVA_03636 at 453.204 kb on + strand, within BACOVA_03636 at 453.205 kb on - strand, within BACOVA_03636 at 453.243 kb on - strand, within BACOVA_03636 at 453.325 kb on + strand, within BACOVA_03636 at 453.349 kb on + strand, within BACOVA_03636 at 453.349 kb on + strand, within BACOVA_03636 at 453.350 kb on - strand, within BACOVA_03636 at 453.423 kb on - strand, within BACOVA_03636 at 453.459 kb on + strand, within BACOVA_03636 at 453.460 kb on - strand, within BACOVA_03636 at 453.498 kb on - strand, within BACOVA_03636 at 453.548 kb on + strand, within BACOVA_03636 at 453.548 kb on + strand, within BACOVA_03636 at 453.573 kb on - strand, within BACOVA_03636 at 453.617 kb on + strand, within BACOVA_03636 at 453.660 kb on - strand, within BACOVA_03636 at 453.672 kb on - strand, within BACOVA_03636 at 453.696 kb on + strand, within BACOVA_03636 at 453.699 kb on - strand, within BACOVA_03636 at 453.728 kb on - strand, within BACOVA_03636 at 453.731 kb on + strand, within BACOVA_03636 at 453.823 kb on + strand, within BACOVA_03636 at 453.824 kb on - strand, within BACOVA_03636 at 453.836 kb on + strand, within BACOVA_03636 at 453.854 kb on + strand, within BACOVA_03636 at 453.855 kb on - strand, within BACOVA_03636 at 453.855 kb on - strand, within BACOVA_03636 at 453.855 kb on - strand, within BACOVA_03636 at 453.855 kb on - strand, within BACOVA_03636 at 453.868 kb on + strand, within BACOVA_03636 at 453.869 kb on - strand, within BACOVA_03636 at 453.911 kb on + strand, within BACOVA_03636 at 453.912 kb on - strand, within BACOVA_03636 at 453.941 kb on + strand, within BACOVA_03636 at 453.965 kb on - strand, within BACOVA_03636 at 453.968 kb on + strand, within BACOVA_03636 at 454.061 kb on + strand, within BACOVA_03636 at 454.118 kb on + strand, within BACOVA_03636 at 454.139 kb on + strand, within BACOVA_03636 at 454.140 kb on - strand, within BACOVA_03636 at 454.140 kb on - strand, within BACOVA_03636 at 454.147 kb on + strand, within BACOVA_03636 at 454.148 kb on - strand, within BACOVA_03636 at 454.157 kb on + strand, within BACOVA_03636 at 454.158 kb on - strand, within BACOVA_03636 at 454.191 kb on - strand, within BACOVA_03636 at 454.194 kb on - strand, within BACOVA_03636 at 454.221 kb on + strand, within BACOVA_03636 at 454.225 kb on + strand, within BACOVA_03636 at 454.354 kb on - strand, within BACOVA_03636 at 454.361 kb on + strand, within BACOVA_03636 at 454.362 kb on - strand, within BACOVA_03636 at 454.427 kb on + strand, within BACOVA_03636 at 454.427 kb on + strand, within BACOVA_03636 at 454.441 kb on + strand at 454.441 kb on + strand at 454.445 kb on + strand at 454.472 kb on + strand at 454.572 kb on - strand at 454.577 kb on + strand at 454.584 kb on + strand at 454.584 kb on + strand at 454.599 kb on - strand at 454.636 kb on + strand at 454.637 kb on - strand at 454.654 kb on + strand at 454.655 kb on - strand at 454.664 kb on - strand at 454.664 kb on - strand at 454.666 kb on + strand at 454.681 kb on + strand at 454.681 kb on + strand at 454.708 kb on - strand at 454.745 kb on - strand, within BACOVA_03637 at 454.820 kb on - strand, within BACOVA_03637 at 454.824 kb on - strand, within BACOVA_03637 at 454.835 kb on + strand, within BACOVA_03637 at 454.910 kb on + strand, within BACOVA_03637 at 454.911 kb on - strand, within BACOVA_03637 at 454.939 kb on + strand, within BACOVA_03637 at 454.953 kb on - strand at 454.955 kb on + strand at 454.961 kb on + strand at 454.993 kb on - strand at 454.993 kb on - strand at 454.995 kb on + strand at 454.995 kb on + strand at 454.995 kb on + strand at 455.001 kb on + strand at 455.002 kb on - strand at 455.002 kb on - strand at 455.029 kb on - strand at 455.099 kb on - strand at 455.104 kb on - strand at 455.146 kb on - strand at 455.204 kb on - strand at 455.244 kb on + strand at 455.245 kb on - strand at 455.245 kb on - strand at 455.248 kb on + strand at 455.252 kb on + strand at 455.279 kb on + strand at 455.280 kb on - strand at 455.280 kb on - strand at 455.397 kb on + strand at 455.398 kb on - strand at 455.398 kb on - strand at 455.399 kb on + strand at 455.419 kb on - strand, within BACOVA_03638 at 455.484 kb on - strand, within BACOVA_03638
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C) remove 452,048 + BACOVA_03635 0.51 -3.2 452,084 + BACOVA_03635 0.53 -2.8 452,085 - BACOVA_03635 0.53 -1.8 452,155 - BACOVA_03635 0.57 -1.4 452,156 + BACOVA_03635 0.57 -0.9 452,161 + BACOVA_03635 0.57 -1.0 452,222 + BACOVA_03635 0.60 -1.9 452,223 - BACOVA_03635 0.60 -0.4 452,294 + BACOVA_03635 0.64 -0.4 452,301 - BACOVA_03635 0.65 -1.5 452,380 - BACOVA_03635 0.69 -1.7 452,476 - BACOVA_03635 0.74 -1.6 452,476 - BACOVA_03635 0.74 -2.0 452,490 - BACOVA_03635 0.74 -0.8 452,490 - BACOVA_03635 0.74 -1.8 452,521 - BACOVA_03635 0.76 -0.5 452,555 + BACOVA_03635 0.78 -0.4 452,579 - BACOVA_03635 0.79 -2.4 452,585 + BACOVA_03635 0.79 -2.2 452,750 + BACOVA_03635 0.88 -1.2 452,897 + -1.1 452,898 - -2.3 452,898 - +0.2 452,916 + -1.1 452,916 + -1.6 452,917 - +0.1 452,917 - -1.5 452,991 - -1.1 452,999 - -0.8 452,999 - -0.3 453,034 - -1.8 453,036 - -1.4 453,036 - -1.2 453,039 + +0.1 453,039 + +1.8 453,039 + +0.0 453,039 + +0.2 453,039 + +1.2 453,039 + +0.2 453,039 + -1.3 453,040 - -3.3 453,040 - -0.8 453,040 - -0.9 453,041 + -1.2 453,041 + +0.0 453,041 + -0.4 453,041 + +0.6 453,041 + -0.8 453,041 + -1.4 453,041 + -1.5 453,042 - -1.5 453,042 - -0.9 453,042 - -1.2 453,042 - -2.7 453,065 - -1.4 453,148 + -0.3 453,148 + +0.2 453,148 + -0.2 453,153 - -1.9 453,204 + BACOVA_03636 0.10 -0.9 453,204 + BACOVA_03636 0.10 -0.9 453,204 + BACOVA_03636 0.10 -0.9 453,205 - BACOVA_03636 0.11 -1.1 453,243 - BACOVA_03636 0.13 +0.0 453,325 + BACOVA_03636 0.18 +0.2 453,349 + BACOVA_03636 0.20 -1.1 453,349 + BACOVA_03636 0.20 -0.4 453,350 - BACOVA_03636 0.20 +0.2 453,423 - BACOVA_03636 0.25 -0.4 453,459 + BACOVA_03636 0.27 +0.2 453,460 - BACOVA_03636 0.27 -1.6 453,498 - BACOVA_03636 0.30 +0.1 453,548 + BACOVA_03636 0.33 -1.8 453,548 + BACOVA_03636 0.33 -1.0 453,573 - BACOVA_03636 0.34 -0.5 453,617 + BACOVA_03636 0.37 -1.8 453,660 - BACOVA_03636 0.40 -0.5 453,672 - BACOVA_03636 0.41 -1.0 453,696 + BACOVA_03636 0.42 -0.8 453,699 - BACOVA_03636 0.43 -0.0 453,728 - BACOVA_03636 0.44 -0.4 453,731 + BACOVA_03636 0.45 -0.9 453,823 + BACOVA_03636 0.51 +0.1 453,824 - BACOVA_03636 0.51 -0.5 453,836 + BACOVA_03636 0.51 -1.6 453,854 + BACOVA_03636 0.53 -1.5 453,855 - BACOVA_03636 0.53 +0.2 453,855 - BACOVA_03636 0.53 +0.3 453,855 - BACOVA_03636 0.53 -0.9 453,855 - BACOVA_03636 0.53 -0.2 453,868 + BACOVA_03636 0.53 +0.5 453,869 - BACOVA_03636 0.54 -0.9 453,911 + BACOVA_03636 0.56 +0.2 453,912 - BACOVA_03636 0.56 -0.9 453,941 + BACOVA_03636 0.58 -0.6 453,965 - BACOVA_03636 0.60 +1.1 453,968 + BACOVA_03636 0.60 -0.4 454,061 + BACOVA_03636 0.66 +2.2 454,118 + BACOVA_03636 0.70 -0.6 454,139 + BACOVA_03636 0.71 -0.5 454,140 - BACOVA_03636 0.71 -0.1 454,140 - BACOVA_03636 0.71 -0.5 454,147 + BACOVA_03636 0.72 -0.4 454,148 - BACOVA_03636 0.72 -0.9 454,157 + BACOVA_03636 0.72 -0.6 454,158 - BACOVA_03636 0.72 -0.8 454,191 - BACOVA_03636 0.74 -1.5 454,194 - BACOVA_03636 0.75 -0.1 454,221 + BACOVA_03636 0.76 +0.0 454,225 + BACOVA_03636 0.77 -0.9 454,354 - BACOVA_03636 0.85 -0.6 454,361 + BACOVA_03636 0.85 -2.5 454,362 - BACOVA_03636 0.85 -1.1 454,427 + BACOVA_03636 0.90 -0.5 454,427 + BACOVA_03636 0.90 -0.2 454,441 + -1.5 454,441 + -1.4 454,445 + +0.0 454,472 + +0.4 454,572 - -0.6 454,577 + -0.8 454,584 + -0.6 454,584 + +0.6 454,599 - -0.4 454,636 + -0.4 454,637 - -1.6 454,654 + -0.1 454,655 - +1.2 454,664 - +0.6 454,664 - -0.3 454,666 + +0.3 454,681 + +1.6 454,681 + -0.1 454,708 - -0.2 454,745 - BACOVA_03637 0.15 -0.6 454,820 - BACOVA_03637 0.43 +0.3 454,824 - BACOVA_03637 0.44 +0.2 454,835 + BACOVA_03637 0.48 -1.4 454,910 + BACOVA_03637 0.76 -1.1 454,911 - BACOVA_03637 0.77 -0.3 454,939 + BACOVA_03637 0.87 +1.2 454,953 - -0.1 454,955 + +0.4 454,961 + +1.0 454,993 - -0.4 454,993 - +0.9 454,995 + +0.0 454,995 + +0.8 454,995 + -0.4 455,001 + +0.0 455,002 - -0.6 455,002 - +2.0 455,029 - +0.0 455,099 - -0.4 455,104 - -1.1 455,146 - -0.4 455,204 - +1.4 455,244 + -0.3 455,245 - -1.1 455,245 - +0.1 455,248 + +0.2 455,252 + +0.7 455,279 + +0.1 455,280 - -1.0 455,280 - -0.9 455,397 + -0.4 455,398 - -0.2 455,398 - +0.6 455,399 + -0.9 455,419 - BACOVA_03638 0.11 +0.7 455,484 - BACOVA_03638 0.15 -0.2
Or see this region's nucleotide sequence