Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03625

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03624 and BACOVA_03625 are separated by 173 nucleotidesBACOVA_03625 and BACOVA_03626 are separated by 211 nucleotides BACOVA_03624: BACOVA_03624 - hypothetical protein, at 431,810 to 432,970 _03624 BACOVA_03625: BACOVA_03625 - hypothetical protein, at 433,144 to 433,254 _03625 BACOVA_03626: BACOVA_03626 - hypothetical protein, at 433,466 to 434,911 _03626 Position (kb) 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 432.181 kb on - strand, within BACOVA_03624at 432.210 kb on - strand, within BACOVA_03624at 432.263 kb on - strand, within BACOVA_03624at 432.291 kb on + strand, within BACOVA_03624at 432.322 kb on + strand, within BACOVA_03624at 432.356 kb on - strand, within BACOVA_03624at 432.493 kb on - strand, within BACOVA_03624at 432.493 kb on - strand, within BACOVA_03624at 432.500 kb on + strand, within BACOVA_03624at 432.501 kb on - strand, within BACOVA_03624at 432.501 kb on - strand, within BACOVA_03624at 432.501 kb on - strand, within BACOVA_03624at 432.501 kb on - strand, within BACOVA_03624at 432.507 kb on - strand, within BACOVA_03624at 432.593 kb on + strand, within BACOVA_03624at 432.671 kb on - strand, within BACOVA_03624at 432.686 kb on - strand, within BACOVA_03624at 432.686 kb on - strand, within BACOVA_03624at 432.723 kb on + strand, within BACOVA_03624at 432.724 kb on - strand, within BACOVA_03624at 432.730 kb on + strand, within BACOVA_03624at 432.730 kb on + strand, within BACOVA_03624at 432.811 kb on + strand, within BACOVA_03624at 432.819 kb on - strand, within BACOVA_03624at 432.819 kb on - strand, within BACOVA_03624at 432.819 kb on - strand, within BACOVA_03624at 432.932 kb on - strandat 432.934 kb on + strandat 432.962 kb on - strandat 432.971 kb on - strandat 432.971 kb on - strandat 432.975 kb on + strandat 432.975 kb on + strandat 432.975 kb on + strandat 432.975 kb on + strandat 432.975 kb on + strandat 432.976 kb on - strandat 432.976 kb on - strandat 433.003 kb on - strandat 433.003 kb on - strandat 433.011 kb on + strandat 433.011 kb on + strandat 433.012 kb on - strandat 433.012 kb on - strandat 433.016 kb on - strandat 433.029 kb on + strandat 433.034 kb on - strandat 433.084 kb on - strandat 433.186 kb on + strand, within BACOVA_03625at 433.186 kb on + strand, within BACOVA_03625at 433.187 kb on - strand, within BACOVA_03625at 433.187 kb on - strand, within BACOVA_03625at 433.187 kb on - strand, within BACOVA_03625at 433.206 kb on + strand, within BACOVA_03625at 433.228 kb on + strand, within BACOVA_03625at 433.229 kb on - strand, within BACOVA_03625at 433.258 kb on + strandat 433.426 kb on + strandat 433.459 kb on + strandat 433.459 kb on + strandat 433.460 kb on - strandat 433.467 kb on + strandat 433.477 kb on + strandat 433.478 kb on - strandat 433.515 kb on - strandat 433.538 kb on - strandat 433.624 kb on + strand, within BACOVA_03626at 433.691 kb on - strand, within BACOVA_03626at 433.694 kb on - strand, within BACOVA_03626at 433.768 kb on - strand, within BACOVA_03626at 433.774 kb on + strand, within BACOVA_03626at 433.774 kb on + strand, within BACOVA_03626at 433.775 kb on - strand, within BACOVA_03626at 433.787 kb on + strand, within BACOVA_03626at 433.813 kb on + strand, within BACOVA_03626at 433.842 kb on + strand, within BACOVA_03626at 433.842 kb on + strand, within BACOVA_03626at 433.884 kb on - strand, within BACOVA_03626at 433.932 kb on + strand, within BACOVA_03626at 433.947 kb on + strand, within BACOVA_03626at 433.993 kb on + strand, within BACOVA_03626at 433.993 kb on + strand, within BACOVA_03626at 433.993 kb on + strand, within BACOVA_03626at 433.994 kb on - strand, within BACOVA_03626at 433.997 kb on - strand, within BACOVA_03626at 434.061 kb on + strand, within BACOVA_03626at 434.066 kb on + strand, within BACOVA_03626at 434.157 kb on - strand, within BACOVA_03626at 434.157 kb on - strand, within BACOVA_03626at 434.188 kb on + strand, within BACOVA_03626at 434.209 kb on - strand, within BACOVA_03626

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
remove
432,181 - BACOVA_03624 0.32 -0.9
432,210 - BACOVA_03624 0.34 -0.2
432,263 - BACOVA_03624 0.39 +1.0
432,291 + BACOVA_03624 0.41 -0.4
432,322 + BACOVA_03624 0.44 +0.9
432,356 - BACOVA_03624 0.47 +1.1
432,493 - BACOVA_03624 0.59 -0.6
432,493 - BACOVA_03624 0.59 +0.0
432,500 + BACOVA_03624 0.59 -0.3
432,501 - BACOVA_03624 0.60 +0.1
432,501 - BACOVA_03624 0.60 +0.4
432,501 - BACOVA_03624 0.60 -0.6
432,501 - BACOVA_03624 0.60 -0.8
432,507 - BACOVA_03624 0.60 -0.6
432,593 + BACOVA_03624 0.67 +0.9
432,671 - BACOVA_03624 0.74 +0.3
432,686 - BACOVA_03624 0.75 +0.2
432,686 - BACOVA_03624 0.75 +0.8
432,723 + BACOVA_03624 0.79 -0.6
432,724 - BACOVA_03624 0.79 +0.2
432,730 + BACOVA_03624 0.79 -0.1
432,730 + BACOVA_03624 0.79 +0.5
432,811 + BACOVA_03624 0.86 -0.6
432,819 - BACOVA_03624 0.87 -1.6
432,819 - BACOVA_03624 0.87 +0.7
432,819 - BACOVA_03624 0.87 -0.5
432,932 - -0.1
432,934 + -0.9
432,962 - -0.1
432,971 - +0.0
432,971 - -1.0
432,975 + +0.3
432,975 + -1.1
432,975 + -0.3
432,975 + +0.2
432,975 + -2.4
432,976 - -0.1
432,976 - +0.7
433,003 - +0.3
433,003 - +0.7
433,011 + -1.5
433,011 + +0.0
433,012 - +0.1
433,012 - -0.4
433,016 - +0.8
433,029 + -0.0
433,034 - -0.1
433,084 - -0.4
433,186 + BACOVA_03625 0.38 +1.0
433,186 + BACOVA_03625 0.38 -2.6
433,187 - BACOVA_03625 0.39 -0.4
433,187 - BACOVA_03625 0.39 -0.3
433,187 - BACOVA_03625 0.39 +1.2
433,206 + BACOVA_03625 0.56 +0.1
433,228 + BACOVA_03625 0.76 +0.3
433,229 - BACOVA_03625 0.77 +1.2
433,258 + +1.4
433,426 + -0.0
433,459 + +0.6
433,459 + -0.1
433,460 - +0.4
433,467 + -0.3
433,477 + -0.6
433,478 - -2.1
433,515 - +1.4
433,538 - +0.9
433,624 + BACOVA_03626 0.11 -0.1
433,691 - BACOVA_03626 0.16 -0.1
433,694 - BACOVA_03626 0.16 -0.9
433,768 - BACOVA_03626 0.21 -0.8
433,774 + BACOVA_03626 0.21 -0.2
433,774 + BACOVA_03626 0.21 +1.6
433,775 - BACOVA_03626 0.21 +1.6
433,787 + BACOVA_03626 0.22 -0.3
433,813 + BACOVA_03626 0.24 +2.1
433,842 + BACOVA_03626 0.26 +0.2
433,842 + BACOVA_03626 0.26 +0.7
433,884 - BACOVA_03626 0.29 -0.1
433,932 + BACOVA_03626 0.32 -0.8
433,947 + BACOVA_03626 0.33 -0.4
433,993 + BACOVA_03626 0.36 -0.9
433,993 + BACOVA_03626 0.36 -2.6
433,993 + BACOVA_03626 0.36 +0.8
433,994 - BACOVA_03626 0.37 -0.4
433,997 - BACOVA_03626 0.37 -1.1
434,061 + BACOVA_03626 0.41 -0.8
434,066 + BACOVA_03626 0.41 -0.8
434,157 - BACOVA_03626 0.48 -0.4
434,157 - BACOVA_03626 0.48 +0.1
434,188 + BACOVA_03626 0.50 +0.6
434,209 - BACOVA_03626 0.51 -0.6

Or see this region's nucleotide sequence