Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03101 and BACOVA_03102 are separated by 60 nucleotides BACOVA_03102 and BACOVA_03103 are separated by 175 nucleotides BACOVA_03103 and BACOVA_03104 are separated by 54 nucleotides
BACOVA_03101: BACOVA_03101 - hypothetical protein, at 187,932 to 189,347
_03101
BACOVA_03102: BACOVA_03102 - hypothetical protein, at 189,408 to 190,910
_03102
BACOVA_03103: BACOVA_03103 - UMP kinase, at 191,086 to 191,796
_03103
BACOVA_03104: BACOVA_03104 - MATE efflux family protein, at 191,851 to 193,179
_03104
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 188.417 kb on + strand, within BACOVA_03101 at 188.417 kb on + strand, within BACOVA_03101 at 188.418 kb on - strand, within BACOVA_03101 at 188.504 kb on + strand, within BACOVA_03101 at 188.505 kb on - strand, within BACOVA_03101 at 188.516 kb on + strand, within BACOVA_03101 at 188.517 kb on - strand, within BACOVA_03101 at 188.556 kb on + strand, within BACOVA_03101 at 188.591 kb on + strand, within BACOVA_03101 at 188.665 kb on - strand, within BACOVA_03101 at 188.735 kb on + strand, within BACOVA_03101 at 188.735 kb on + strand, within BACOVA_03101 at 188.782 kb on + strand, within BACOVA_03101 at 188.796 kb on + strand, within BACOVA_03101 at 188.799 kb on + strand, within BACOVA_03101 at 188.801 kb on + strand, within BACOVA_03101 at 188.801 kb on + strand, within BACOVA_03101 at 188.802 kb on - strand, within BACOVA_03101 at 188.802 kb on - strand, within BACOVA_03101 at 188.829 kb on + strand, within BACOVA_03101 at 188.830 kb on - strand, within BACOVA_03101 at 188.848 kb on - strand, within BACOVA_03101 at 188.851 kb on + strand, within BACOVA_03101 at 188.876 kb on + strand, within BACOVA_03101 at 188.914 kb on - strand, within BACOVA_03101 at 188.914 kb on - strand, within BACOVA_03101 at 188.931 kb on - strand, within BACOVA_03101 at 188.937 kb on + strand, within BACOVA_03101 at 188.938 kb on - strand, within BACOVA_03101 at 188.938 kb on - strand, within BACOVA_03101 at 188.938 kb on - strand, within BACOVA_03101 at 188.938 kb on - strand, within BACOVA_03101 at 188.940 kb on + strand, within BACOVA_03101 at 188.941 kb on - strand, within BACOVA_03101 at 189.222 kb on - strand at 189.235 kb on + strand at 189.236 kb on - strand at 189.239 kb on + strand at 189.239 kb on + strand at 189.246 kb on + strand at 189.247 kb on - strand at 189.247 kb on - strand at 189.255 kb on + strand at 189.256 kb on - strand at 189.275 kb on + strand at 189.291 kb on - strand at 189.335 kb on + strand at 189.342 kb on - strand at 189.355 kb on - strand at 189.371 kb on + strand at 189.373 kb on + strand at 189.395 kb on - strand at 189.395 kb on - strand at 189.401 kb on + strand at 189.485 kb on - strand at 189.534 kb on + strand at 189.535 kb on - strand at 189.535 kb on - strand at 189.536 kb on + strand at 189.536 kb on + strand at 189.537 kb on - strand at 189.557 kb on + strand at 189.558 kb on - strand at 189.558 kb on - strand at 189.569 kb on + strand, within BACOVA_03102 at 189.602 kb on + strand, within BACOVA_03102 at 189.604 kb on + strand, within BACOVA_03102 at 189.604 kb on + strand, within BACOVA_03102 at 189.605 kb on - strand, within BACOVA_03102 at 189.605 kb on - strand, within BACOVA_03102 at 189.632 kb on + strand, within BACOVA_03102 at 189.656 kb on + strand, within BACOVA_03102 at 189.701 kb on + strand, within BACOVA_03102 at 189.702 kb on - strand, within BACOVA_03102 at 189.756 kb on - strand, within BACOVA_03102 at 189.766 kb on + strand, within BACOVA_03102 at 189.848 kb on + strand, within BACOVA_03102 at 189.858 kb on - strand, within BACOVA_03102 at 189.905 kb on + strand, within BACOVA_03102 at 189.906 kb on - strand, within BACOVA_03102 at 189.990 kb on - strand, within BACOVA_03102 at 190.068 kb on + strand, within BACOVA_03102 at 190.070 kb on + strand, within BACOVA_03102 at 190.070 kb on + strand, within BACOVA_03102 at 190.071 kb on - strand, within BACOVA_03102 at 190.116 kb on + strand, within BACOVA_03102 at 190.116 kb on + strand, within BACOVA_03102 at 190.173 kb on + strand, within BACOVA_03102 at 190.174 kb on - strand, within BACOVA_03102 at 190.212 kb on - strand, within BACOVA_03102 at 190.271 kb on + strand, within BACOVA_03102 at 190.290 kb on + strand, within BACOVA_03102 at 190.290 kb on + strand, within BACOVA_03102 at 190.291 kb on - strand, within BACOVA_03102 at 190.310 kb on + strand, within BACOVA_03102 at 190.310 kb on + strand, within BACOVA_03102 at 190.352 kb on + strand, within BACOVA_03102 at 190.388 kb on + strand, within BACOVA_03102 at 190.388 kb on + strand, within BACOVA_03102 at 190.418 kb on - strand, within BACOVA_03102 at 190.424 kb on + strand, within BACOVA_03102 at 190.424 kb on + strand, within BACOVA_03102 at 190.467 kb on + strand, within BACOVA_03102 at 190.512 kb on - strand, within BACOVA_03102 at 190.524 kb on + strand, within BACOVA_03102 at 190.524 kb on + strand, within BACOVA_03102 at 190.527 kb on + strand, within BACOVA_03102 at 190.527 kb on + strand, within BACOVA_03102 at 190.530 kb on - strand, within BACOVA_03102 at 190.530 kb on - strand, within BACOVA_03102 at 190.692 kb on + strand, within BACOVA_03102 at 190.762 kb on - strand at 190.802 kb on + strand at 190.805 kb on + strand at 190.806 kb on - strand at 190.806 kb on - strand at 190.815 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.827 kb on + strand at 190.896 kb on + strand at 190.904 kb on + strand at 190.905 kb on - strand at 190.908 kb on + strand at 190.908 kb on + strand at 190.908 kb on + strand at 190.927 kb on + strand at 190.928 kb on - strand at 190.928 kb on - strand at 190.929 kb on + strand at 190.933 kb on - strand at 190.987 kb on - strand at 191.024 kb on - strand at 191.035 kb on + strand at 191.036 kb on - strand at 191.043 kb on + strand at 191.043 kb on + strand at 191.044 kb on - strand at 191.048 kb on + strand at 191.879 kb on - strand at 191.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C) remove 188,417 + BACOVA_03101 0.34 -0.8 188,417 + BACOVA_03101 0.34 -0.1 188,418 - BACOVA_03101 0.34 +0.5 188,504 + BACOVA_03101 0.40 -0.9 188,505 - BACOVA_03101 0.40 -1.2 188,516 + BACOVA_03101 0.41 -0.8 188,517 - BACOVA_03101 0.41 +0.1 188,556 + BACOVA_03101 0.44 -0.1 188,591 + BACOVA_03101 0.47 +0.5 188,665 - BACOVA_03101 0.52 -0.2 188,735 + BACOVA_03101 0.57 -0.8 188,735 + BACOVA_03101 0.57 -0.4 188,782 + BACOVA_03101 0.60 -0.6 188,796 + BACOVA_03101 0.61 +3.8 188,799 + BACOVA_03101 0.61 -0.7 188,801 + BACOVA_03101 0.61 -0.2 188,801 + BACOVA_03101 0.61 -0.1 188,802 - BACOVA_03101 0.61 -0.3 188,802 - BACOVA_03101 0.61 -0.5 188,829 + BACOVA_03101 0.63 +0.6 188,830 - BACOVA_03101 0.63 -0.3 188,848 - BACOVA_03101 0.65 +0.5 188,851 + BACOVA_03101 0.65 -0.8 188,876 + BACOVA_03101 0.67 -0.2 188,914 - BACOVA_03101 0.69 +0.7 188,914 - BACOVA_03101 0.69 +0.2 188,931 - BACOVA_03101 0.71 -0.3 188,937 + BACOVA_03101 0.71 -0.3 188,938 - BACOVA_03101 0.71 +1.1 188,938 - BACOVA_03101 0.71 +0.2 188,938 - BACOVA_03101 0.71 -0.9 188,938 - BACOVA_03101 0.71 +0.6 188,940 + BACOVA_03101 0.71 +1.6 188,941 - BACOVA_03101 0.71 -1.1 189,222 - -1.4 189,235 + -0.8 189,236 - -0.1 189,239 + -0.4 189,239 + +0.2 189,246 + +0.0 189,247 - -1.1 189,247 - -0.1 189,255 + -0.7 189,256 - -0.4 189,275 + +0.8 189,291 - -0.3 189,335 + -1.3 189,342 - -0.7 189,355 - -0.5 189,371 + -1.7 189,373 + +0.8 189,395 - +0.8 189,395 - -1.3 189,401 + -0.4 189,485 - -0.8 189,534 + -0.3 189,535 - -0.3 189,535 - -0.4 189,536 + +1.2 189,536 + -1.3 189,537 - -0.3 189,557 + -0.2 189,558 - -1.4 189,558 - +0.2 189,569 + BACOVA_03102 0.11 -0.4 189,602 + BACOVA_03102 0.13 -1.1 189,604 + BACOVA_03102 0.13 -0.5 189,604 + BACOVA_03102 0.13 +0.6 189,605 - BACOVA_03102 0.13 +0.8 189,605 - BACOVA_03102 0.13 -2.0 189,632 + BACOVA_03102 0.15 -0.3 189,656 + BACOVA_03102 0.17 +0.8 189,701 + BACOVA_03102 0.19 -0.1 189,702 - BACOVA_03102 0.20 +1.1 189,756 - BACOVA_03102 0.23 -0.2 189,766 + BACOVA_03102 0.24 -1.1 189,848 + BACOVA_03102 0.29 -0.9 189,858 - BACOVA_03102 0.30 +0.9 189,905 + BACOVA_03102 0.33 +1.0 189,906 - BACOVA_03102 0.33 +0.4 189,990 - BACOVA_03102 0.39 -0.2 190,068 + BACOVA_03102 0.44 -0.1 190,070 + BACOVA_03102 0.44 -1.2 190,070 + BACOVA_03102 0.44 +0.7 190,071 - BACOVA_03102 0.44 +0.2 190,116 + BACOVA_03102 0.47 +0.7 190,116 + BACOVA_03102 0.47 +0.2 190,173 + BACOVA_03102 0.51 +0.8 190,174 - BACOVA_03102 0.51 +1.8 190,212 - BACOVA_03102 0.53 -0.0 190,271 + BACOVA_03102 0.57 +0.6 190,290 + BACOVA_03102 0.59 +0.4 190,290 + BACOVA_03102 0.59 +0.3 190,291 - BACOVA_03102 0.59 +0.2 190,310 + BACOVA_03102 0.60 +0.1 190,310 + BACOVA_03102 0.60 +0.2 190,352 + BACOVA_03102 0.63 +0.1 190,388 + BACOVA_03102 0.65 -0.2 190,388 + BACOVA_03102 0.65 -1.2 190,418 - BACOVA_03102 0.67 +0.3 190,424 + BACOVA_03102 0.68 +0.4 190,424 + BACOVA_03102 0.68 -0.3 190,467 + BACOVA_03102 0.70 -1.6 190,512 - BACOVA_03102 0.73 -0.1 190,524 + BACOVA_03102 0.74 +0.0 190,524 + BACOVA_03102 0.74 -0.9 190,527 + BACOVA_03102 0.74 +0.8 190,527 + BACOVA_03102 0.74 +0.2 190,530 - BACOVA_03102 0.75 +0.5 190,530 - BACOVA_03102 0.75 -0.9 190,692 + BACOVA_03102 0.85 -0.1 190,762 - -1.1 190,802 + -2.5 190,805 + -0.2 190,806 - -0.1 190,806 - +0.1 190,815 + +0.5 190,820 + -0.9 190,820 + -2.0 190,827 + -0.7 190,896 + -0.1 190,904 + +0.3 190,905 - -0.1 190,908 + +0.3 190,908 + +0.2 190,908 + -0.0 190,927 + -0.2 190,928 - +0.7 190,928 - -1.3 190,929 + -0.2 190,933 - -0.4 190,987 - +1.3 191,024 - -0.6 191,035 + -0.6 191,036 - +0.0 191,043 + -1.8 191,043 + +0.3 191,044 - +0.5 191,048 + -0.1 191,879 - -0.3 191,903 - +0.5
Or see this region's nucleotide sequence