Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03011

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03009 and BACOVA_03010 are separated by 36 nucleotidesBACOVA_03010 and BACOVA_03011 are separated by 143 nucleotidesBACOVA_03011 and BACOVA_03012 are separated by 232 nucleotidesBACOVA_03012 and BACOVA_03013 are separated by 32 nucleotides BACOVA_03009: BACOVA_03009 - hypothetical protein, at 81,865 to 83,010 _03009 BACOVA_03010: BACOVA_03010 - hypothetical protein, at 83,047 to 83,577 _03010 BACOVA_03011: BACOVA_03011 - transposase, IS4 family, at 83,721 to 84,914 _03011 BACOVA_03012: BACOVA_03012 - hypothetical protein, at 85,147 to 85,251 _03012 BACOVA_03013: BACOVA_03013 - IS66 family element, transposase, at 85,284 to 86,897 _03013 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 82.733 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.736 kb on + strand, within BACOVA_03009at 82.737 kb on - strand, within BACOVA_03009at 82.821 kb on + strand, within BACOVA_03009at 82.833 kb on + strand, within BACOVA_03009at 82.857 kb on + strand, within BACOVA_03009at 82.857 kb on + strand, within BACOVA_03009at 82.857 kb on + strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.858 kb on - strand, within BACOVA_03009at 82.862 kb on - strand, within BACOVA_03009at 82.875 kb on - strand, within BACOVA_03009at 82.932 kb on + strandat 82.932 kb on + strandat 82.932 kb on + strandat 82.932 kb on + strandat 82.933 kb on - strandat 82.933 kb on - strandat 82.936 kb on + strandat 82.936 kb on + strandat 82.936 kb on + strandat 82.965 kb on - strandat 82.977 kb on + strandat 82.977 kb on + strandat 82.978 kb on - strandat 82.979 kb on + strandat 82.979 kb on + strandat 82.980 kb on - strandat 82.980 kb on - strandat 83.087 kb on + strandat 83.087 kb on + strandat 83.122 kb on - strand, within BACOVA_03010at 83.140 kb on - strand, within BACOVA_03010at 83.142 kb on + strand, within BACOVA_03010at 83.205 kb on + strand, within BACOVA_03010at 83.274 kb on + strand, within BACOVA_03010at 83.291 kb on - strand, within BACOVA_03010at 83.321 kb on - strand, within BACOVA_03010at 83.406 kb on - strand, within BACOVA_03010at 83.422 kb on - strand, within BACOVA_03010at 83.422 kb on - strand, within BACOVA_03010at 83.436 kb on + strand, within BACOVA_03010at 83.437 kb on - strand, within BACOVA_03010at 83.451 kb on + strand, within BACOVA_03010at 83.451 kb on + strand, within BACOVA_03010at 83.451 kb on + strand, within BACOVA_03010at 83.452 kb on - strand, within BACOVA_03010at 83.453 kb on + strand, within BACOVA_03010at 83.453 kb on + strand, within BACOVA_03010at 83.454 kb on - strand, within BACOVA_03010at 83.454 kb on - strand, within BACOVA_03010at 83.465 kb on - strand, within BACOVA_03010at 83.495 kb on + strand, within BACOVA_03010at 83.514 kb on + strand, within BACOVA_03010at 83.566 kb on - strandat 83.576 kb on - strandat 83.576 kb on - strandat 83.584 kb on + strandat 83.594 kb on + strandat 83.612 kb on - strandat 83.618 kb on - strandat 83.618 kb on - strandat 83.644 kb on - strandat 83.644 kb on - strandat 83.648 kb on + strandat 83.649 kb on - strandat 83.649 kb on - strandat 83.689 kb on + strandat 83.690 kb on - strandat 83.695 kb on + strandat 83.696 kb on - strandat 83.696 kb on - strandat 83.698 kb on + strandat 83.734 kb on - strandat 85.042 kb on + strandat 85.060 kb on + strandat 85.071 kb on + strandat 85.071 kb on + strandat 85.149 kb on - strandat 85.149 kb on - strandat 85.167 kb on + strand, within BACOVA_03012at 85.167 kb on + strand, within BACOVA_03012at 85.167 kb on + strand, within BACOVA_03012at 85.168 kb on - strand, within BACOVA_03012at 85.168 kb on - strand, within BACOVA_03012at 85.178 kb on + strand, within BACOVA_03012at 85.178 kb on + strand, within BACOVA_03012at 85.207 kb on + strand, within BACOVA_03012at 85.223 kb on - strand, within BACOVA_03012at 85.227 kb on + strand, within BACOVA_03012at 85.227 kb on + strand, within BACOVA_03012at 85.227 kb on + strand, within BACOVA_03012at 85.228 kb on - strand, within BACOVA_03012at 85.269 kb on - strandat 85.272 kb on + strandat 85.299 kb on - strandat 85.319 kb on - strandat 85.355 kb on + strandat 85.377 kb on + strandat 85.378 kb on - strandat 85.378 kb on - strandat 85.394 kb on + strandat 85.429 kb on - strandat 85.500 kb on + strand, within BACOVA_03013at 85.579 kb on + strand, within BACOVA_03013at 85.579 kb on + strand, within BACOVA_03013at 85.579 kb on + strand, within BACOVA_03013at 85.579 kb on + strand, within BACOVA_03013at 85.583 kb on + strand, within BACOVA_03013at 85.583 kb on + strand, within BACOVA_03013at 85.583 kb on + strand, within BACOVA_03013at 85.584 kb on - strand, within BACOVA_03013at 85.585 kb on + strand, within BACOVA_03013at 85.586 kb on - strand, within BACOVA_03013at 85.591 kb on - strand, within BACOVA_03013at 85.622 kb on + strand, within BACOVA_03013at 85.623 kb on - strand, within BACOVA_03013at 85.631 kb on - strand, within BACOVA_03013at 85.667 kb on + strand, within BACOVA_03013at 85.667 kb on + strand, within BACOVA_03013at 85.667 kb on + strand, within BACOVA_03013at 85.668 kb on - strand, within BACOVA_03013at 85.672 kb on + strand, within BACOVA_03013at 85.695 kb on + strand, within BACOVA_03013at 85.696 kb on - strand, within BACOVA_03013at 85.747 kb on + strand, within BACOVA_03013at 85.748 kb on - strand, within BACOVA_03013at 85.748 kb on - strand, within BACOVA_03013at 85.879 kb on + strand, within BACOVA_03013at 85.902 kb on + strand, within BACOVA_03013

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
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82,733 + BACOVA_03009 0.76 -0.2
82,736 + BACOVA_03009 0.76 +0.7
82,736 + BACOVA_03009 0.76 -1.4
82,736 + BACOVA_03009 0.76 -0.1
82,736 + BACOVA_03009 0.76 -0.3
82,737 - BACOVA_03009 0.76 +0.7
82,821 + BACOVA_03009 0.83 -0.9
82,833 + BACOVA_03009 0.84 -1.1
82,857 + BACOVA_03009 0.87 -1.2
82,857 + BACOVA_03009 0.87 -1.5
82,857 + BACOVA_03009 0.87 -0.1
82,858 - BACOVA_03009 0.87 +1.2
82,858 - BACOVA_03009 0.87 +0.8
82,858 - BACOVA_03009 0.87 -1.4
82,858 - BACOVA_03009 0.87 -0.7
82,858 - BACOVA_03009 0.87 -0.0
82,858 - BACOVA_03009 0.87 +0.6
82,862 - BACOVA_03009 0.87 -0.7
82,875 - BACOVA_03009 0.88 -0.5
82,932 + +0.4
82,932 + -0.3
82,932 + +0.2
82,932 + -1.0
82,933 - -0.5
82,933 - -1.2
82,936 + +1.2
82,936 + -0.2
82,936 + -0.9
82,965 - +1.7
82,977 + -1.3
82,977 + +0.4
82,978 - -0.2
82,979 + -0.1
82,979 + -1.6
82,980 - +0.2
82,980 - +0.6
83,087 + -0.3
83,087 + -0.0
83,122 - BACOVA_03010 0.14 +0.5
83,140 - BACOVA_03010 0.18 +0.4
83,142 + BACOVA_03010 0.18 +0.6
83,205 + BACOVA_03010 0.30 +1.0
83,274 + BACOVA_03010 0.43 +1.0
83,291 - BACOVA_03010 0.46 -0.6
83,321 - BACOVA_03010 0.52 -1.1
83,406 - BACOVA_03010 0.68 +1.2
83,422 - BACOVA_03010 0.71 +0.1
83,422 - BACOVA_03010 0.71 +2.3
83,436 + BACOVA_03010 0.73 +0.0
83,437 - BACOVA_03010 0.73 -2.6
83,451 + BACOVA_03010 0.76 +0.6
83,451 + BACOVA_03010 0.76 -0.1
83,451 + BACOVA_03010 0.76 -0.2
83,452 - BACOVA_03010 0.76 -0.5
83,453 + BACOVA_03010 0.76 +0.2
83,453 + BACOVA_03010 0.76 -1.6
83,454 - BACOVA_03010 0.77 -1.2
83,454 - BACOVA_03010 0.77 -0.2
83,465 - BACOVA_03010 0.79 -0.3
83,495 + BACOVA_03010 0.84 +0.2
83,514 + BACOVA_03010 0.88 -0.1
83,566 - -0.8
83,576 - +0.4
83,576 - -0.8
83,584 + -0.1
83,594 + -0.4
83,612 - +1.4
83,618 - +1.4
83,618 - -1.4
83,644 - +0.4
83,644 - +0.8
83,648 + +0.2
83,649 - -0.2
83,649 - -0.4
83,689 + -0.3
83,690 - -0.0
83,695 + +1.6
83,696 - -0.7
83,696 - +0.6
83,698 + -0.2
83,734 - -0.7
85,042 + +0.1
85,060 + -0.8
85,071 + -0.5
85,071 + +1.6
85,149 - -1.1
85,149 - -0.6
85,167 + BACOVA_03012 0.19 -0.1
85,167 + BACOVA_03012 0.19 -2.6
85,167 + BACOVA_03012 0.19 +0.6
85,168 - BACOVA_03012 0.20 +0.2
85,168 - BACOVA_03012 0.20 +0.0
85,178 + BACOVA_03012 0.30 -0.4
85,178 + BACOVA_03012 0.30 -0.6
85,207 + BACOVA_03012 0.57 +0.0
85,223 - BACOVA_03012 0.72 -0.1
85,227 + BACOVA_03012 0.76 +0.1
85,227 + BACOVA_03012 0.76 +0.5
85,227 + BACOVA_03012 0.76 +0.7
85,228 - BACOVA_03012 0.77 +0.2
85,269 - -0.3
85,272 + +0.1
85,299 - -0.7
85,319 - +0.4
85,355 + +0.0
85,377 + +3.2
85,378 - -0.6
85,378 - +0.2
85,394 + +0.2
85,429 - +0.2
85,500 + BACOVA_03013 0.13 +1.5
85,579 + BACOVA_03013 0.18 +0.6
85,579 + BACOVA_03013 0.18 -3.6
85,579 + BACOVA_03013 0.18 +1.2
85,579 + BACOVA_03013 0.18 +0.4
85,583 + BACOVA_03013 0.19 -0.3
85,583 + BACOVA_03013 0.19 +0.6
85,583 + BACOVA_03013 0.19 +0.1
85,584 - BACOVA_03013 0.19 +1.2
85,585 + BACOVA_03013 0.19 +0.2
85,586 - BACOVA_03013 0.19 +0.3
85,591 - BACOVA_03013 0.19 -1.2
85,622 + BACOVA_03013 0.21 -0.5
85,623 - BACOVA_03013 0.21 +0.3
85,631 - BACOVA_03013 0.21 +0.7
85,667 + BACOVA_03013 0.24 -1.0
85,667 + BACOVA_03013 0.24 -0.0
85,667 + BACOVA_03013 0.24 -0.3
85,668 - BACOVA_03013 0.24 +0.9
85,672 + BACOVA_03013 0.24 +1.2
85,695 + BACOVA_03013 0.25 +0.4
85,696 - BACOVA_03013 0.26 +0.6
85,747 + BACOVA_03013 0.29 -1.2
85,748 - BACOVA_03013 0.29 -0.5
85,748 - BACOVA_03013 0.29 +1.2
85,879 + BACOVA_03013 0.37 +0.2
85,902 + BACOVA_03013 0.38 +2.2

Or see this region's nucleotide sequence