Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02793

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02792 and BACOVA_02793 are separated by 123 nucleotidesBACOVA_02793 and BACOVA_02794 are separated by 91 nucleotidesBACOVA_02794 and BACOVA_02795 are separated by 16 nucleotides BACOVA_02792: BACOVA_02792 - hypothetical protein, at 247,601 to 248,062 _02792 BACOVA_02793: BACOVA_02793 - hypothetical protein, at 248,186 to 248,374 _02793 BACOVA_02794: BACOVA_02794 - hypothetical protein, at 248,466 to 248,576 _02794 BACOVA_02795: BACOVA_02795 - glycosyl hydrolase family 2, sugar binding domain protein, at 248,593 to 250,803 _02795 Position (kb) 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 247.190 kb on + strandat 247.204 kb on + strandat 247.205 kb on - strandat 247.212 kb on + strandat 247.212 kb on + strandat 247.213 kb on - strandat 247.213 kb on - strandat 247.213 kb on - strandat 247.213 kb on - strandat 247.233 kb on + strandat 247.233 kb on + strandat 247.276 kb on - strandat 247.323 kb on + strandat 247.351 kb on + strandat 247.370 kb on + strandat 247.371 kb on - strandat 247.376 kb on + strandat 247.397 kb on + strandat 247.439 kb on - strandat 247.439 kb on - strandat 247.449 kb on - strandat 247.452 kb on + strandat 247.452 kb on + strandat 247.517 kb on + strandat 247.517 kb on + strandat 247.538 kb on + strandat 247.651 kb on + strand, within BACOVA_02792at 247.695 kb on - strand, within BACOVA_02792at 247.783 kb on + strand, within BACOVA_02792at 247.785 kb on + strand, within BACOVA_02792at 247.785 kb on + strand, within BACOVA_02792at 247.786 kb on - strand, within BACOVA_02792at 247.828 kb on - strand, within BACOVA_02792at 247.828 kb on - strand, within BACOVA_02792at 247.829 kb on + strand, within BACOVA_02792at 247.830 kb on - strand, within BACOVA_02792at 247.830 kb on - strand, within BACOVA_02792at 247.849 kb on + strand, within BACOVA_02792at 247.855 kb on + strand, within BACOVA_02792at 247.965 kb on + strand, within BACOVA_02792at 248.002 kb on + strand, within BACOVA_02792at 248.005 kb on - strand, within BACOVA_02792at 248.043 kb on - strandat 248.062 kb on + strandat 248.063 kb on - strandat 248.063 kb on - strandat 248.063 kb on - strandat 248.063 kb on - strandat 248.087 kb on - strandat 248.111 kb on + strandat 248.116 kb on + strandat 248.120 kb on - strandat 248.135 kb on + strandat 248.174 kb on + strandat 248.175 kb on - strandat 248.176 kb on + strandat 248.185 kb on - strandat 248.185 kb on - strandat 248.185 kb on - strandat 248.188 kb on - strandat 248.254 kb on + strand, within BACOVA_02793at 248.254 kb on + strand, within BACOVA_02793at 248.255 kb on - strand, within BACOVA_02793at 248.281 kb on + strand, within BACOVA_02793at 248.310 kb on + strand, within BACOVA_02793at 248.312 kb on + strand, within BACOVA_02793at 248.332 kb on + strand, within BACOVA_02793at 248.332 kb on + strand, within BACOVA_02793at 248.333 kb on - strand, within BACOVA_02793at 248.342 kb on + strand, within BACOVA_02793at 248.342 kb on + strand, within BACOVA_02793at 248.342 kb on + strand, within BACOVA_02793at 248.343 kb on - strand, within BACOVA_02793at 248.343 kb on - strand, within BACOVA_02793at 248.343 kb on - strand, within BACOVA_02793at 248.416 kb on + strandat 248.416 kb on + strandat 248.416 kb on + strandat 248.419 kb on + strandat 248.419 kb on + strandat 248.435 kb on + strandat 248.435 kb on + strandat 248.436 kb on - strandat 248.442 kb on + strandat 248.517 kb on + strand, within BACOVA_02794at 248.518 kb on - strand, within BACOVA_02794at 248.528 kb on + strand, within BACOVA_02794at 248.551 kb on - strand, within BACOVA_02794at 248.554 kb on + strand, within BACOVA_02794at 248.555 kb on - strand, within BACOVA_02794at 248.559 kb on + strand, within BACOVA_02794at 248.559 kb on + strand, within BACOVA_02794at 248.560 kb on - strand, within BACOVA_02794at 248.560 kb on - strand, within BACOVA_02794at 248.565 kb on - strand, within BACOVA_02794at 248.613 kb on - strandat 248.634 kb on + strandat 248.634 kb on + strandat 248.703 kb on - strandat 248.703 kb on - strandat 248.703 kb on - strandat 248.709 kb on + strandat 248.709 kb on + strandat 248.709 kb on + strandat 248.709 kb on + strandat 248.709 kb on + strandat 248.710 kb on - strandat 248.710 kb on - strandat 248.710 kb on - strandat 248.710 kb on - strandat 248.710 kb on - strandat 248.817 kb on + strand, within BACOVA_02795at 248.826 kb on + strand, within BACOVA_02795at 248.832 kb on + strand, within BACOVA_02795at 248.842 kb on + strand, within BACOVA_02795at 249.007 kb on + strand, within BACOVA_02795at 249.008 kb on - strand, within BACOVA_02795at 249.008 kb on - strand, within BACOVA_02795at 249.028 kb on - strand, within BACOVA_02795at 249.031 kb on + strand, within BACOVA_02795at 249.044 kb on + strand, within BACOVA_02795at 249.048 kb on + strand, within BACOVA_02795at 249.090 kb on + strand, within BACOVA_02795at 249.092 kb on + strand, within BACOVA_02795at 249.092 kb on + strand, within BACOVA_02795at 249.092 kb on + strand, within BACOVA_02795at 249.093 kb on - strand, within BACOVA_02795at 249.093 kb on - strand, within BACOVA_02795at 249.139 kb on + strand, within BACOVA_02795at 249.139 kb on + strand, within BACOVA_02795at 249.152 kb on + strand, within BACOVA_02795at 249.153 kb on - strand, within BACOVA_02795at 249.157 kb on - strand, within BACOVA_02795at 249.183 kb on + strand, within BACOVA_02795at 249.184 kb on - strand, within BACOVA_02795at 249.189 kb on + strand, within BACOVA_02795at 249.190 kb on - strand, within BACOVA_02795at 249.190 kb on - strand, within BACOVA_02795at 249.190 kb on - strand, within BACOVA_02795at 249.191 kb on + strand, within BACOVA_02795at 249.222 kb on + strand, within BACOVA_02795at 249.245 kb on + strand, within BACOVA_02795at 249.317 kb on + strand, within BACOVA_02795at 249.321 kb on + strand, within BACOVA_02795at 249.322 kb on - strand, within BACOVA_02795at 249.322 kb on - strand, within BACOVA_02795at 249.322 kb on - strand, within BACOVA_02795at 249.322 kb on - strand, within BACOVA_02795at 249.326 kb on - strand, within BACOVA_02795at 249.326 kb on - strand, within BACOVA_02795at 249.326 kb on - strand, within BACOVA_02795at 249.332 kb on + strand, within BACOVA_02795at 249.333 kb on - strand, within BACOVA_02795at 249.333 kb on - strand, within BACOVA_02795at 249.333 kb on - strand, within BACOVA_02795at 249.336 kb on + strand, within BACOVA_02795at 249.343 kb on + strand, within BACOVA_02795at 249.344 kb on - strand, within BACOVA_02795

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
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247,190 + -0.3
247,204 + -0.4
247,205 - +0.7
247,212 + -1.6
247,212 + -0.3
247,213 - -0.7
247,213 - +0.7
247,213 - +0.4
247,213 - +0.0
247,233 + -1.7
247,233 + +0.3
247,276 - +1.7
247,323 + -0.6
247,351 + +0.7
247,370 + +0.9
247,371 - -0.3
247,376 + +0.5
247,397 + +1.4
247,439 - +0.7
247,439 - +0.3
247,449 - -0.3
247,452 + -0.7
247,452 + +0.4
247,517 + +0.7
247,517 + -0.9
247,538 + +0.1
247,651 + BACOVA_02792 0.11 +0.3
247,695 - BACOVA_02792 0.20 +1.3
247,783 + BACOVA_02792 0.39 +0.3
247,785 + BACOVA_02792 0.40 -0.5
247,785 + BACOVA_02792 0.40 -1.3
247,786 - BACOVA_02792 0.40 -0.3
247,828 - BACOVA_02792 0.49 +0.3
247,828 - BACOVA_02792 0.49 -0.8
247,829 + BACOVA_02792 0.49 -0.3
247,830 - BACOVA_02792 0.50 -0.4
247,830 - BACOVA_02792 0.50 -2.6
247,849 + BACOVA_02792 0.54 -0.1
247,855 + BACOVA_02792 0.55 -0.2
247,965 + BACOVA_02792 0.79 -0.3
248,002 + BACOVA_02792 0.87 +1.4
248,005 - BACOVA_02792 0.87 +0.4
248,043 - +0.8
248,062 + -0.2
248,063 - +0.4
248,063 - +0.0
248,063 - +0.4
248,063 - -0.4
248,087 - +1.1
248,111 + +0.2
248,116 + -0.3
248,120 - +0.8
248,135 + -0.7
248,174 + +0.7
248,175 - -0.3
248,176 + -0.3
248,185 - +0.9
248,185 - -0.3
248,185 - +0.8
248,188 - +2.6
248,254 + BACOVA_02793 0.36 +0.3
248,254 + BACOVA_02793 0.36 -2.4
248,255 - BACOVA_02793 0.37 -0.0
248,281 + BACOVA_02793 0.50 +0.3
248,310 + BACOVA_02793 0.66 -0.3
248,312 + BACOVA_02793 0.67 -0.7
248,332 + BACOVA_02793 0.77 -0.4
248,332 + BACOVA_02793 0.77 -0.3
248,333 - BACOVA_02793 0.78 -1.1
248,342 + BACOVA_02793 0.83 +0.7
248,342 + BACOVA_02793 0.83 +0.5
248,342 + BACOVA_02793 0.83 +0.9
248,343 - BACOVA_02793 0.83 -0.0
248,343 - BACOVA_02793 0.83 +0.6
248,343 - BACOVA_02793 0.83 +1.1
248,416 + -0.8
248,416 + -0.8
248,416 + -0.5
248,419 + -2.1
248,419 + -0.2
248,435 + +0.3
248,435 + +0.0
248,436 - +1.0
248,442 + -0.7
248,517 + BACOVA_02794 0.46 +0.6
248,518 - BACOVA_02794 0.47 -0.6
248,528 + BACOVA_02794 0.56 -0.0
248,551 - BACOVA_02794 0.77 -1.2
248,554 + BACOVA_02794 0.79 -1.7
248,555 - BACOVA_02794 0.80 -2.1
248,559 + BACOVA_02794 0.84 -0.7
248,559 + BACOVA_02794 0.84 -0.5
248,560 - BACOVA_02794 0.85 +1.3
248,560 - BACOVA_02794 0.85 +0.2
248,565 - BACOVA_02794 0.89 -0.5
248,613 - +0.1
248,634 + -0.3
248,634 + +0.1
248,703 - -1.7
248,703 - -1.2
248,703 - -0.0
248,709 + -0.6
248,709 + -0.6
248,709 + -0.1
248,709 + +0.7
248,709 + -0.1
248,710 - -0.4
248,710 - -0.2
248,710 - +1.1
248,710 - +1.4
248,710 - -0.3
248,817 + BACOVA_02795 0.10 -0.6
248,826 + BACOVA_02795 0.11 +0.6
248,832 + BACOVA_02795 0.11 +0.8
248,842 + BACOVA_02795 0.11 +0.3
249,007 + BACOVA_02795 0.19 -1.0
249,008 - BACOVA_02795 0.19 -0.2
249,008 - BACOVA_02795 0.19 -0.5
249,028 - BACOVA_02795 0.20 +2.3
249,031 + BACOVA_02795 0.20 -0.6
249,044 + BACOVA_02795 0.20 -0.5
249,048 + BACOVA_02795 0.21 +1.3
249,090 + BACOVA_02795 0.22 +0.2
249,092 + BACOVA_02795 0.23 +1.7
249,092 + BACOVA_02795 0.23 -0.1
249,092 + BACOVA_02795 0.23 -0.9
249,093 - BACOVA_02795 0.23 -0.4
249,093 - BACOVA_02795 0.23 -0.4
249,139 + BACOVA_02795 0.25 +0.3
249,139 + BACOVA_02795 0.25 -0.4
249,152 + BACOVA_02795 0.25 +0.3
249,153 - BACOVA_02795 0.25 +0.8
249,157 - BACOVA_02795 0.26 +0.7
249,183 + BACOVA_02795 0.27 +0.2
249,184 - BACOVA_02795 0.27 +0.3
249,189 + BACOVA_02795 0.27 -0.6
249,190 - BACOVA_02795 0.27 +0.8
249,190 - BACOVA_02795 0.27 +2.3
249,190 - BACOVA_02795 0.27 -0.4
249,191 + BACOVA_02795 0.27 -0.1
249,222 + BACOVA_02795 0.28 -1.0
249,245 + BACOVA_02795 0.29 -0.7
249,317 + BACOVA_02795 0.33 +0.3
249,321 + BACOVA_02795 0.33 -1.3
249,322 - BACOVA_02795 0.33 -0.3
249,322 - BACOVA_02795 0.33 -0.0
249,322 - BACOVA_02795 0.33 +0.1
249,322 - BACOVA_02795 0.33 +0.0
249,326 - BACOVA_02795 0.33 +0.0
249,326 - BACOVA_02795 0.33 -0.3
249,326 - BACOVA_02795 0.33 -0.7
249,332 + BACOVA_02795 0.33 +0.3
249,333 - BACOVA_02795 0.33 +2.3
249,333 - BACOVA_02795 0.33 +0.5
249,333 - BACOVA_02795 0.33 -1.4
249,336 + BACOVA_02795 0.34 -0.1
249,343 + BACOVA_02795 0.34 +1.3
249,344 - BACOVA_02795 0.34 +1.3

Or see this region's nucleotide sequence