Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02466

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02464 and BACOVA_02465 are separated by 11 nucleotidesBACOVA_02465 and BACOVA_02466 are separated by 109 nucleotidesBACOVA_02466 and BACOVA_02467 are separated by 18 nucleotides BACOVA_02464: BACOVA_02464 - glycosyltransferase, group 1 family protein, at 226,956 to 228,092 _02464 BACOVA_02465: BACOVA_02465 - bacterial transferase hexapeptide repeat protein, at 228,104 to 228,652 _02465 BACOVA_02466: BACOVA_02466 - glycosyltransferase, group 1 family protein, at 228,762 to 229,883 _02466 BACOVA_02467: BACOVA_02467 - nitroreductase family protein, at 229,902 to 230,888 _02467 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2 3at 227.808 kb on - strand, within BACOVA_02464at 227.823 kb on - strand, within BACOVA_02464at 227.834 kb on - strand, within BACOVA_02464at 227.898 kb on - strand, within BACOVA_02464at 227.900 kb on - strand, within BACOVA_02464at 227.900 kb on - strand, within BACOVA_02464at 227.903 kb on - strand, within BACOVA_02464at 227.903 kb on - strand, within BACOVA_02464at 227.910 kb on - strand, within BACOVA_02464at 227.953 kb on - strand, within BACOVA_02464at 227.953 kb on - strand, within BACOVA_02464at 228.096 kb on - strandat 228.144 kb on - strandat 228.158 kb on - strandat 228.160 kb on - strand, within BACOVA_02465at 228.160 kb on - strand, within BACOVA_02465at 228.205 kb on - strand, within BACOVA_02465at 228.205 kb on - strand, within BACOVA_02465at 228.254 kb on + strand, within BACOVA_02465at 228.257 kb on - strand, within BACOVA_02465at 228.257 kb on - strand, within BACOVA_02465at 228.281 kb on - strand, within BACOVA_02465at 228.283 kb on - strand, within BACOVA_02465at 228.291 kb on - strand, within BACOVA_02465at 228.291 kb on - strand, within BACOVA_02465at 228.291 kb on - strand, within BACOVA_02465at 228.335 kb on - strand, within BACOVA_02465at 228.337 kb on - strand, within BACOVA_02465at 228.350 kb on - strand, within BACOVA_02465at 228.380 kb on - strand, within BACOVA_02465at 228.440 kb on - strand, within BACOVA_02465at 228.450 kb on - strand, within BACOVA_02465at 228.481 kb on - strand, within BACOVA_02465at 228.481 kb on - strand, within BACOVA_02465at 228.496 kb on - strand, within BACOVA_02465at 228.496 kb on - strand, within BACOVA_02465at 228.496 kb on - strand, within BACOVA_02465at 228.552 kb on - strand, within BACOVA_02465at 228.612 kb on - strandat 228.612 kb on - strandat 228.619 kb on + strandat 228.620 kb on - strandat 228.621 kb on + strandat 228.640 kb on - strandat 228.646 kb on - strandat 228.670 kb on + strandat 228.690 kb on + strandat 228.690 kb on + strandat 228.692 kb on + strandat 228.693 kb on - strandat 228.694 kb on + strandat 228.695 kb on - strandat 228.696 kb on + strandat 228.712 kb on + strandat 228.727 kb on + strandat 228.728 kb on - strandat 228.831 kb on - strandat 228.888 kb on - strand, within BACOVA_02466at 228.888 kb on - strand, within BACOVA_02466at 228.969 kb on - strand, within BACOVA_02466at 228.969 kb on - strand, within BACOVA_02466at 228.984 kb on - strand, within BACOVA_02466at 228.990 kb on - strand, within BACOVA_02466at 229.004 kb on - strand, within BACOVA_02466at 229.020 kb on - strand, within BACOVA_02466at 229.047 kb on + strand, within BACOVA_02466at 229.059 kb on - strand, within BACOVA_02466at 229.059 kb on - strand, within BACOVA_02466at 229.062 kb on - strand, within BACOVA_02466at 229.066 kb on - strand, within BACOVA_02466at 229.066 kb on - strand, within BACOVA_02466at 229.114 kb on - strand, within BACOVA_02466at 229.114 kb on - strand, within BACOVA_02466at 229.116 kb on - strand, within BACOVA_02466at 229.148 kb on - strand, within BACOVA_02466at 229.152 kb on - strand, within BACOVA_02466at 229.154 kb on - strand, within BACOVA_02466at 229.161 kb on - strand, within BACOVA_02466at 229.176 kb on - strand, within BACOVA_02466at 229.185 kb on - strand, within BACOVA_02466at 229.185 kb on - strand, within BACOVA_02466at 229.218 kb on - strand, within BACOVA_02466at 229.218 kb on - strand, within BACOVA_02466at 229.227 kb on - strand, within BACOVA_02466at 229.289 kb on - strand, within BACOVA_02466at 229.314 kb on - strand, within BACOVA_02466at 229.338 kb on - strand, within BACOVA_02466at 229.338 kb on - strand, within BACOVA_02466at 229.362 kb on - strand, within BACOVA_02466at 229.368 kb on - strand, within BACOVA_02466at 229.368 kb on - strand, within BACOVA_02466at 229.412 kb on - strand, within BACOVA_02466at 229.412 kb on - strand, within BACOVA_02466at 229.457 kb on + strand, within BACOVA_02466at 229.458 kb on - strand, within BACOVA_02466at 229.464 kb on - strand, within BACOVA_02466at 229.515 kb on - strand, within BACOVA_02466at 229.517 kb on - strand, within BACOVA_02466at 229.536 kb on - strand, within BACOVA_02466at 229.555 kb on + strand, within BACOVA_02466at 229.556 kb on - strand, within BACOVA_02466at 229.556 kb on - strand, within BACOVA_02466at 229.595 kb on - strand, within BACOVA_02466at 229.629 kb on - strand, within BACOVA_02466at 229.647 kb on - strand, within BACOVA_02466at 229.661 kb on - strand, within BACOVA_02466at 229.749 kb on - strand, within BACOVA_02466at 229.761 kb on - strand, within BACOVA_02466at 229.761 kb on - strand, within BACOVA_02466at 229.761 kb on - strand, within BACOVA_02466at 229.765 kb on - strand, within BACOVA_02466at 229.765 kb on - strand, within BACOVA_02466at 229.779 kb on - strandat 229.779 kb on - strandat 229.782 kb on - strandat 229.849 kb on - strandat 229.849 kb on - strandat 229.871 kb on - strandat 229.882 kb on - strandat 229.925 kb on + strandat 229.926 kb on - strandat 229.929 kb on - strandat 229.929 kb on - strandat 229.929 kb on - strandat 229.948 kb on + strandat 229.949 kb on - strandat 229.949 kb on - strandat 229.961 kb on + strandat 229.961 kb on + strandat 229.961 kb on + strandat 229.961 kb on + strandat 229.966 kb on - strandat 230.030 kb on + strand, within BACOVA_02467at 230.031 kb on - strand, within BACOVA_02467at 230.031 kb on - strand, within BACOVA_02467at 230.033 kb on - strand, within BACOVA_02467at 230.035 kb on - strand, within BACOVA_02467at 230.035 kb on - strand, within BACOVA_02467at 230.036 kb on + strand, within BACOVA_02467at 230.036 kb on + strand, within BACOVA_02467at 230.066 kb on - strand, within BACOVA_02467at 230.066 kb on - strand, within BACOVA_02467at 230.066 kb on - strand, within BACOVA_02467at 230.228 kb on + strand, within BACOVA_02467at 230.237 kb on + strand, within BACOVA_02467at 230.249 kb on + strand, within BACOVA_02467at 230.259 kb on - strand, within BACOVA_02467at 230.266 kb on + strand, within BACOVA_02467at 230.292 kb on + strand, within BACOVA_02467at 230.293 kb on - strand, within BACOVA_02467at 230.293 kb on - strand, within BACOVA_02467at 230.300 kb on - strand, within BACOVA_02467at 230.326 kb on - strand, within BACOVA_02467at 230.333 kb on + strand, within BACOVA_02467at 230.338 kb on + strand, within BACOVA_02467at 230.339 kb on - strand, within BACOVA_02467at 230.339 kb on - strand, within BACOVA_02467at 230.355 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.430 kb on - strand, within BACOVA_02467at 230.430 kb on - strand, within BACOVA_02467at 230.430 kb on - strand, within BACOVA_02467at 230.431 kb on + strand, within BACOVA_02467at 230.452 kb on + strand, within BACOVA_02467at 230.484 kb on - strand, within BACOVA_02467at 230.487 kb on - strand, within BACOVA_02467at 230.549 kb on - strand, within BACOVA_02467at 230.549 kb on - strand, within BACOVA_02467at 230.598 kb on - strand, within BACOVA_02467at 230.598 kb on - strand, within BACOVA_02467at 230.599 kb on + strand, within BACOVA_02467at 230.600 kb on - strand, within BACOVA_02467at 230.620 kb on - strand, within BACOVA_02467at 230.695 kb on - strand, within BACOVA_02467at 230.709 kb on - strand, within BACOVA_02467at 230.709 kb on - strand, within BACOVA_02467at 230.772 kb on - strand, within BACOVA_02467at 230.820 kb on - strandat 230.854 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
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227,808 - BACOVA_02464 0.75 +1.1
227,823 - BACOVA_02464 0.76 +1.2
227,834 - BACOVA_02464 0.77 -0.1
227,898 - BACOVA_02464 0.83 +1.9
227,900 - BACOVA_02464 0.83 +2.9
227,900 - BACOVA_02464 0.83 -0.6
227,903 - BACOVA_02464 0.83 -1.0
227,903 - BACOVA_02464 0.83 +1.1
227,910 - BACOVA_02464 0.84 +1.6
227,953 - BACOVA_02464 0.88 +2.1
227,953 - BACOVA_02464 0.88 +1.3
228,096 - +0.5
228,144 - +0.4
228,158 - +1.4
228,160 - BACOVA_02465 0.10 +1.1
228,160 - BACOVA_02465 0.10 +0.6
228,205 - BACOVA_02465 0.18 +1.9
228,205 - BACOVA_02465 0.18 -0.3
228,254 + BACOVA_02465 0.27 +2.5
228,257 - BACOVA_02465 0.28 +1.9
228,257 - BACOVA_02465 0.28 +0.9
228,281 - BACOVA_02465 0.32 +0.9
228,283 - BACOVA_02465 0.33 +1.5
228,291 - BACOVA_02465 0.34 +1.7
228,291 - BACOVA_02465 0.34 +0.9
228,291 - BACOVA_02465 0.34 +0.7
228,335 - BACOVA_02465 0.42 +1.5
228,337 - BACOVA_02465 0.42 +1.4
228,350 - BACOVA_02465 0.45 -1.4
228,380 - BACOVA_02465 0.50 +0.5
228,440 - BACOVA_02465 0.61 +2.5
228,450 - BACOVA_02465 0.63 +1.3
228,481 - BACOVA_02465 0.69 -2.2
228,481 - BACOVA_02465 0.69 -0.5
228,496 - BACOVA_02465 0.71 +0.1
228,496 - BACOVA_02465 0.71 -0.2
228,496 - BACOVA_02465 0.71 -0.4
228,552 - BACOVA_02465 0.82 +1.7
228,612 - +0.9
228,612 - +1.8
228,619 + +0.9
228,620 - +1.6
228,621 + +0.9
228,640 - +1.9
228,646 - +0.2
228,670 + -2.2
228,690 + +0.5
228,690 + +0.4
228,692 + +0.1
228,693 - +1.7
228,694 + +0.4
228,695 - -0.4
228,696 + +0.7
228,712 + -2.1
228,727 + +0.9
228,728 - +0.4
228,831 - -0.2
228,888 - BACOVA_02466 0.11 +0.5
228,888 - BACOVA_02466 0.11 -1.8
228,969 - BACOVA_02466 0.18 +0.6
228,969 - BACOVA_02466 0.18 +1.1
228,984 - BACOVA_02466 0.20 +1.4
228,990 - BACOVA_02466 0.20 +1.1
229,004 - BACOVA_02466 0.22 +0.8
229,020 - BACOVA_02466 0.23 +1.3
229,047 + BACOVA_02466 0.25 +2.5
229,059 - BACOVA_02466 0.26 +3.5
229,059 - BACOVA_02466 0.26 +0.4
229,062 - BACOVA_02466 0.27 +1.6
229,066 - BACOVA_02466 0.27 +0.6
229,066 - BACOVA_02466 0.27 +0.6
229,114 - BACOVA_02466 0.31 +0.9
229,114 - BACOVA_02466 0.31 +1.6
229,116 - BACOVA_02466 0.32 +2.4
229,148 - BACOVA_02466 0.34 -0.2
229,152 - BACOVA_02466 0.35 -0.7
229,154 - BACOVA_02466 0.35 -0.3
229,161 - BACOVA_02466 0.36 +1.3
229,176 - BACOVA_02466 0.37 +0.6
229,185 - BACOVA_02466 0.38 +0.9
229,185 - BACOVA_02466 0.38 +0.9
229,218 - BACOVA_02466 0.41 -0.5
229,218 - BACOVA_02466 0.41 +0.9
229,227 - BACOVA_02466 0.41 +1.9
229,289 - BACOVA_02466 0.47 +0.8
229,314 - BACOVA_02466 0.49 +1.3
229,338 - BACOVA_02466 0.51 -0.9
229,338 - BACOVA_02466 0.51 -0.1
229,362 - BACOVA_02466 0.53 +1.1
229,368 - BACOVA_02466 0.54 -1.9
229,368 - BACOVA_02466 0.54 +1.7
229,412 - BACOVA_02466 0.58 +0.9
229,412 - BACOVA_02466 0.58 +1.5
229,457 + BACOVA_02466 0.62 +3.2
229,458 - BACOVA_02466 0.62 +0.9
229,464 - BACOVA_02466 0.63 +0.5
229,515 - BACOVA_02466 0.67 +0.4
229,517 - BACOVA_02466 0.67 +1.0
229,536 - BACOVA_02466 0.69 -0.8
229,555 + BACOVA_02466 0.71 +1.9
229,556 - BACOVA_02466 0.71 +1.5
229,556 - BACOVA_02466 0.71 -0.3
229,595 - BACOVA_02466 0.74 -0.1
229,629 - BACOVA_02466 0.77 +2.0
229,647 - BACOVA_02466 0.79 -0.5
229,661 - BACOVA_02466 0.80 +0.9
229,749 - BACOVA_02466 0.88 +1.7
229,761 - BACOVA_02466 0.89 -0.6
229,761 - BACOVA_02466 0.89 +0.1
229,761 - BACOVA_02466 0.89 +0.4
229,765 - BACOVA_02466 0.89 +0.2
229,765 - BACOVA_02466 0.89 -1.0
229,779 - -0.2
229,779 - +1.2
229,782 - +0.9
229,849 - +0.5
229,849 - +0.8
229,871 - -0.2
229,882 - +0.9
229,925 + -1.1
229,926 - +0.9
229,929 - +1.4
229,929 - +0.3
229,929 - +0.7
229,948 + +0.5
229,949 - -0.1
229,949 - +0.5
229,961 + -1.1
229,961 + +0.9
229,961 + +0.9
229,961 + +0.5
229,966 - -1.4
230,030 + BACOVA_02467 0.13 -1.6
230,031 - BACOVA_02467 0.13 +0.6
230,031 - BACOVA_02467 0.13 +0.6
230,033 - BACOVA_02467 0.13 -1.0
230,035 - BACOVA_02467 0.13 +1.3
230,035 - BACOVA_02467 0.13 +0.4
230,036 + BACOVA_02467 0.14 +0.6
230,036 + BACOVA_02467 0.14 -0.2
230,066 - BACOVA_02467 0.17 +1.6
230,066 - BACOVA_02467 0.17 -0.1
230,066 - BACOVA_02467 0.17 +0.7
230,228 + BACOVA_02467 0.33 -0.1
230,237 + BACOVA_02467 0.34 -0.6
230,249 + BACOVA_02467 0.35 -0.1
230,259 - BACOVA_02467 0.36 +0.4
230,266 + BACOVA_02467 0.37 -0.6
230,292 + BACOVA_02467 0.40 +1.9
230,293 - BACOVA_02467 0.40 +0.5
230,293 - BACOVA_02467 0.40 +1.5
230,300 - BACOVA_02467 0.40 -0.4
230,326 - BACOVA_02467 0.43 -1.6
230,333 + BACOVA_02467 0.44 -0.1
230,338 + BACOVA_02467 0.44 +0.4
230,339 - BACOVA_02467 0.44 +0.4
230,339 - BACOVA_02467 0.44 +1.7
230,355 - BACOVA_02467 0.46 -1.6
230,426 - BACOVA_02467 0.53 +1.6
230,426 - BACOVA_02467 0.53 -0.3
230,426 - BACOVA_02467 0.53 +0.6
230,426 - BACOVA_02467 0.53 +0.6
230,430 - BACOVA_02467 0.53 +0.5
230,430 - BACOVA_02467 0.53 +0.9
230,430 - BACOVA_02467 0.53 -0.3
230,431 + BACOVA_02467 0.54 +0.9
230,452 + BACOVA_02467 0.56 -0.1
230,484 - BACOVA_02467 0.59 -0.6
230,487 - BACOVA_02467 0.59 -1.4
230,549 - BACOVA_02467 0.66 -1.5
230,549 - BACOVA_02467 0.66 -0.1
230,598 - BACOVA_02467 0.71 +0.3
230,598 - BACOVA_02467 0.71 -2.2
230,599 + BACOVA_02467 0.71 +0.6
230,600 - BACOVA_02467 0.71 +1.3
230,620 - BACOVA_02467 0.73 +2.5
230,695 - BACOVA_02467 0.80 -0.1
230,709 - BACOVA_02467 0.82 +2.8
230,709 - BACOVA_02467 0.82 -1.4
230,772 - BACOVA_02467 0.88 +1.4
230,820 - +0.7
230,854 - +1.5

Or see this region's nucleotide sequence