Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02463

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02462 and BACOVA_02463 overlap by 26 nucleotidesBACOVA_02463 and BACOVA_02464 are separated by 3 nucleotides BACOVA_02462: BACOVA_02462 - hypothetical protein, at 224,561 to 225,760 _02462 BACOVA_02463: BACOVA_02463 - glycosyltransferase, group 1 family protein, at 225,735 to 226,952 _02463 BACOVA_02464: BACOVA_02464 - glycosyltransferase, group 1 family protein, at 226,956 to 228,092 _02464 Position (kb) 225 226 227Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 224.756 kb on - strand, within BACOVA_02462at 224.767 kb on - strand, within BACOVA_02462at 224.787 kb on - strand, within BACOVA_02462at 224.787 kb on - strand, within BACOVA_02462at 224.787 kb on - strand, within BACOVA_02462at 224.792 kb on - strand, within BACOVA_02462at 224.826 kb on - strand, within BACOVA_02462at 224.827 kb on + strand, within BACOVA_02462at 224.830 kb on + strand, within BACOVA_02462at 224.831 kb on - strand, within BACOVA_02462at 224.833 kb on - strand, within BACOVA_02462at 224.840 kb on - strand, within BACOVA_02462at 224.870 kb on + strand, within BACOVA_02462at 224.882 kb on - strand, within BACOVA_02462at 224.941 kb on - strand, within BACOVA_02462at 224.941 kb on - strand, within BACOVA_02462at 224.976 kb on + strand, within BACOVA_02462at 224.981 kb on - strand, within BACOVA_02462at 225.005 kb on - strand, within BACOVA_02462at 225.007 kb on - strand, within BACOVA_02462at 225.007 kb on - strand, within BACOVA_02462at 225.007 kb on - strand, within BACOVA_02462at 225.063 kb on - strand, within BACOVA_02462at 225.105 kb on - strand, within BACOVA_02462at 225.107 kb on - strand, within BACOVA_02462at 225.107 kb on - strand, within BACOVA_02462at 225.137 kb on - strand, within BACOVA_02462at 225.193 kb on - strand, within BACOVA_02462at 225.202 kb on - strand, within BACOVA_02462at 225.202 kb on - strand, within BACOVA_02462at 225.263 kb on + strand, within BACOVA_02462at 225.264 kb on - strand, within BACOVA_02462at 225.347 kb on - strand, within BACOVA_02462at 225.353 kb on + strand, within BACOVA_02462at 225.356 kb on - strand, within BACOVA_02462at 225.358 kb on + strand, within BACOVA_02462at 225.359 kb on - strand, within BACOVA_02462at 225.363 kb on - strand, within BACOVA_02462at 225.396 kb on - strand, within BACOVA_02462at 225.433 kb on - strand, within BACOVA_02462at 225.504 kb on - strand, within BACOVA_02462at 225.504 kb on - strand, within BACOVA_02462at 225.527 kb on - strand, within BACOVA_02462at 225.527 kb on - strand, within BACOVA_02462at 225.544 kb on - strand, within BACOVA_02462at 225.565 kb on - strand, within BACOVA_02462at 225.577 kb on - strand, within BACOVA_02462at 225.636 kb on - strand, within BACOVA_02462at 225.709 kb on - strandat 225.709 kb on - strandat 225.711 kb on - strandat 225.726 kb on + strandat 225.726 kb on + strandat 225.727 kb on - strandat 225.770 kb on - strandat 225.800 kb on - strandat 225.870 kb on - strand, within BACOVA_02463at 225.870 kb on - strand, within BACOVA_02463at 225.876 kb on - strand, within BACOVA_02463at 225.876 kb on - strand, within BACOVA_02463at 225.909 kb on - strand, within BACOVA_02463at 225.909 kb on - strand, within BACOVA_02463at 225.909 kb on - strand, within BACOVA_02463at 225.909 kb on - strand, within BACOVA_02463at 225.909 kb on - strand, within BACOVA_02463at 225.913 kb on - strand, within BACOVA_02463at 225.913 kb on - strand, within BACOVA_02463at 225.915 kb on - strand, within BACOVA_02463at 225.933 kb on - strand, within BACOVA_02463at 225.989 kb on + strand, within BACOVA_02463at 226.024 kb on - strand, within BACOVA_02463at 226.158 kb on - strand, within BACOVA_02463at 226.163 kb on - strand, within BACOVA_02463at 226.230 kb on - strand, within BACOVA_02463at 226.239 kb on - strand, within BACOVA_02463at 226.241 kb on - strand, within BACOVA_02463at 226.241 kb on - strand, within BACOVA_02463at 226.298 kb on - strand, within BACOVA_02463at 226.300 kb on - strand, within BACOVA_02463at 226.331 kb on - strand, within BACOVA_02463at 226.338 kb on - strand, within BACOVA_02463at 226.372 kb on + strand, within BACOVA_02463at 226.373 kb on - strand, within BACOVA_02463at 226.436 kb on - strand, within BACOVA_02463at 226.436 kb on - strand, within BACOVA_02463at 226.528 kb on - strand, within BACOVA_02463at 226.528 kb on - strand, within BACOVA_02463at 226.528 kb on - strand, within BACOVA_02463at 226.560 kb on - strand, within BACOVA_02463at 226.686 kb on - strand, within BACOVA_02463at 226.830 kb on - strand, within BACOVA_02463at 226.834 kb on - strandat 226.953 kb on + strandat 226.956 kb on - strandat 226.971 kb on - strandat 226.971 kb on - strandat 226.973 kb on - strandat 227.023 kb on - strandat 227.023 kb on - strandat 227.059 kb on - strandat 227.059 kb on - strandat 227.061 kb on - strandat 227.073 kb on - strand, within BACOVA_02464at 227.095 kb on - strand, within BACOVA_02464at 227.095 kb on - strand, within BACOVA_02464at 227.130 kb on - strand, within BACOVA_02464at 227.137 kb on - strand, within BACOVA_02464at 227.180 kb on - strand, within BACOVA_02464at 227.198 kb on - strand, within BACOVA_02464at 227.198 kb on - strand, within BACOVA_02464at 227.282 kb on - strand, within BACOVA_02464at 227.292 kb on - strand, within BACOVA_02464at 227.308 kb on - strand, within BACOVA_02464at 227.392 kb on - strand, within BACOVA_02464at 227.435 kb on - strand, within BACOVA_02464at 227.435 kb on - strand, within BACOVA_02464at 227.499 kb on - strand, within BACOVA_02464at 227.499 kb on - strand, within BACOVA_02464at 227.501 kb on - strand, within BACOVA_02464at 227.501 kb on - strand, within BACOVA_02464at 227.501 kb on - strand, within BACOVA_02464at 227.539 kb on - strand, within BACOVA_02464at 227.578 kb on - strand, within BACOVA_02464at 227.578 kb on - strand, within BACOVA_02464at 227.578 kb on - strand, within BACOVA_02464at 227.578 kb on - strand, within BACOVA_02464at 227.704 kb on - strand, within BACOVA_02464at 227.808 kb on - strand, within BACOVA_02464at 227.823 kb on - strand, within BACOVA_02464at 227.834 kb on - strand, within BACOVA_02464at 227.898 kb on - strand, within BACOVA_02464at 227.900 kb on - strand, within BACOVA_02464at 227.900 kb on - strand, within BACOVA_02464at 227.903 kb on - strand, within BACOVA_02464at 227.903 kb on - strand, within BACOVA_02464at 227.910 kb on - strand, within BACOVA_02464

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
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224,756 - BACOVA_02462 0.16 +0.4
224,767 - BACOVA_02462 0.17 +0.4
224,787 - BACOVA_02462 0.19 +1.3
224,787 - BACOVA_02462 0.19 +2.3
224,787 - BACOVA_02462 0.19 +0.9
224,792 - BACOVA_02462 0.19 +0.9
224,826 - BACOVA_02462 0.22 -2.1
224,827 + BACOVA_02462 0.22 +1.4
224,830 + BACOVA_02462 0.22 +0.9
224,831 - BACOVA_02462 0.23 -0.9
224,833 - BACOVA_02462 0.23 +0.5
224,840 - BACOVA_02462 0.23 +1.9
224,870 + BACOVA_02462 0.26 -0.1
224,882 - BACOVA_02462 0.27 +1.4
224,941 - BACOVA_02462 0.32 -0.5
224,941 - BACOVA_02462 0.32 +0.8
224,976 + BACOVA_02462 0.35 -1.6
224,981 - BACOVA_02462 0.35 +2.5
225,005 - BACOVA_02462 0.37 +0.4
225,007 - BACOVA_02462 0.37 -0.5
225,007 - BACOVA_02462 0.37 +0.5
225,007 - BACOVA_02462 0.37 +0.7
225,063 - BACOVA_02462 0.42 +1.9
225,105 - BACOVA_02462 0.45 -1.3
225,107 - BACOVA_02462 0.46 +1.2
225,107 - BACOVA_02462 0.46 +1.9
225,137 - BACOVA_02462 0.48 +0.2
225,193 - BACOVA_02462 0.53 -0.1
225,202 - BACOVA_02462 0.53 +2.7
225,202 - BACOVA_02462 0.53 +0.5
225,263 + BACOVA_02462 0.58 +0.4
225,264 - BACOVA_02462 0.59 +0.0
225,347 - BACOVA_02462 0.66 +1.9
225,353 + BACOVA_02462 0.66 +0.5
225,356 - BACOVA_02462 0.66 -0.2
225,358 + BACOVA_02462 0.66 +1.3
225,359 - BACOVA_02462 0.67 +1.6
225,363 - BACOVA_02462 0.67 +1.7
225,396 - BACOVA_02462 0.70 +1.4
225,433 - BACOVA_02462 0.73 +1.3
225,504 - BACOVA_02462 0.79 -0.2
225,504 - BACOVA_02462 0.79 +0.1
225,527 - BACOVA_02462 0.81 +0.5
225,527 - BACOVA_02462 0.81 -0.1
225,544 - BACOVA_02462 0.82 +1.8
225,565 - BACOVA_02462 0.84 -0.1
225,577 - BACOVA_02462 0.85 +2.1
225,636 - BACOVA_02462 0.90 -0.8
225,709 - +1.5
225,709 - +1.8
225,711 - -0.3
225,726 + +0.1
225,726 + -0.9
225,727 - +0.9
225,770 - +1.9
225,800 - +1.2
225,870 - BACOVA_02463 0.11 +0.1
225,870 - BACOVA_02463 0.11 -0.2
225,876 - BACOVA_02463 0.12 -0.6
225,876 - BACOVA_02463 0.12 +1.8
225,909 - BACOVA_02463 0.14 -0.5
225,909 - BACOVA_02463 0.14 +0.8
225,909 - BACOVA_02463 0.14 -1.1
225,909 - BACOVA_02463 0.14 +0.7
225,909 - BACOVA_02463 0.14 -3.8
225,913 - BACOVA_02463 0.15 -1.9
225,913 - BACOVA_02463 0.15 +0.2
225,915 - BACOVA_02463 0.15 -1.1
225,933 - BACOVA_02463 0.16 +1.3
225,989 + BACOVA_02463 0.21 -0.1
226,024 - BACOVA_02463 0.24 +0.2
226,158 - BACOVA_02463 0.35 +1.5
226,163 - BACOVA_02463 0.35 -0.5
226,230 - BACOVA_02463 0.41 -1.6
226,239 - BACOVA_02463 0.41 +1.2
226,241 - BACOVA_02463 0.42 +1.5
226,241 - BACOVA_02463 0.42 +0.1
226,298 - BACOVA_02463 0.46 +1.0
226,300 - BACOVA_02463 0.46 +0.3
226,331 - BACOVA_02463 0.49 +2.2
226,338 - BACOVA_02463 0.50 +0.4
226,372 + BACOVA_02463 0.52 +1.5
226,373 - BACOVA_02463 0.52 +0.6
226,436 - BACOVA_02463 0.58 +2.5
226,436 - BACOVA_02463 0.58 +0.4
226,528 - BACOVA_02463 0.65 -0.2
226,528 - BACOVA_02463 0.65 -0.4
226,528 - BACOVA_02463 0.65 +0.9
226,560 - BACOVA_02463 0.68 +0.2
226,686 - BACOVA_02463 0.78 +0.6
226,830 - BACOVA_02463 0.90 +0.7
226,834 - -1.4
226,953 + +1.3
226,956 - -2.1
226,971 - +0.9
226,971 - +0.4
226,973 - -1.1
227,023 - +1.1
227,023 - +0.2
227,059 - +1.5
227,059 - +1.5
227,061 - -0.3
227,073 - BACOVA_02464 0.10 -0.1
227,095 - BACOVA_02464 0.12 +1.4
227,095 - BACOVA_02464 0.12 -0.9
227,130 - BACOVA_02464 0.15 +0.8
227,137 - BACOVA_02464 0.16 +1.5
227,180 - BACOVA_02464 0.20 -0.4
227,198 - BACOVA_02464 0.21 +0.4
227,198 - BACOVA_02464 0.21 +1.9
227,282 - BACOVA_02464 0.29 +1.4
227,292 - BACOVA_02464 0.30 +1.1
227,308 - BACOVA_02464 0.31 -0.1
227,392 - BACOVA_02464 0.38 +2.7
227,435 - BACOVA_02464 0.42 -0.6
227,435 - BACOVA_02464 0.42 -0.1
227,499 - BACOVA_02464 0.48 -0.1
227,499 - BACOVA_02464 0.48 -0.7
227,501 - BACOVA_02464 0.48 +1.3
227,501 - BACOVA_02464 0.48 -0.9
227,501 - BACOVA_02464 0.48 +0.8
227,539 - BACOVA_02464 0.51 +0.6
227,578 - BACOVA_02464 0.55 -0.1
227,578 - BACOVA_02464 0.55 -0.7
227,578 - BACOVA_02464 0.55 +1.2
227,578 - BACOVA_02464 0.55 -1.9
227,704 - BACOVA_02464 0.66 +1.6
227,808 - BACOVA_02464 0.75 +1.1
227,823 - BACOVA_02464 0.76 +1.2
227,834 - BACOVA_02464 0.77 -0.1
227,898 - BACOVA_02464 0.83 +1.9
227,900 - BACOVA_02464 0.83 +2.9
227,900 - BACOVA_02464 0.83 -0.6
227,903 - BACOVA_02464 0.83 -1.0
227,903 - BACOVA_02464 0.83 +1.1
227,910 - BACOVA_02464 0.84 +1.6

Or see this region's nucleotide sequence