Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01717

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01715 and BACOVA_01716 are separated by 87 nucleotidesBACOVA_01716 and BACOVA_01717 are separated by 180 nucleotidesBACOVA_01717 and BACOVA_01718 are separated by 119 nucleotides BACOVA_01715: BACOVA_01715 - aldose 1-epimerase, at 140,590 to 141,729 _01715 BACOVA_01716: BACOVA_01716 - hypothetical protein, at 141,817 to 141,924 _01716 BACOVA_01717: BACOVA_01717 - carbohydrate binding domain protein, at 142,105 to 144,087 _01717 BACOVA_01718: BACOVA_01718 - galactokinase, at 144,207 to 145,361 _01718 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 141.126 kb on + strand, within BACOVA_01715at 141.127 kb on - strand, within BACOVA_01715at 141.151 kb on - strand, within BACOVA_01715at 141.161 kb on + strand, within BACOVA_01715at 141.165 kb on + strand, within BACOVA_01715at 141.305 kb on + strand, within BACOVA_01715at 141.305 kb on + strand, within BACOVA_01715at 141.305 kb on + strand, within BACOVA_01715at 141.306 kb on - strand, within BACOVA_01715at 141.423 kb on + strand, within BACOVA_01715at 141.445 kb on + strand, within BACOVA_01715at 141.453 kb on + strand, within BACOVA_01715at 141.454 kb on - strand, within BACOVA_01715at 141.454 kb on - strand, within BACOVA_01715at 141.455 kb on + strand, within BACOVA_01715at 141.455 kb on + strand, within BACOVA_01715at 141.456 kb on - strand, within BACOVA_01715at 141.456 kb on - strand, within BACOVA_01715at 141.484 kb on + strand, within BACOVA_01715at 141.498 kb on + strand, within BACOVA_01715at 141.499 kb on - strand, within BACOVA_01715at 141.532 kb on - strand, within BACOVA_01715at 141.556 kb on + strand, within BACOVA_01715at 141.557 kb on - strand, within BACOVA_01715at 141.557 kb on - strand, within BACOVA_01715at 141.557 kb on - strand, within BACOVA_01715at 141.565 kb on - strand, within BACOVA_01715at 141.580 kb on + strand, within BACOVA_01715at 141.586 kb on - strand, within BACOVA_01715at 141.586 kb on - strand, within BACOVA_01715at 141.588 kb on - strand, within BACOVA_01715at 141.830 kb on + strand, within BACOVA_01716at 141.830 kb on + strand, within BACOVA_01716at 141.839 kb on + strand, within BACOVA_01716at 141.840 kb on - strand, within BACOVA_01716at 141.864 kb on - strand, within BACOVA_01716at 141.864 kb on - strand, within BACOVA_01716at 141.871 kb on - strand, within BACOVA_01716at 141.872 kb on + strand, within BACOVA_01716at 141.906 kb on + strand, within BACOVA_01716at 141.907 kb on - strand, within BACOVA_01716at 142.020 kb on + strandat 142.020 kb on + strandat 142.021 kb on - strandat 142.076 kb on + strandat 142.081 kb on - strandat 142.082 kb on + strandat 142.085 kb on - strandat 142.115 kb on - strandat 142.136 kb on + strandat 142.146 kb on + strandat 142.147 kb on - strandat 142.147 kb on - strandat 142.221 kb on + strandat 142.221 kb on + strandat 142.221 kb on + strandat 142.222 kb on - strandat 142.222 kb on - strandat 142.224 kb on + strandat 142.224 kb on + strandat 142.224 kb on + strandat 142.225 kb on - strandat 142.225 kb on - strandat 142.225 kb on - strandat 142.225 kb on - strandat 142.228 kb on + strandat 142.229 kb on - strandat 142.229 kb on - strandat 142.355 kb on + strand, within BACOVA_01717at 142.356 kb on - strand, within BACOVA_01717at 142.422 kb on + strand, within BACOVA_01717at 142.422 kb on + strand, within BACOVA_01717at 142.423 kb on - strand, within BACOVA_01717at 142.423 kb on - strand, within BACOVA_01717at 142.522 kb on - strand, within BACOVA_01717at 142.551 kb on - strand, within BACOVA_01717at 142.599 kb on + strand, within BACOVA_01717at 142.611 kb on + strand, within BACOVA_01717at 142.653 kb on + strand, within BACOVA_01717at 142.653 kb on + strand, within BACOVA_01717at 142.671 kb on - strand, within BACOVA_01717at 142.737 kb on + strand, within BACOVA_01717at 142.775 kb on + strand, within BACOVA_01717at 142.775 kb on + strand, within BACOVA_01717at 142.776 kb on - strand, within BACOVA_01717at 142.836 kb on - strand, within BACOVA_01717at 142.933 kb on - strand, within BACOVA_01717at 142.967 kb on - strand, within BACOVA_01717at 142.982 kb on - strand, within BACOVA_01717at 142.988 kb on - strand, within BACOVA_01717at 143.056 kb on + strand, within BACOVA_01717at 143.064 kb on + strand, within BACOVA_01717at 143.107 kb on + strand, within BACOVA_01717at 143.108 kb on - strand, within BACOVA_01717at 143.108 kb on - strand, within BACOVA_01717at 143.108 kb on - strand, within BACOVA_01717at 143.158 kb on - strand, within BACOVA_01717at 143.175 kb on - strand, within BACOVA_01717at 143.206 kb on - strand, within BACOVA_01717at 143.251 kb on + strand, within BACOVA_01717at 143.307 kb on + strand, within BACOVA_01717at 143.308 kb on - strand, within BACOVA_01717at 143.312 kb on + strand, within BACOVA_01717at 143.315 kb on + strand, within BACOVA_01717at 143.319 kb on + strand, within BACOVA_01717at 143.458 kb on + strand, within BACOVA_01717at 143.458 kb on + strand, within BACOVA_01717at 143.459 kb on - strand, within BACOVA_01717at 143.467 kb on - strand, within BACOVA_01717at 143.494 kb on + strand, within BACOVA_01717at 143.605 kb on + strand, within BACOVA_01717at 143.605 kb on + strand, within BACOVA_01717at 143.605 kb on + strand, within BACOVA_01717at 143.606 kb on - strand, within BACOVA_01717at 143.606 kb on - strand, within BACOVA_01717at 143.686 kb on - strand, within BACOVA_01717at 143.691 kb on + strand, within BACOVA_01717at 143.695 kb on + strand, within BACOVA_01717at 143.695 kb on + strand, within BACOVA_01717at 143.696 kb on - strand, within BACOVA_01717at 143.699 kb on - strand, within BACOVA_01717at 143.702 kb on + strand, within BACOVA_01717at 143.703 kb on - strand, within BACOVA_01717at 143.853 kb on + strand, within BACOVA_01717at 143.853 kb on + strand, within BACOVA_01717at 143.913 kb on - strandat 143.967 kb on + strandat 144.069 kb on + strandat 144.089 kb on + strandat 144.096 kb on - strandat 144.099 kb on + strandat 144.099 kb on + strandat 144.107 kb on - strandat 144.109 kb on + strandat 144.117 kb on + strandat 144.248 kb on - strandat 144.327 kb on - strand, within BACOVA_01718at 144.342 kb on - strand, within BACOVA_01718at 144.342 kb on - strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.479 kb on + strand, within BACOVA_01718at 144.483 kb on + strand, within BACOVA_01718at 144.484 kb on - strand, within BACOVA_01718at 144.549 kb on + strand, within BACOVA_01718at 144.550 kb on - strand, within BACOVA_01718at 144.553 kb on + strand, within BACOVA_01718at 144.553 kb on + strand, within BACOVA_01718at 144.553 kb on + strand, within BACOVA_01718at 144.566 kb on + strand, within BACOVA_01718at 144.567 kb on - strand, within BACOVA_01718at 144.568 kb on + strand, within BACOVA_01718at 144.569 kb on - strand, within BACOVA_01718at 144.603 kb on + strand, within BACOVA_01718at 144.603 kb on + strand, within BACOVA_01718at 144.603 kb on + strand, within BACOVA_01718at 144.604 kb on - strand, within BACOVA_01718at 144.608 kb on + strand, within BACOVA_01718at 144.617 kb on + strand, within BACOVA_01718at 144.698 kb on + strand, within BACOVA_01718at 144.699 kb on - strand, within BACOVA_01718at 144.699 kb on - strand, within BACOVA_01718at 144.778 kb on + strand, within BACOVA_01718at 144.778 kb on + strand, within BACOVA_01718at 144.779 kb on - strand, within BACOVA_01718at 144.854 kb on + strand, within BACOVA_01718at 144.925 kb on - strand, within BACOVA_01718at 144.996 kb on - strand, within BACOVA_01718at 144.996 kb on - strand, within BACOVA_01718at 144.996 kb on - strand, within BACOVA_01718at 145.077 kb on + strand, within BACOVA_01718

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Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
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141,126 + BACOVA_01715 0.47 +0.0
141,127 - BACOVA_01715 0.47 -1.8
141,151 - BACOVA_01715 0.49 -0.3
141,161 + BACOVA_01715 0.50 -1.9
141,165 + BACOVA_01715 0.50 -1.0
141,305 + BACOVA_01715 0.63 -0.5
141,305 + BACOVA_01715 0.63 -2.7
141,305 + BACOVA_01715 0.63 -4.5
141,306 - BACOVA_01715 0.63 -0.5
141,423 + BACOVA_01715 0.73 -3.5
141,445 + BACOVA_01715 0.75 -3.0
141,453 + BACOVA_01715 0.76 -2.1
141,454 - BACOVA_01715 0.76 -1.2
141,454 - BACOVA_01715 0.76 -1.0
141,455 + BACOVA_01715 0.76 -2.3
141,455 + BACOVA_01715 0.76 -2.5
141,456 - BACOVA_01715 0.76 -1.8
141,456 - BACOVA_01715 0.76 -2.8
141,484 + BACOVA_01715 0.78 +1.0
141,498 + BACOVA_01715 0.80 -0.8
141,499 - BACOVA_01715 0.80 -0.5
141,532 - BACOVA_01715 0.83 -3.1
141,556 + BACOVA_01715 0.85 -2.8
141,557 - BACOVA_01715 0.85 -1.9
141,557 - BACOVA_01715 0.85 -3.5
141,557 - BACOVA_01715 0.85 -3.5
141,565 - BACOVA_01715 0.86 -1.1
141,580 + BACOVA_01715 0.87 -0.5
141,586 - BACOVA_01715 0.87 -1.3
141,586 - BACOVA_01715 0.87 -0.2
141,588 - BACOVA_01715 0.88 -1.1
141,830 + BACOVA_01716 0.12 -0.3
141,830 + BACOVA_01716 0.12 -0.1
141,839 + BACOVA_01716 0.20 +0.7
141,840 - BACOVA_01716 0.21 +1.0
141,864 - BACOVA_01716 0.44 -0.2
141,864 - BACOVA_01716 0.44 +0.0
141,871 - BACOVA_01716 0.50 -1.1
141,872 + BACOVA_01716 0.51 -0.2
141,906 + BACOVA_01716 0.82 -0.8
141,907 - BACOVA_01716 0.83 +1.0
142,020 + -0.5
142,020 + -0.8
142,021 - +0.4
142,076 + +0.0
142,081 - -0.5
142,082 + +0.0
142,085 - -2.5
142,115 - -1.8
142,136 + +0.3
142,146 + +0.0
142,147 - -0.6
142,147 - -2.0
142,221 + +0.4
142,221 + +0.4
142,221 + -0.4
142,222 - +0.8
142,222 - -0.9
142,224 + -1.3
142,224 + -1.3
142,224 + -1.3
142,225 - +1.0
142,225 - -0.2
142,225 - +0.0
142,225 - +2.1
142,228 + +0.0
142,229 - -0.1
142,229 - -0.2
142,355 + BACOVA_01717 0.13 +0.2
142,356 - BACOVA_01717 0.13 +1.0
142,422 + BACOVA_01717 0.16 -1.0
142,422 + BACOVA_01717 0.16 +0.5
142,423 - BACOVA_01717 0.16 -1.0
142,423 - BACOVA_01717 0.16 +0.2
142,522 - BACOVA_01717 0.21 +0.2
142,551 - BACOVA_01717 0.22 -0.5
142,599 + BACOVA_01717 0.25 -0.8
142,611 + BACOVA_01717 0.26 -1.0
142,653 + BACOVA_01717 0.28 -0.5
142,653 + BACOVA_01717 0.28 -0.6
142,671 - BACOVA_01717 0.29 +1.0
142,737 + BACOVA_01717 0.32 +1.0
142,775 + BACOVA_01717 0.34 +0.7
142,775 + BACOVA_01717 0.34 -0.0
142,776 - BACOVA_01717 0.34 +1.0
142,836 - BACOVA_01717 0.37 -0.5
142,933 - BACOVA_01717 0.42 -0.4
142,967 - BACOVA_01717 0.43 -0.7
142,982 - BACOVA_01717 0.44 -1.3
142,988 - BACOVA_01717 0.45 +0.6
143,056 + BACOVA_01717 0.48 +0.4
143,064 + BACOVA_01717 0.48 -1.0
143,107 + BACOVA_01717 0.51 +0.0
143,108 - BACOVA_01717 0.51 +0.0
143,108 - BACOVA_01717 0.51 +1.5
143,108 - BACOVA_01717 0.51 +0.2
143,158 - BACOVA_01717 0.53 +0.8
143,175 - BACOVA_01717 0.54 -0.8
143,206 - BACOVA_01717 0.56 -0.5
143,251 + BACOVA_01717 0.58 +0.6
143,307 + BACOVA_01717 0.61 -0.4
143,308 - BACOVA_01717 0.61 -2.0
143,312 + BACOVA_01717 0.61 -0.8
143,315 + BACOVA_01717 0.61 -0.2
143,319 + BACOVA_01717 0.61 -1.4
143,458 + BACOVA_01717 0.68 -0.3
143,458 + BACOVA_01717 0.68 -0.2
143,459 - BACOVA_01717 0.68 +0.4
143,467 - BACOVA_01717 0.69 -1.3
143,494 + BACOVA_01717 0.70 +0.4
143,605 + BACOVA_01717 0.76 -0.3
143,605 + BACOVA_01717 0.76 -0.0
143,605 + BACOVA_01717 0.76 -0.7
143,606 - BACOVA_01717 0.76 +1.7
143,606 - BACOVA_01717 0.76 +0.0
143,686 - BACOVA_01717 0.80 +1.0
143,691 + BACOVA_01717 0.80 -0.4
143,695 + BACOVA_01717 0.80 +1.0
143,695 + BACOVA_01717 0.80 -0.5
143,696 - BACOVA_01717 0.80 +0.4
143,699 - BACOVA_01717 0.80 -1.0
143,702 + BACOVA_01717 0.81 +1.0
143,703 - BACOVA_01717 0.81 +0.6
143,853 + BACOVA_01717 0.88 -1.0
143,853 + BACOVA_01717 0.88 +1.6
143,913 - +0.0
143,967 + -0.8
144,069 + +0.5
144,089 + -0.6
144,096 - -0.8
144,099 + -2.0
144,099 + -0.5
144,107 - +0.3
144,109 + -0.2
144,117 + +1.0
144,248 - -2.7
144,327 - BACOVA_01718 0.10 +0.0
144,342 - BACOVA_01718 0.12 -1.0
144,342 - BACOVA_01718 0.12 -1.3
144,432 + BACOVA_01718 0.19 +0.2
144,432 + BACOVA_01718 0.19 -2.0
144,432 + BACOVA_01718 0.19 -1.0
144,432 + BACOVA_01718 0.19 +0.0
144,432 + BACOVA_01718 0.19 -1.1
144,479 + BACOVA_01718 0.24 +0.2
144,483 + BACOVA_01718 0.24 -0.6
144,484 - BACOVA_01718 0.24 -0.3
144,549 + BACOVA_01718 0.30 -0.6
144,550 - BACOVA_01718 0.30 +0.5
144,553 + BACOVA_01718 0.30 +0.3
144,553 + BACOVA_01718 0.30 +1.0
144,553 + BACOVA_01718 0.30 -0.4
144,566 + BACOVA_01718 0.31 -0.1
144,567 - BACOVA_01718 0.31 +0.1
144,568 + BACOVA_01718 0.31 -1.0
144,569 - BACOVA_01718 0.31 +0.5
144,603 + BACOVA_01718 0.34 -1.4
144,603 + BACOVA_01718 0.34 -2.0
144,603 + BACOVA_01718 0.34 +1.0
144,604 - BACOVA_01718 0.34 -0.4
144,608 + BACOVA_01718 0.35 +0.3
144,617 + BACOVA_01718 0.35 -0.2
144,698 + BACOVA_01718 0.43 -0.1
144,699 - BACOVA_01718 0.43 -1.0
144,699 - BACOVA_01718 0.43 -1.5
144,778 + BACOVA_01718 0.49 -0.5
144,778 + BACOVA_01718 0.49 +0.1
144,779 - BACOVA_01718 0.50 -0.4
144,854 + BACOVA_01718 0.56 +0.8
144,925 - BACOVA_01718 0.62 -0.0
144,996 - BACOVA_01718 0.68 -2.0
144,996 - BACOVA_01718 0.68 -2.0
144,996 - BACOVA_01718 0.68 +0.5
145,077 + BACOVA_01718 0.75 -3.0

Or see this region's nucleotide sequence