Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01635 and BACOVA_01636 are separated by 416 nucleotides BACOVA_01636 and BACOVA_01637 are separated by 213 nucleotides
BACOVA_01635: BACOVA_01635 - butyrate kinase, at 141,490 to 142,551
_01635
BACOVA_01636: BACOVA_01636 - putative alpha-1,2-mannosidase, at 142,968 to 145,250
_01636
BACOVA_01637: BACOVA_01637 - hypothetical protein, at 145,464 to 147,221
_01637
Position (kb) 142
143
144
145
146 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 142.017 kb on - strand, within BACOVA_01635 at 142.021 kb on - strand, within BACOVA_01635 at 142.021 kb on - strand, within BACOVA_01635 at 142.160 kb on + strand, within BACOVA_01635 at 142.203 kb on + strand, within BACOVA_01635 at 142.235 kb on + strand, within BACOVA_01635 at 142.235 kb on + strand, within BACOVA_01635 at 142.236 kb on - strand, within BACOVA_01635 at 142.240 kb on - strand, within BACOVA_01635 at 142.262 kb on + strand, within BACOVA_01635 at 142.262 kb on + strand, within BACOVA_01635 at 142.262 kb on + strand, within BACOVA_01635 at 142.263 kb on - strand, within BACOVA_01635 at 142.269 kb on + strand, within BACOVA_01635 at 142.284 kb on + strand, within BACOVA_01635 at 142.284 kb on + strand, within BACOVA_01635 at 142.284 kb on + strand, within BACOVA_01635 at 142.285 kb on - strand, within BACOVA_01635 at 142.285 kb on - strand, within BACOVA_01635 at 142.318 kb on + strand, within BACOVA_01635 at 142.319 kb on - strand, within BACOVA_01635 at 142.370 kb on + strand, within BACOVA_01635 at 142.370 kb on + strand, within BACOVA_01635 at 142.395 kb on + strand, within BACOVA_01635 at 142.396 kb on - strand, within BACOVA_01635 at 142.411 kb on + strand, within BACOVA_01635 at 142.412 kb on - strand, within BACOVA_01635 at 142.460 kb on - strand at 142.501 kb on - strand at 142.508 kb on + strand at 142.508 kb on + strand at 142.543 kb on + strand at 142.544 kb on - strand at 142.550 kb on - strand at 142.601 kb on - strand at 142.614 kb on - strand at 142.634 kb on - strand at 142.657 kb on + strand at 142.660 kb on + strand at 142.660 kb on + strand at 142.661 kb on - strand at 142.662 kb on + strand at 142.703 kb on + strand at 142.704 kb on - strand at 142.707 kb on - strand at 142.712 kb on + strand at 142.715 kb on + strand at 142.716 kb on - strand at 142.721 kb on + strand at 142.728 kb on + strand at 142.729 kb on - strand at 142.758 kb on - strand at 142.758 kb on - strand at 142.763 kb on - strand at 142.763 kb on - strand at 142.766 kb on - strand at 142.869 kb on + strand at 142.870 kb on - strand at 142.872 kb on - strand at 142.935 kb on + strand at 142.949 kb on + strand at 142.994 kb on - strand at 143.041 kb on - strand at 143.090 kb on + strand at 143.091 kb on - strand at 143.172 kb on + strand at 143.172 kb on + strand at 143.172 kb on + strand at 143.172 kb on + strand at 143.173 kb on - strand at 143.178 kb on + strand at 143.179 kb on - strand at 143.180 kb on + strand at 143.273 kb on + strand, within BACOVA_01636 at 143.343 kb on + strand, within BACOVA_01636 at 143.343 kb on + strand, within BACOVA_01636 at 143.343 kb on + strand, within BACOVA_01636 at 143.445 kb on + strand, within BACOVA_01636 at 143.446 kb on - strand, within BACOVA_01636 at 143.446 kb on - strand, within BACOVA_01636 at 143.446 kb on - strand, within BACOVA_01636 at 143.447 kb on + strand, within BACOVA_01636 at 143.519 kb on + strand, within BACOVA_01636 at 143.519 kb on + strand, within BACOVA_01636 at 143.520 kb on - strand, within BACOVA_01636 at 143.520 kb on - strand, within BACOVA_01636 at 143.520 kb on - strand, within BACOVA_01636 at 143.562 kb on + strand, within BACOVA_01636 at 143.562 kb on + strand, within BACOVA_01636 at 143.568 kb on - strand, within BACOVA_01636 at 143.608 kb on + strand, within BACOVA_01636 at 143.609 kb on - strand, within BACOVA_01636 at 143.669 kb on + strand, within BACOVA_01636 at 143.670 kb on - strand, within BACOVA_01636 at 143.672 kb on - strand, within BACOVA_01636 at 143.701 kb on + strand, within BACOVA_01636 at 143.701 kb on + strand, within BACOVA_01636 at 143.701 kb on + strand, within BACOVA_01636 at 143.702 kb on - strand, within BACOVA_01636 at 143.702 kb on - strand, within BACOVA_01636 at 143.702 kb on - strand, within BACOVA_01636 at 143.753 kb on + strand, within BACOVA_01636 at 143.821 kb on + strand, within BACOVA_01636 at 143.885 kb on - strand, within BACOVA_01636 at 143.917 kb on - strand, within BACOVA_01636 at 143.950 kb on - strand, within BACOVA_01636 at 143.984 kb on + strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 143.985 kb on - strand, within BACOVA_01636 at 144.035 kb on - strand, within BACOVA_01636 at 144.089 kb on + strand, within BACOVA_01636 at 144.093 kb on + strand, within BACOVA_01636 at 144.187 kb on - strand, within BACOVA_01636 at 144.187 kb on - strand, within BACOVA_01636 at 144.200 kb on + strand, within BACOVA_01636 at 144.205 kb on + strand, within BACOVA_01636 at 144.225 kb on + strand, within BACOVA_01636 at 144.235 kb on + strand, within BACOVA_01636 at 144.239 kb on - strand, within BACOVA_01636 at 144.256 kb on + strand, within BACOVA_01636 at 144.256 kb on + strand, within BACOVA_01636 at 144.256 kb on + strand, within BACOVA_01636 at 144.257 kb on - strand, within BACOVA_01636 at 144.269 kb on - strand, within BACOVA_01636 at 144.297 kb on + strand, within BACOVA_01636 at 144.297 kb on + strand, within BACOVA_01636 at 144.301 kb on - strand, within BACOVA_01636 at 144.302 kb on + strand, within BACOVA_01636 at 144.302 kb on + strand, within BACOVA_01636 at 144.305 kb on + strand, within BACOVA_01636 at 144.305 kb on + strand, within BACOVA_01636 at 144.305 kb on + strand, within BACOVA_01636 at 144.310 kb on + strand, within BACOVA_01636 at 144.315 kb on + strand, within BACOVA_01636 at 144.316 kb on - strand, within BACOVA_01636 at 144.366 kb on + strand, within BACOVA_01636 at 144.367 kb on - strand, within BACOVA_01636 at 144.367 kb on - strand, within BACOVA_01636 at 144.372 kb on + strand, within BACOVA_01636 at 144.373 kb on - strand, within BACOVA_01636 at 144.373 kb on - strand, within BACOVA_01636 at 144.373 kb on - strand, within BACOVA_01636 at 144.386 kb on + strand, within BACOVA_01636 at 144.386 kb on + strand, within BACOVA_01636 at 144.387 kb on - strand, within BACOVA_01636 at 144.460 kb on - strand, within BACOVA_01636 at 144.461 kb on + strand, within BACOVA_01636 at 144.462 kb on - strand, within BACOVA_01636 at 144.469 kb on + strand, within BACOVA_01636 at 144.582 kb on + strand, within BACOVA_01636 at 144.583 kb on - strand, within BACOVA_01636 at 144.596 kb on - strand, within BACOVA_01636 at 144.596 kb on - strand, within BACOVA_01636 at 144.625 kb on + strand, within BACOVA_01636 at 144.625 kb on + strand, within BACOVA_01636 at 144.647 kb on + strand, within BACOVA_01636 at 144.653 kb on + strand, within BACOVA_01636 at 144.653 kb on + strand, within BACOVA_01636 at 144.677 kb on - strand, within BACOVA_01636 at 144.700 kb on - strand, within BACOVA_01636 at 144.756 kb on + strand, within BACOVA_01636 at 144.757 kb on - strand, within BACOVA_01636 at 144.792 kb on + strand, within BACOVA_01636 at 144.792 kb on + strand, within BACOVA_01636 at 144.792 kb on + strand, within BACOVA_01636 at 144.793 kb on - strand, within BACOVA_01636 at 144.793 kb on - strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.798 kb on + strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.799 kb on - strand, within BACOVA_01636 at 144.832 kb on - strand, within BACOVA_01636 at 144.855 kb on - strand, within BACOVA_01636 at 144.861 kb on + strand, within BACOVA_01636 at 144.861 kb on + strand, within BACOVA_01636 at 144.882 kb on + strand, within BACOVA_01636 at 144.952 kb on + strand, within BACOVA_01636 at 144.952 kb on + strand, within BACOVA_01636 at 144.973 kb on - strand, within BACOVA_01636 at 144.973 kb on - strand, within BACOVA_01636 at 145.010 kb on - strand, within BACOVA_01636 at 145.067 kb on + strand at 145.067 kb on + strand at 145.068 kb on - strand at 145.068 kb on - strand at 145.068 kb on - strand at 145.068 kb on - strand at 145.072 kb on - strand at 145.072 kb on - strand at 145.072 kb on - strand at 145.074 kb on - strand at 145.105 kb on - strand at 145.116 kb on + strand at 145.117 kb on - strand at 145.120 kb on + strand at 145.121 kb on - strand at 145.139 kb on - strand at 145.154 kb on + strand at 145.155 kb on - strand at 145.183 kb on + strand at 145.184 kb on - strand at 145.226 kb on + strand at 145.226 kb on + strand at 145.279 kb on + strand at 145.280 kb on - strand at 145.294 kb on + strand at 145.295 kb on - strand at 145.306 kb on + strand at 145.306 kb on + strand at 145.306 kb on + strand at 145.307 kb on - strand at 145.309 kb on + strand at 145.351 kb on + strand at 145.352 kb on - strand at 145.361 kb on - strand at 145.390 kb on - strand at 145.422 kb on - strand at 145.439 kb on + strand at 145.440 kb on - strand at 145.440 kb on - strand at 145.441 kb on + strand at 145.441 kb on + strand at 145.442 kb on - strand at 145.451 kb on + strand at 145.451 kb on + strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.452 kb on - strand at 145.456 kb on + strand at 145.456 kb on + strand at 145.456 kb on + strand at 145.456 kb on + strand at 145.475 kb on + strand at 145.781 kb on - strand, within BACOVA_01637 at 145.821 kb on - strand, within BACOVA_01637 at 146.244 kb on - strand, within BACOVA_01637
Per-strain Table
Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C) remove 142,017 - BACOVA_01635 0.50 -2.2 142,021 - BACOVA_01635 0.50 -1.2 142,021 - BACOVA_01635 0.50 -2.5 142,160 + BACOVA_01635 0.63 -2.0 142,203 + BACOVA_01635 0.67 -2.1 142,235 + BACOVA_01635 0.70 -4.1 142,235 + BACOVA_01635 0.70 -2.7 142,236 - BACOVA_01635 0.70 -2.6 142,240 - BACOVA_01635 0.71 -1.7 142,262 + BACOVA_01635 0.73 -3.0 142,262 + BACOVA_01635 0.73 -2.7 142,262 + BACOVA_01635 0.73 -2.8 142,263 - BACOVA_01635 0.73 -1.0 142,269 + BACOVA_01635 0.73 -2.0 142,284 + BACOVA_01635 0.75 -4.0 142,284 + BACOVA_01635 0.75 +0.2 142,284 + BACOVA_01635 0.75 -3.6 142,285 - BACOVA_01635 0.75 -3.1 142,285 - BACOVA_01635 0.75 -2.5 142,318 + BACOVA_01635 0.78 -1.6 142,319 - BACOVA_01635 0.78 -1.9 142,370 + BACOVA_01635 0.83 -1.1 142,370 + BACOVA_01635 0.83 +0.2 142,395 + BACOVA_01635 0.85 -2.5 142,396 - BACOVA_01635 0.85 -0.5 142,411 + BACOVA_01635 0.87 -3.3 142,412 - BACOVA_01635 0.87 -2.1 142,460 - -1.2 142,501 - -1.2 142,508 + -3.2 142,508 + -0.4 142,543 + -2.5 142,544 - -1.3 142,550 - +0.5 142,601 - +0.4 142,614 - -0.6 142,634 - -0.4 142,657 + -1.2 142,660 + -0.8 142,660 + -1.5 142,661 - +0.7 142,662 + -0.4 142,703 + -1.5 142,704 - -0.4 142,707 - +0.9 142,712 + -0.8 142,715 + -2.1 142,716 - -0.8 142,721 + -1.0 142,728 + -0.5 142,729 - -0.3 142,758 - -0.3 142,758 - +0.6 142,763 - -1.5 142,763 - +1.8 142,766 - -0.8 142,869 + -0.8 142,870 - +0.4 142,872 - +0.5 142,935 + +0.2 142,949 + -0.4 142,994 - -0.0 143,041 - -1.4 143,090 + -0.8 143,091 - -0.9 143,172 + -0.4 143,172 + -0.1 143,172 + +0.6 143,172 + -0.5 143,173 - +0.2 143,178 + -0.4 143,179 - -0.3 143,180 + -0.0 143,273 + BACOVA_01636 0.13 +0.5 143,343 + BACOVA_01636 0.16 -1.8 143,343 + BACOVA_01636 0.16 -0.1 143,343 + BACOVA_01636 0.16 -0.8 143,445 + BACOVA_01636 0.21 -0.0 143,446 - BACOVA_01636 0.21 -0.8 143,446 - BACOVA_01636 0.21 +0.9 143,446 - BACOVA_01636 0.21 +0.9 143,447 + BACOVA_01636 0.21 -1.5 143,519 + BACOVA_01636 0.24 -0.2 143,519 + BACOVA_01636 0.24 -1.4 143,520 - BACOVA_01636 0.24 -0.9 143,520 - BACOVA_01636 0.24 +0.3 143,520 - BACOVA_01636 0.24 -0.6 143,562 + BACOVA_01636 0.26 +0.0 143,562 + BACOVA_01636 0.26 +0.0 143,568 - BACOVA_01636 0.26 +0.4 143,608 + BACOVA_01636 0.28 -0.9 143,609 - BACOVA_01636 0.28 +0.2 143,669 + BACOVA_01636 0.31 +0.8 143,670 - BACOVA_01636 0.31 +1.6 143,672 - BACOVA_01636 0.31 -0.1 143,701 + BACOVA_01636 0.32 +0.8 143,701 + BACOVA_01636 0.32 -1.1 143,701 + BACOVA_01636 0.32 -0.3 143,702 - BACOVA_01636 0.32 -0.2 143,702 - BACOVA_01636 0.32 +0.2 143,702 - BACOVA_01636 0.32 +0.8 143,753 + BACOVA_01636 0.34 -0.3 143,821 + BACOVA_01636 0.37 +0.8 143,885 - BACOVA_01636 0.40 +1.2 143,917 - BACOVA_01636 0.42 -0.2 143,950 - BACOVA_01636 0.43 -0.0 143,984 + BACOVA_01636 0.45 +0.5 143,985 - BACOVA_01636 0.45 -0.3 143,985 - BACOVA_01636 0.45 +0.1 143,985 - BACOVA_01636 0.45 -0.6 143,985 - BACOVA_01636 0.45 +0.2 143,985 - BACOVA_01636 0.45 +1.1 144,035 - BACOVA_01636 0.47 -0.0 144,089 + BACOVA_01636 0.49 +0.2 144,093 + BACOVA_01636 0.49 -0.5 144,187 - BACOVA_01636 0.53 +0.9 144,187 - BACOVA_01636 0.53 -0.2 144,200 + BACOVA_01636 0.54 -1.0 144,205 + BACOVA_01636 0.54 +1.2 144,225 + BACOVA_01636 0.55 -0.2 144,235 + BACOVA_01636 0.55 -0.7 144,239 - BACOVA_01636 0.56 -0.0 144,256 + BACOVA_01636 0.56 +0.9 144,256 + BACOVA_01636 0.56 -1.0 144,256 + BACOVA_01636 0.56 +1.0 144,257 - BACOVA_01636 0.56 +0.7 144,269 - BACOVA_01636 0.57 +0.7 144,297 + BACOVA_01636 0.58 +0.6 144,297 + BACOVA_01636 0.58 +0.5 144,301 - BACOVA_01636 0.58 +0.2 144,302 + BACOVA_01636 0.58 -0.4 144,302 + BACOVA_01636 0.58 -0.4 144,305 + BACOVA_01636 0.59 -0.1 144,305 + BACOVA_01636 0.59 -0.3 144,305 + BACOVA_01636 0.59 -0.0 144,310 + BACOVA_01636 0.59 -0.6 144,315 + BACOVA_01636 0.59 +0.6 144,316 - BACOVA_01636 0.59 +1.2 144,366 + BACOVA_01636 0.61 -0.3 144,367 - BACOVA_01636 0.61 -0.2 144,367 - BACOVA_01636 0.61 +0.1 144,372 + BACOVA_01636 0.61 +0.2 144,373 - BACOVA_01636 0.62 +0.4 144,373 - BACOVA_01636 0.62 -0.6 144,373 - BACOVA_01636 0.62 -0.0 144,386 + BACOVA_01636 0.62 -0.8 144,386 + BACOVA_01636 0.62 +0.6 144,387 - BACOVA_01636 0.62 -0.1 144,460 - BACOVA_01636 0.65 -1.2 144,461 + BACOVA_01636 0.65 +0.5 144,462 - BACOVA_01636 0.65 +0.2 144,469 + BACOVA_01636 0.66 -0.2 144,582 + BACOVA_01636 0.71 +0.8 144,583 - BACOVA_01636 0.71 -0.4 144,596 - BACOVA_01636 0.71 +0.5 144,596 - BACOVA_01636 0.71 -2.8 144,625 + BACOVA_01636 0.73 -0.1 144,625 + BACOVA_01636 0.73 +0.5 144,647 + BACOVA_01636 0.74 -0.4 144,653 + BACOVA_01636 0.74 -0.4 144,653 + BACOVA_01636 0.74 -0.4 144,677 - BACOVA_01636 0.75 +0.1 144,700 - BACOVA_01636 0.76 -0.1 144,756 + BACOVA_01636 0.78 +0.6 144,757 - BACOVA_01636 0.78 -0.1 144,792 + BACOVA_01636 0.80 +0.0 144,792 + BACOVA_01636 0.80 -2.0 144,792 + BACOVA_01636 0.80 +0.1 144,793 - BACOVA_01636 0.80 -0.7 144,793 - BACOVA_01636 0.80 +0.5 144,798 + BACOVA_01636 0.80 +1.5 144,798 + BACOVA_01636 0.80 -0.4 144,798 + BACOVA_01636 0.80 +0.5 144,798 + BACOVA_01636 0.80 +0.5 144,798 + BACOVA_01636 0.80 +0.2 144,799 - BACOVA_01636 0.80 +0.1 144,799 - BACOVA_01636 0.80 -0.2 144,799 - BACOVA_01636 0.80 +0.9 144,799 - BACOVA_01636 0.80 +0.8 144,832 - BACOVA_01636 0.82 -2.0 144,855 - BACOVA_01636 0.83 -0.1 144,861 + BACOVA_01636 0.83 +0.6 144,861 + BACOVA_01636 0.83 +0.5 144,882 + BACOVA_01636 0.84 -0.5 144,952 + BACOVA_01636 0.87 +1.2 144,952 + BACOVA_01636 0.87 -0.5 144,973 - BACOVA_01636 0.88 +0.3 144,973 - BACOVA_01636 0.88 +0.4 145,010 - BACOVA_01636 0.89 -0.4 145,067 + -0.0 145,067 + -0.3 145,068 - +0.5 145,068 - -2.5 145,068 - +0.0 145,068 - -0.2 145,072 - +0.2 145,072 - -0.2 145,072 - +0.1 145,074 - -0.5 145,105 - +0.4 145,116 + -2.1 145,117 - -0.5 145,120 + +1.2 145,121 - -1.0 145,139 - +0.9 145,154 + +1.2 145,155 - +0.7 145,183 + -0.4 145,184 - +0.4 145,226 + -0.7 145,226 + +0.9 145,279 + -0.4 145,280 - -1.6 145,294 + +0.1 145,295 - +0.0 145,306 + -0.6 145,306 + -1.0 145,306 + -2.4 145,307 - -1.0 145,309 + +2.2 145,351 + -0.8 145,352 - +0.0 145,361 - -1.4 145,390 - -0.9 145,422 - -0.5 145,439 + -0.2 145,440 - +0.2 145,440 - +0.8 145,441 + +0.2 145,441 + -0.3 145,442 - +0.4 145,451 + +0.2 145,451 + -0.7 145,452 - -0.1 145,452 - +0.7 145,452 - -0.2 145,452 - +0.6 145,452 - +0.8 145,456 + -0.5 145,456 + +0.2 145,456 + -0.1 145,456 + -0.4 145,475 + -1.0 145,781 - BACOVA_01637 0.18 -1.1 145,821 - BACOVA_01637 0.20 +0.4 146,244 - BACOVA_01637 0.44 -0.4
Or see this region's nucleotide sequence