Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00673

Experiment: Wheat Arabinoxylan; filtered 1 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00671 and BACOVA_00672 overlap by 4 nucleotidesBACOVA_00672 and BACOVA_00673 are separated by 39 nucleotidesBACOVA_00673 and BACOVA_00674 are separated by 87 nucleotides BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159 _00671 BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959 _00672 BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157 _00673 BACOVA_00674: BACOVA_00674 - outer membrane efflux protein, at 34,245 to 35,429 _00674 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 33.033 kb on + strandat 33.034 kb on - strandat 33.034 kb on - strandat 33.113 kb on - strandat 33.113 kb on - strandat 33.113 kb on - strandat 33.131 kb on - strandat 33.145 kb on + strandat 33.145 kb on + strandat 33.145 kb on + strandat 33.157 kb on + strandat 33.256 kb on + strand, within BACOVA_00672at 33.256 kb on + strand, within BACOVA_00672at 33.257 kb on - strand, within BACOVA_00672at 33.350 kb on - strand, within BACOVA_00672at 33.364 kb on - strand, within BACOVA_00672at 33.366 kb on + strand, within BACOVA_00672at 33.367 kb on - strand, within BACOVA_00672at 33.399 kb on - strand, within BACOVA_00672at 33.420 kb on + strand, within BACOVA_00672at 33.420 kb on + strand, within BACOVA_00672at 33.604 kb on - strand, within BACOVA_00672at 33.604 kb on - strand, within BACOVA_00672at 33.616 kb on + strand, within BACOVA_00672at 33.616 kb on + strand, within BACOVA_00672at 33.617 kb on - strand, within BACOVA_00672at 33.617 kb on - strand, within BACOVA_00672at 33.624 kb on + strand, within BACOVA_00672at 33.647 kb on + strand, within BACOVA_00672at 33.667 kb on - strand, within BACOVA_00672at 33.709 kb on + strand, within BACOVA_00672at 33.710 kb on - strand, within BACOVA_00672at 33.740 kb on - strand, within BACOVA_00672at 33.740 kb on - strand, within BACOVA_00672at 33.746 kb on + strand, within BACOVA_00672at 33.747 kb on - strand, within BACOVA_00672at 33.760 kb on - strand, within BACOVA_00672at 33.823 kb on + strand, within BACOVA_00672at 33.824 kb on - strand, within BACOVA_00672at 33.824 kb on - strand, within BACOVA_00672at 33.853 kb on + strand, within BACOVA_00672at 33.873 kb on + strand, within BACOVA_00672at 33.874 kb on - strand, within BACOVA_00672at 33.933 kb on + strandat 33.933 kb on + strandat 33.934 kb on - strandat 33.941 kb on + strandat 33.954 kb on + strandat 33.963 kb on + strandat 33.986 kb on + strandat 33.987 kb on - strandat 34.015 kb on + strand, within BACOVA_00673at 34.016 kb on - strand, within BACOVA_00673at 34.020 kb on + strand, within BACOVA_00673at 34.021 kb on - strand, within BACOVA_00673at 34.033 kb on + strand, within BACOVA_00673at 34.069 kb on + strand, within BACOVA_00673at 34.070 kb on - strand, within BACOVA_00673at 34.070 kb on - strand, within BACOVA_00673at 34.107 kb on + strand, within BACOVA_00673at 34.108 kb on - strand, within BACOVA_00673at 34.109 kb on + strand, within BACOVA_00673at 34.109 kb on + strand, within BACOVA_00673at 34.110 kb on - strand, within BACOVA_00673at 34.114 kb on - strand, within BACOVA_00673at 34.114 kb on - strand, within BACOVA_00673at 34.122 kb on - strand, within BACOVA_00673at 34.122 kb on - strand, within BACOVA_00673at 34.124 kb on + strand, within BACOVA_00673at 34.125 kb on - strand, within BACOVA_00673at 34.125 kb on - strand, within BACOVA_00673at 34.160 kb on + strandat 34.161 kb on - strandat 34.167 kb on + strandat 34.167 kb on + strandat 34.168 kb on - strandat 34.168 kb on - strandat 34.168 kb on - strandat 34.168 kb on - strandat 34.171 kb on + strandat 34.177 kb on + strandat 34.177 kb on + strandat 34.177 kb on + strandat 34.178 kb on - strandat 34.179 kb on + strandat 34.181 kb on + strandat 34.193 kb on - strandat 34.199 kb on + strandat 34.200 kb on - strandat 34.224 kb on + strandat 34.224 kb on + strandat 34.225 kb on - strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.239 kb on + strandat 34.240 kb on - strandat 34.242 kb on + strandat 34.243 kb on - strandat 34.243 kb on - strandat 34.246 kb on + strandat 34.247 kb on - strandat 34.249 kb on - strandat 34.249 kb on - strandat 34.249 kb on - strandat 34.286 kb on - strandat 34.335 kb on + strandat 34.348 kb on + strandat 34.428 kb on - strand, within BACOVA_00674at 34.428 kb on - strand, within BACOVA_00674at 34.430 kb on - strand, within BACOVA_00674at 34.508 kb on + strand, within BACOVA_00674at 34.599 kb on + strand, within BACOVA_00674at 34.674 kb on - strand, within BACOVA_00674at 34.716 kb on + strand, within BACOVA_00674at 34.787 kb on + strand, within BACOVA_00674at 34.976 kb on + strand, within BACOVA_00674at 35.067 kb on + strand, within BACOVA_00674at 35.139 kb on - strand, within BACOVA_00674

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Wheat Arabinoxylan; filtered 1 mg/ml (C)
remove
33,033 + +0.7
33,034 - +0.4
33,034 - +0.3
33,113 - +0.8
33,113 - -1.6
33,113 - +0.9
33,131 - -0.8
33,145 + +0.2
33,145 + -0.4
33,145 + -1.4
33,157 + +0.6
33,256 + BACOVA_00672 0.12 -0.3
33,256 + BACOVA_00672 0.12 -0.4
33,257 - BACOVA_00672 0.13 +0.7
33,350 - BACOVA_00672 0.24 -0.4
33,364 - BACOVA_00672 0.26 -0.7
33,366 + BACOVA_00672 0.26 -0.5
33,367 - BACOVA_00672 0.26 +1.2
33,399 - BACOVA_00672 0.30 -0.0
33,420 + BACOVA_00672 0.33 +0.5
33,420 + BACOVA_00672 0.33 -1.1
33,604 - BACOVA_00672 0.56 -0.6
33,604 - BACOVA_00672 0.56 -0.2
33,616 + BACOVA_00672 0.57 -1.8
33,616 + BACOVA_00672 0.57 -2.1
33,617 - BACOVA_00672 0.57 +0.1
33,617 - BACOVA_00672 0.57 +0.6
33,624 + BACOVA_00672 0.58 -0.7
33,647 + BACOVA_00672 0.61 +1.8
33,667 - BACOVA_00672 0.64 +0.8
33,709 + BACOVA_00672 0.69 -0.2
33,710 - BACOVA_00672 0.69 +0.6
33,740 - BACOVA_00672 0.73 +1.4
33,740 - BACOVA_00672 0.73 +0.3
33,746 + BACOVA_00672 0.73 -1.1
33,747 - BACOVA_00672 0.74 -0.0
33,760 - BACOVA_00672 0.75 +1.4
33,823 + BACOVA_00672 0.83 -0.3
33,824 - BACOVA_00672 0.83 -0.2
33,824 - BACOVA_00672 0.83 +0.4
33,853 + BACOVA_00672 0.87 +0.2
33,873 + BACOVA_00672 0.89 -0.9
33,874 - BACOVA_00672 0.89 +0.2
33,933 + +0.9
33,933 + -0.4
33,934 - -0.2
33,941 + -2.4
33,954 + -0.4
33,963 + +0.6
33,986 + -0.5
33,987 - -0.0
34,015 + BACOVA_00673 0.10 -0.1
34,016 - BACOVA_00673 0.11 +0.4
34,020 + BACOVA_00673 0.13 -2.0
34,021 - BACOVA_00673 0.14 -0.1
34,033 + BACOVA_00673 0.21 -0.3
34,069 + BACOVA_00673 0.44 -0.6
34,070 - BACOVA_00673 0.45 +2.4
34,070 - BACOVA_00673 0.45 +0.6
34,107 + BACOVA_00673 0.68 +0.1
34,108 - BACOVA_00673 0.69 +1.2
34,109 + BACOVA_00673 0.69 -0.2
34,109 + BACOVA_00673 0.69 +0.0
34,110 - BACOVA_00673 0.70 +0.2
34,114 - BACOVA_00673 0.72 -0.5
34,114 - BACOVA_00673 0.72 -0.8
34,122 - BACOVA_00673 0.77 +0.5
34,122 - BACOVA_00673 0.77 +0.4
34,124 + BACOVA_00673 0.79 +0.1
34,125 - BACOVA_00673 0.79 +0.9
34,125 - BACOVA_00673 0.79 +0.4
34,160 + -0.8
34,161 - -0.1
34,167 + +1.9
34,167 + +0.6
34,168 - -0.3
34,168 - +0.2
34,168 - +0.9
34,168 - -0.4
34,171 + -0.6
34,177 + -0.8
34,177 + +1.9
34,177 + +0.0
34,178 - -2.5
34,179 + -1.8
34,181 + -0.8
34,193 - +0.4
34,199 + +0.1
34,200 - -1.1
34,224 + -0.0
34,224 + -0.1
34,225 - +0.5
34,235 + +0.2
34,235 + +0.2
34,235 + -1.1
34,239 + -0.4
34,240 - +0.6
34,242 + -0.3
34,243 - -2.0
34,243 - +0.6
34,246 + +1.9
34,247 - -1.6
34,249 - -1.0
34,249 - +0.0
34,249 - -0.4
34,286 - -0.6
34,335 + -0.0
34,348 + +0.4
34,428 - BACOVA_00674 0.15 -1.0
34,428 - BACOVA_00674 0.15 -1.1
34,430 - BACOVA_00674 0.16 +0.0
34,508 + BACOVA_00674 0.22 -2.1
34,599 + BACOVA_00674 0.30 -2.3
34,674 - BACOVA_00674 0.36 +1.2
34,716 + BACOVA_00674 0.40 -0.6
34,787 + BACOVA_00674 0.46 -0.2
34,976 + BACOVA_00674 0.62 -0.1
35,067 + BACOVA_00674 0.69 -1.0
35,139 - BACOVA_00674 0.75 -1.1

Or see this region's nucleotide sequence