Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05330 and BACOVA_05331 are separated by 56 nucleotides BACOVA_05331 and BACOVA_05332 are separated by 20 nucleotides BACOVA_05332 and BACOVA_05333 are separated by 119 nucleotides BACOVA_05333 and BACOVA_05334 are separated by 4 nucleotides BACOVA_05334 and BACOVA_05335 overlap by 4 nucleotides
BACOVA_05330: BACOVA_05330 - type I site-specific deoxyribonuclease, HsdR family, at 816,268 to 819,099
_05330
BACOVA_05331: BACOVA_05331 - hypothetical protein, at 819,156 to 819,266
_05331
BACOVA_05332: BACOVA_05332 - hypothetical protein, at 819,287 to 819,754
_05332
BACOVA_05333: BACOVA_05333 - hypothetical protein, at 819,874 to 820,062
_05333
BACOVA_05334: BACOVA_05334 - hypothetical protein, at 820,067 to 820,213
_05334
BACOVA_05335: BACOVA_05335 - GroES-like protein, at 820,210 to 821,352
_05335
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 818.894 kb on - strand at 818.965 kb on - strand at 819.028 kb on - strand at 819.029 kb on + strand at 819.030 kb on - strand at 819.035 kb on + strand at 819.036 kb on - strand at 819.049 kb on + strand at 819.059 kb on - strand at 819.074 kb on - strand at 819.122 kb on + strand at 819.128 kb on - strand at 819.128 kb on - strand at 819.136 kb on - strand at 819.141 kb on + strand at 819.152 kb on - strand at 819.193 kb on + strand, within BACOVA_05331 at 819.202 kb on - strand, within BACOVA_05331 at 819.218 kb on - strand, within BACOVA_05331 at 819.224 kb on + strand, within BACOVA_05331 at 819.224 kb on + strand, within BACOVA_05331 at 819.225 kb on - strand, within BACOVA_05331 at 819.238 kb on + strand, within BACOVA_05331 at 819.239 kb on - strand, within BACOVA_05331 at 819.244 kb on + strand, within BACOVA_05331 at 819.260 kb on - strand at 819.279 kb on - strand at 819.280 kb on + strand at 819.289 kb on - strand at 819.309 kb on - strand at 819.326 kb on + strand at 819.326 kb on + strand at 819.327 kb on - strand at 819.327 kb on - strand at 819.327 kb on - strand at 819.331 kb on + strand at 819.334 kb on + strand, within BACOVA_05332 at 819.348 kb on + strand, within BACOVA_05332 at 819.384 kb on - strand, within BACOVA_05332 at 819.384 kb on - strand, within BACOVA_05332 at 819.386 kb on - strand, within BACOVA_05332 at 819.386 kb on - strand, within BACOVA_05332 at 819.386 kb on - strand, within BACOVA_05332 at 819.387 kb on + strand, within BACOVA_05332 at 819.387 kb on + strand, within BACOVA_05332 at 819.433 kb on + strand, within BACOVA_05332 at 819.437 kb on + strand, within BACOVA_05332 at 819.475 kb on + strand, within BACOVA_05332 at 819.491 kb on - strand, within BACOVA_05332 at 819.512 kb on - strand, within BACOVA_05332 at 819.534 kb on - strand, within BACOVA_05332 at 819.558 kb on - strand, within BACOVA_05332 at 819.668 kb on - strand, within BACOVA_05332 at 819.691 kb on + strand, within BACOVA_05332 at 819.692 kb on - strand, within BACOVA_05332 at 819.692 kb on - strand, within BACOVA_05332 at 819.692 kb on - strand, within BACOVA_05332 at 819.696 kb on - strand, within BACOVA_05332 at 819.722 kb on + strand at 819.729 kb on - strand at 819.731 kb on + strand at 819.732 kb on - strand at 819.738 kb on - strand at 819.776 kb on + strand at 819.781 kb on - strand at 819.814 kb on - strand at 819.814 kb on - strand at 819.817 kb on + strand at 819.935 kb on + strand, within BACOVA_05333 at 819.936 kb on - strand, within BACOVA_05333 at 819.936 kb on - strand, within BACOVA_05333 at 819.941 kb on + strand, within BACOVA_05333 at 819.967 kb on + strand, within BACOVA_05333 at 819.973 kb on - strand, within BACOVA_05333 at 819.985 kb on - strand, within BACOVA_05333 at 820.054 kb on - strand at 820.058 kb on - strand at 820.062 kb on + strand at 820.078 kb on + strand at 820.081 kb on - strand at 820.084 kb on - strand, within BACOVA_05334 at 820.127 kb on - strand, within BACOVA_05334 at 820.133 kb on - strand, within BACOVA_05334 at 820.200 kb on + strand at 820.201 kb on - strand at 820.206 kb on + strand at 820.230 kb on - strand at 820.286 kb on - strand at 820.289 kb on + strand at 820.290 kb on - strand at 820.309 kb on - strand at 820.311 kb on + strand at 820.321 kb on + strand at 820.327 kb on + strand, within BACOVA_05335 at 820.327 kb on + strand, within BACOVA_05335 at 820.328 kb on - strand, within BACOVA_05335 at 820.328 kb on - strand, within BACOVA_05335 at 820.329 kb on + strand, within BACOVA_05335 at 820.376 kb on + strand, within BACOVA_05335 at 820.401 kb on - strand, within BACOVA_05335 at 820.401 kb on - strand, within BACOVA_05335 at 820.443 kb on + strand, within BACOVA_05335 at 820.443 kb on + strand, within BACOVA_05335 at 820.499 kb on + strand, within BACOVA_05335 at 820.610 kb on - strand, within BACOVA_05335 at 820.610 kb on - strand, within BACOVA_05335 at 820.617 kb on + strand, within BACOVA_05335 at 820.617 kb on + strand, within BACOVA_05335 at 820.624 kb on - strand, within BACOVA_05335 at 820.632 kb on + strand, within BACOVA_05335 at 820.682 kb on - strand, within BACOVA_05335 at 820.682 kb on - strand, within BACOVA_05335 at 820.819 kb on - strand, within BACOVA_05335 at 820.819 kb on - strand, within BACOVA_05335 at 820.819 kb on - strand, within BACOVA_05335 at 820.857 kb on + strand, within BACOVA_05335 at 820.945 kb on + strand, within BACOVA_05335
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 818,894 - -1.0 818,965 - -0.5 819,028 - +1.8 819,029 + +1.3 819,030 - -1.0 819,035 + -0.2 819,036 - +0.3 819,049 + +0.7 819,059 - +0.4 819,074 - +0.3 819,122 + -2.2 819,128 - +1.9 819,128 - -0.7 819,136 - -1.2 819,141 + -0.8 819,152 - -0.5 819,193 + BACOVA_05331 0.33 +0.3 819,202 - BACOVA_05331 0.41 +0.6 819,218 - BACOVA_05331 0.56 +1.9 819,224 + BACOVA_05331 0.61 -0.4 819,224 + BACOVA_05331 0.61 +0.2 819,225 - BACOVA_05331 0.62 +1.1 819,238 + BACOVA_05331 0.74 +1.1 819,239 - BACOVA_05331 0.75 -0.0 819,244 + BACOVA_05331 0.79 +0.3 819,260 - +0.4 819,279 - +1.0 819,280 + -0.5 819,289 - +0.7 819,309 - -0.0 819,326 + +0.7 819,326 + +0.6 819,327 - +0.3 819,327 - -0.6 819,327 - -1.5 819,331 + +0.7 819,334 + BACOVA_05332 0.10 -0.9 819,348 + BACOVA_05332 0.13 -0.0 819,384 - BACOVA_05332 0.21 -0.4 819,384 - BACOVA_05332 0.21 +0.2 819,386 - BACOVA_05332 0.21 -0.5 819,386 - BACOVA_05332 0.21 -1.0 819,386 - BACOVA_05332 0.21 +0.3 819,387 + BACOVA_05332 0.21 +0.1 819,387 + BACOVA_05332 0.21 -0.2 819,433 + BACOVA_05332 0.31 -2.7 819,437 + BACOVA_05332 0.32 -0.1 819,475 + BACOVA_05332 0.40 +0.0 819,491 - BACOVA_05332 0.44 -1.8 819,512 - BACOVA_05332 0.48 +0.2 819,534 - BACOVA_05332 0.53 -0.4 819,558 - BACOVA_05332 0.58 -1.9 819,668 - BACOVA_05332 0.81 -0.7 819,691 + BACOVA_05332 0.86 +0.1 819,692 - BACOVA_05332 0.87 +0.4 819,692 - BACOVA_05332 0.87 -0.3 819,692 - BACOVA_05332 0.87 +2.9 819,696 - BACOVA_05332 0.87 -0.0 819,722 + -0.9 819,729 - -0.9 819,731 + -0.5 819,732 - -0.9 819,738 - -1.3 819,776 + +0.4 819,781 - -0.4 819,814 - -0.5 819,814 - -2.0 819,817 + +0.8 819,935 + BACOVA_05333 0.32 -1.2 819,936 - BACOVA_05333 0.33 +0.3 819,936 - BACOVA_05333 0.33 -2.6 819,941 + BACOVA_05333 0.35 +1.6 819,967 + BACOVA_05333 0.49 +0.8 819,973 - BACOVA_05333 0.52 -0.3 819,985 - BACOVA_05333 0.59 +0.8 820,054 - -0.1 820,058 - +0.5 820,062 + -0.3 820,078 + +0.9 820,081 - +1.3 820,084 - BACOVA_05334 0.12 -1.6 820,127 - BACOVA_05334 0.41 -1.8 820,133 - BACOVA_05334 0.45 +0.9 820,200 + +0.7 820,201 - +0.1 820,206 + -0.4 820,230 - +0.1 820,286 - -0.3 820,289 + +0.1 820,290 - +0.5 820,309 - +2.0 820,311 + +0.3 820,321 + -1.4 820,327 + BACOVA_05335 0.10 +1.9 820,327 + BACOVA_05335 0.10 +0.3 820,328 - BACOVA_05335 0.10 +0.5 820,328 - BACOVA_05335 0.10 -1.3 820,329 + BACOVA_05335 0.10 -0.3 820,376 + BACOVA_05335 0.15 +0.1 820,401 - BACOVA_05335 0.17 +0.6 820,401 - BACOVA_05335 0.17 +0.5 820,443 + BACOVA_05335 0.20 +0.3 820,443 + BACOVA_05335 0.20 +0.6 820,499 + BACOVA_05335 0.25 -0.6 820,610 - BACOVA_05335 0.35 -1.0 820,610 - BACOVA_05335 0.35 +0.3 820,617 + BACOVA_05335 0.36 +0.0 820,617 + BACOVA_05335 0.36 +1.1 820,624 - BACOVA_05335 0.36 +0.4 820,632 + BACOVA_05335 0.37 +0.7 820,682 - BACOVA_05335 0.41 +0.2 820,682 - BACOVA_05335 0.41 +0.6 820,819 - BACOVA_05335 0.53 -0.2 820,819 - BACOVA_05335 0.53 +0.7 820,819 - BACOVA_05335 0.53 -0.5 820,857 + BACOVA_05335 0.57 -0.3 820,945 + BACOVA_05335 0.64 +0.2
Or see this region's nucleotide sequence