Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05325 and BACOVA_05326 overlap by 8 nucleotides BACOVA_05326 and BACOVA_05327 are separated by 79 nucleotides BACOVA_05327 and BACOVA_05328 overlap by 8 nucleotides
BACOVA_05325: BACOVA_05325 - type I restriction modification DNA specificity domain protein, at 811,164 to 812,228
_05325
BACOVA_05326: BACOVA_05326 - hypothetical protein, at 812,221 to 812,745
_05326
BACOVA_05327: BACOVA_05327 - type I restriction modification DNA specificity domain protein, at 812,825 to 813,439
_05327
BACOVA_05328: BACOVA_05328 - type I restriction modification DNA specificity domain protein, at 813,432 to 814,661
_05328
Position (kb) 812
813
814 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 811.876 kb on + strand, within BACOVA_05325 at 811.876 kb on + strand, within BACOVA_05325 at 811.901 kb on - strand, within BACOVA_05325 at 811.932 kb on - strand, within BACOVA_05325 at 811.958 kb on - strand, within BACOVA_05325 at 811.961 kb on + strand, within BACOVA_05325 at 811.961 kb on + strand, within BACOVA_05325 at 811.961 kb on + strand, within BACOVA_05325 at 811.963 kb on + strand, within BACOVA_05325 at 811.988 kb on + strand, within BACOVA_05325 at 812.006 kb on - strand, within BACOVA_05325 at 812.056 kb on - strand, within BACOVA_05325 at 812.056 kb on - strand, within BACOVA_05325 at 812.056 kb on - strand, within BACOVA_05325 at 812.058 kb on - strand, within BACOVA_05325 at 812.059 kb on + strand, within BACOVA_05325 at 812.060 kb on - strand, within BACOVA_05325 at 812.060 kb on - strand, within BACOVA_05325 at 812.062 kb on + strand, within BACOVA_05325 at 812.062 kb on + strand, within BACOVA_05325 at 812.062 kb on + strand, within BACOVA_05325 at 812.121 kb on - strand, within BACOVA_05325 at 812.131 kb on + strand at 812.132 kb on - strand at 812.144 kb on - strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.185 kb on - strand at 812.185 kb on - strand at 812.185 kb on - strand at 812.189 kb on + strand at 812.206 kb on + strand at 812.223 kb on - strand at 812.223 kb on - strand at 812.224 kb on + strand at 812.225 kb on + strand at 812.225 kb on - strand at 812.262 kb on + strand at 812.262 kb on + strand at 812.262 kb on + strand at 812.264 kb on + strand at 812.265 kb on - strand at 812.265 kb on - strand at 812.265 kb on - strand at 812.309 kb on - strand, within BACOVA_05326 at 812.309 kb on - strand, within BACOVA_05326 at 812.322 kb on - strand, within BACOVA_05326 at 812.327 kb on - strand, within BACOVA_05326 at 812.385 kb on + strand, within BACOVA_05326 at 812.425 kb on + strand, within BACOVA_05326 at 812.433 kb on + strand, within BACOVA_05326 at 812.433 kb on + strand, within BACOVA_05326 at 812.434 kb on - strand, within BACOVA_05326 at 812.434 kb on - strand, within BACOVA_05326 at 812.435 kb on + strand, within BACOVA_05326 at 812.435 kb on + strand, within BACOVA_05326 at 812.441 kb on + strand, within BACOVA_05326 at 812.441 kb on + strand, within BACOVA_05326 at 812.442 kb on - strand, within BACOVA_05326 at 812.461 kb on + strand, within BACOVA_05326 at 812.547 kb on + strand, within BACOVA_05326 at 812.548 kb on - strand, within BACOVA_05326 at 812.556 kb on - strand, within BACOVA_05326 at 812.576 kb on - strand, within BACOVA_05326 at 812.590 kb on + strand, within BACOVA_05326 at 812.590 kb on + strand, within BACOVA_05326 at 812.619 kb on + strand, within BACOVA_05326 at 812.678 kb on - strand, within BACOVA_05326 at 812.686 kb on - strand, within BACOVA_05326 at 812.686 kb on - strand, within BACOVA_05326 at 812.701 kb on + strand at 812.701 kb on + strand at 812.702 kb on - strand at 812.702 kb on - strand at 812.715 kb on + strand at 812.751 kb on + strand at 812.752 kb on - strand at 812.796 kb on + strand at 812.797 kb on - strand at 812.812 kb on - strand at 812.812 kb on - strand at 812.831 kb on + strand at 812.833 kb on + strand at 812.833 kb on + strand at 812.834 kb on - strand at 812.834 kb on - strand at 812.834 kb on - strand at 812.846 kb on - strand at 812.856 kb on + strand at 812.857 kb on - strand at 812.857 kb on - strand at 812.942 kb on - strand, within BACOVA_05327 at 812.948 kb on + strand, within BACOVA_05327 at 812.952 kb on - strand, within BACOVA_05327 at 812.953 kb on + strand, within BACOVA_05327 at 812.977 kb on + strand, within BACOVA_05327 at 812.978 kb on - strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.001 kb on + strand, within BACOVA_05327 at 813.002 kb on - strand, within BACOVA_05327 at 813.005 kb on + strand, within BACOVA_05327 at 813.005 kb on + strand, within BACOVA_05327 at 813.006 kb on - strand, within BACOVA_05327 at 813.078 kb on - strand, within BACOVA_05327 at 813.078 kb on - strand, within BACOVA_05327 at 813.080 kb on - strand, within BACOVA_05327 at 813.084 kb on + strand, within BACOVA_05327 at 813.084 kb on + strand, within BACOVA_05327 at 813.084 kb on + strand, within BACOVA_05327 at 813.088 kb on - strand, within BACOVA_05327 at 813.117 kb on + strand, within BACOVA_05327 at 813.136 kb on + strand, within BACOVA_05327 at 813.186 kb on + strand, within BACOVA_05327 at 813.216 kb on - strand, within BACOVA_05327 at 813.220 kb on + strand, within BACOVA_05327 at 813.220 kb on + strand, within BACOVA_05327 at 813.220 kb on + strand, within BACOVA_05327 at 813.221 kb on - strand, within BACOVA_05327 at 813.221 kb on - strand, within BACOVA_05327 at 813.230 kb on + strand, within BACOVA_05327 at 813.316 kb on + strand, within BACOVA_05327 at 813.317 kb on - strand, within BACOVA_05327 at 813.385 kb on - strand at 813.385 kb on - strand at 813.385 kb on - strand at 813.388 kb on + strand at 813.388 kb on + strand at 813.413 kb on + strand at 813.414 kb on - strand at 813.433 kb on + strand at 813.434 kb on - strand at 813.436 kb on - strand at 813.484 kb on - strand at 813.500 kb on + strand at 813.517 kb on + strand at 813.517 kb on + strand at 813.526 kb on - strand at 813.526 kb on - strand at 813.552 kb on - strand at 813.580 kb on + strand, within BACOVA_05328 at 813.588 kb on + strand, within BACOVA_05328 at 813.637 kb on - strand, within BACOVA_05328 at 813.641 kb on + strand, within BACOVA_05328 at 813.645 kb on - strand, within BACOVA_05328 at 813.678 kb on + strand, within BACOVA_05328 at 813.679 kb on - strand, within BACOVA_05328 at 813.735 kb on + strand, within BACOVA_05328 at 813.735 kb on + strand, within BACOVA_05328 at 813.739 kb on + strand, within BACOVA_05328 at 813.752 kb on + strand, within BACOVA_05328 at 813.790 kb on - strand, within BACOVA_05328 at 813.793 kb on - strand, within BACOVA_05328 at 813.793 kb on - strand, within BACOVA_05328 at 813.793 kb on - strand, within BACOVA_05328 at 813.797 kb on + strand, within BACOVA_05328 at 813.828 kb on + strand, within BACOVA_05328 at 813.828 kb on + strand, within BACOVA_05328 at 813.828 kb on + strand, within BACOVA_05328 at 813.830 kb on + strand, within BACOVA_05328 at 813.849 kb on + strand, within BACOVA_05328 at 813.849 kb on + strand, within BACOVA_05328 at 813.850 kb on - strand, within BACOVA_05328 at 813.850 kb on - strand, within BACOVA_05328 at 813.873 kb on + strand, within BACOVA_05328 at 813.874 kb on - strand, within BACOVA_05328 at 813.874 kb on - strand, within BACOVA_05328 at 813.875 kb on + strand, within BACOVA_05328 at 813.900 kb on + strand, within BACOVA_05328 at 813.901 kb on - strand, within BACOVA_05328 at 813.935 kb on - strand, within BACOVA_05328 at 813.978 kb on - strand, within BACOVA_05328 at 813.990 kb on + strand, within BACOVA_05328 at 813.991 kb on - strand, within BACOVA_05328 at 813.991 kb on - strand, within BACOVA_05328 at 813.991 kb on - strand, within BACOVA_05328 at 813.992 kb on + strand, within BACOVA_05328 at 814.088 kb on + strand, within BACOVA_05328 at 814.088 kb on + strand, within BACOVA_05328 at 814.089 kb on - strand, within BACOVA_05328 at 814.109 kb on + strand, within BACOVA_05328 at 814.147 kb on + strand, within BACOVA_05328 at 814.147 kb on + strand, within BACOVA_05328 at 814.148 kb on - strand, within BACOVA_05328 at 814.170 kb on - strand, within BACOVA_05328 at 814.178 kb on - strand, within BACOVA_05328 at 814.182 kb on - strand, within BACOVA_05328 at 814.211 kb on - strand, within BACOVA_05328 at 814.216 kb on - strand, within BACOVA_05328 at 814.241 kb on + strand, within BACOVA_05328 at 814.295 kb on + strand, within BACOVA_05328 at 814.295 kb on + strand, within BACOVA_05328 at 814.296 kb on - strand, within BACOVA_05328 at 814.296 kb on - strand, within BACOVA_05328 at 814.329 kb on - strand, within BACOVA_05328 at 814.372 kb on - strand, within BACOVA_05328 at 814.372 kb on - strand, within BACOVA_05328 at 814.407 kb on + strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328 at 814.408 kb on - strand, within BACOVA_05328
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 811,876 + BACOVA_05325 0.67 +0.6 811,876 + BACOVA_05325 0.67 +0.4 811,901 - BACOVA_05325 0.69 -1.0 811,932 - BACOVA_05325 0.72 +2.4 811,958 - BACOVA_05325 0.75 +0.5 811,961 + BACOVA_05325 0.75 -0.7 811,961 + BACOVA_05325 0.75 -0.9 811,961 + BACOVA_05325 0.75 -0.2 811,963 + BACOVA_05325 0.75 -0.3 811,988 + BACOVA_05325 0.77 -2.0 812,006 - BACOVA_05325 0.79 -0.6 812,056 - BACOVA_05325 0.84 +0.1 812,056 - BACOVA_05325 0.84 +1.0 812,056 - BACOVA_05325 0.84 +1.3 812,058 - BACOVA_05325 0.84 +0.3 812,059 + BACOVA_05325 0.84 +0.3 812,060 - BACOVA_05325 0.84 +0.2 812,060 - BACOVA_05325 0.84 -0.7 812,062 + BACOVA_05325 0.84 -1.5 812,062 + BACOVA_05325 0.84 +0.3 812,062 + BACOVA_05325 0.84 -1.0 812,121 - BACOVA_05325 0.90 +1.3 812,131 + +0.2 812,132 - -0.0 812,144 - -0.7 812,184 + +0.2 812,184 + -0.3 812,184 + +2.3 812,184 + -0.2 812,184 + -0.7 812,184 + -1.4 812,185 - -0.4 812,185 - +0.1 812,185 - +1.3 812,189 + -0.9 812,206 + +0.5 812,223 - +1.2 812,223 - +1.0 812,224 + +0.3 812,225 + -0.3 812,225 - +0.5 812,262 + +0.7 812,262 + -1.3 812,262 + -0.0 812,264 + -1.0 812,265 - +1.0 812,265 - +0.5 812,265 - +0.8 812,309 - BACOVA_05326 0.17 -0.9 812,309 - BACOVA_05326 0.17 +0.8 812,322 - BACOVA_05326 0.19 -0.8 812,327 - BACOVA_05326 0.20 -1.4 812,385 + BACOVA_05326 0.31 -1.7 812,425 + BACOVA_05326 0.39 -0.3 812,433 + BACOVA_05326 0.40 +0.8 812,433 + BACOVA_05326 0.40 +0.3 812,434 - BACOVA_05326 0.41 +0.3 812,434 - BACOVA_05326 0.41 +1.1 812,435 + BACOVA_05326 0.41 +0.3 812,435 + BACOVA_05326 0.41 -1.5 812,441 + BACOVA_05326 0.42 -0.0 812,441 + BACOVA_05326 0.42 -0.1 812,442 - BACOVA_05326 0.42 -1.2 812,461 + BACOVA_05326 0.46 -0.2 812,547 + BACOVA_05326 0.62 +1.3 812,548 - BACOVA_05326 0.62 +2.2 812,556 - BACOVA_05326 0.64 -0.7 812,576 - BACOVA_05326 0.68 -0.8 812,590 + BACOVA_05326 0.70 +0.7 812,590 + BACOVA_05326 0.70 +0.6 812,619 + BACOVA_05326 0.76 -1.3 812,678 - BACOVA_05326 0.87 -1.7 812,686 - BACOVA_05326 0.89 +0.2 812,686 - BACOVA_05326 0.89 -0.4 812,701 + +0.3 812,701 + -1.3 812,702 - +1.4 812,702 - -0.0 812,715 + +1.7 812,751 + +0.3 812,752 - +3.6 812,796 + -0.7 812,797 - +0.3 812,812 - +1.3 812,812 - +0.1 812,831 + +0.5 812,833 + -1.9 812,833 + +0.8 812,834 - -0.7 812,834 - +1.4 812,834 - +1.3 812,846 - -0.0 812,856 + +0.2 812,857 - -1.0 812,857 - +0.8 812,942 - BACOVA_05327 0.19 +1.5 812,948 + BACOVA_05327 0.20 +1.8 812,952 - BACOVA_05327 0.21 -0.1 812,953 + BACOVA_05327 0.21 -2.7 812,977 + BACOVA_05327 0.25 +1.6 812,978 - BACOVA_05327 0.25 +0.1 813,001 + BACOVA_05327 0.29 +0.9 813,001 + BACOVA_05327 0.29 +0.0 813,001 + BACOVA_05327 0.29 +0.5 813,001 + BACOVA_05327 0.29 +0.3 813,001 + BACOVA_05327 0.29 -1.0 813,002 - BACOVA_05327 0.29 -0.8 813,005 + BACOVA_05327 0.29 -0.3 813,005 + BACOVA_05327 0.29 +0.1 813,006 - BACOVA_05327 0.29 +0.7 813,078 - BACOVA_05327 0.41 -0.8 813,078 - BACOVA_05327 0.41 -0.1 813,080 - BACOVA_05327 0.41 +0.2 813,084 + BACOVA_05327 0.42 -0.3 813,084 + BACOVA_05327 0.42 -0.0 813,084 + BACOVA_05327 0.42 +0.4 813,088 - BACOVA_05327 0.43 +0.1 813,117 + BACOVA_05327 0.47 +0.1 813,136 + BACOVA_05327 0.51 -0.3 813,186 + BACOVA_05327 0.59 +0.4 813,216 - BACOVA_05327 0.64 +0.3 813,220 + BACOVA_05327 0.64 -0.5 813,220 + BACOVA_05327 0.64 -0.7 813,220 + BACOVA_05327 0.64 +1.0 813,221 - BACOVA_05327 0.64 -0.6 813,221 - BACOVA_05327 0.64 -0.6 813,230 + BACOVA_05327 0.66 -0.4 813,316 + BACOVA_05327 0.80 +0.6 813,317 - BACOVA_05327 0.80 +0.3 813,385 - -1.5 813,385 - +0.3 813,385 - -1.7 813,388 + +2.5 813,388 + -0.7 813,413 + +0.8 813,414 - +0.1 813,433 + +1.7 813,434 - +0.1 813,436 - -1.2 813,484 - +0.4 813,500 + -0.4 813,517 + -1.0 813,517 + +0.8 813,526 - +1.0 813,526 - +0.6 813,552 - +1.9 813,580 + BACOVA_05328 0.12 +0.3 813,588 + BACOVA_05328 0.13 +0.9 813,637 - BACOVA_05328 0.17 -0.9 813,641 + BACOVA_05328 0.17 -0.2 813,645 - BACOVA_05328 0.17 +0.2 813,678 + BACOVA_05328 0.20 -1.1 813,679 - BACOVA_05328 0.20 +1.1 813,735 + BACOVA_05328 0.25 -0.9 813,735 + BACOVA_05328 0.25 -0.7 813,739 + BACOVA_05328 0.25 +0.6 813,752 + BACOVA_05328 0.26 -0.8 813,790 - BACOVA_05328 0.29 +0.7 813,793 - BACOVA_05328 0.29 +0.0 813,793 - BACOVA_05328 0.29 +0.7 813,793 - BACOVA_05328 0.29 -0.0 813,797 + BACOVA_05328 0.30 -0.7 813,828 + BACOVA_05328 0.32 +1.3 813,828 + BACOVA_05328 0.32 -0.3 813,828 + BACOVA_05328 0.32 -1.5 813,830 + BACOVA_05328 0.32 -1.5 813,849 + BACOVA_05328 0.34 -0.6 813,849 + BACOVA_05328 0.34 +0.7 813,850 - BACOVA_05328 0.34 -1.3 813,850 - BACOVA_05328 0.34 +1.3 813,873 + BACOVA_05328 0.36 +0.1 813,874 - BACOVA_05328 0.36 +0.4 813,874 - BACOVA_05328 0.36 +0.1 813,875 + BACOVA_05328 0.36 +1.3 813,900 + BACOVA_05328 0.38 -0.3 813,901 - BACOVA_05328 0.38 -0.0 813,935 - BACOVA_05328 0.41 +0.5 813,978 - BACOVA_05328 0.44 +0.3 813,990 + BACOVA_05328 0.45 +0.7 813,991 - BACOVA_05328 0.45 +0.8 813,991 - BACOVA_05328 0.45 +0.3 813,991 - BACOVA_05328 0.45 +0.3 813,992 + BACOVA_05328 0.46 +0.7 814,088 + BACOVA_05328 0.53 -0.4 814,088 + BACOVA_05328 0.53 -0.1 814,089 - BACOVA_05328 0.53 +0.7 814,109 + BACOVA_05328 0.55 -0.4 814,147 + BACOVA_05328 0.58 +1.5 814,147 + BACOVA_05328 0.58 +2.3 814,148 - BACOVA_05328 0.58 +0.6 814,170 - BACOVA_05328 0.60 +0.4 814,178 - BACOVA_05328 0.61 +0.5 814,182 - BACOVA_05328 0.61 +0.2 814,211 - BACOVA_05328 0.63 +0.7 814,216 - BACOVA_05328 0.64 -1.0 814,241 + BACOVA_05328 0.66 +1.3 814,295 + BACOVA_05328 0.70 +0.5 814,295 + BACOVA_05328 0.70 -0.3 814,296 - BACOVA_05328 0.70 +1.1 814,296 - BACOVA_05328 0.70 +0.5 814,329 - BACOVA_05328 0.73 -0.8 814,372 - BACOVA_05328 0.76 -0.7 814,372 - BACOVA_05328 0.76 -0.1 814,407 + BACOVA_05328 0.79 +0.1 814,408 - BACOVA_05328 0.79 +0.5 814,408 - BACOVA_05328 0.79 +0.5 814,408 - BACOVA_05328 0.79 -0.1 814,408 - BACOVA_05328 0.79 +1.3
Or see this region's nucleotide sequence