Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05166 and BACOVA_05167 are separated by 27 nucleotides BACOVA_05167 and BACOVA_05168 are separated by 105 nucleotides BACOVA_05168 and BACOVA_05169 are separated by 12 nucleotides BACOVA_05169 and BACOVA_05170 overlap by 97 nucleotides
BACOVA_05166: BACOVA_05166 - hypothetical protein, at 653,479 to 653,859
_05166
BACOVA_05167: BACOVA_05167 - hypothetical protein, at 653,887 to 654,354
_05167
BACOVA_05168: BACOVA_05168 - MazG family protein, at 654,460 to 655,248
_05168
BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244
_05169
BACOVA_05170: BACOVA_05170 - hypothetical protein, at 656,148 to 656,315
_05170
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 653.499 kb on - strand at 653.546 kb on - strand, within BACOVA_05166 at 653.607 kb on + strand, within BACOVA_05166 at 653.653 kb on + strand, within BACOVA_05166 at 653.653 kb on + strand, within BACOVA_05166 at 653.653 kb on + strand, within BACOVA_05166 at 653.655 kb on + strand, within BACOVA_05166 at 653.754 kb on + strand, within BACOVA_05166 at 653.769 kb on - strand, within BACOVA_05166 at 653.822 kb on - strand at 653.825 kb on + strand at 653.834 kb on - strand at 653.834 kb on - strand at 653.834 kb on - strand at 653.852 kb on + strand at 653.853 kb on - strand at 653.862 kb on + strand at 653.898 kb on + strand at 653.918 kb on + strand at 653.919 kb on - strand at 653.919 kb on - strand at 653.919 kb on - strand at 653.919 kb on - strand at 653.928 kb on + strand at 653.929 kb on - strand at 653.929 kb on - strand at 654.135 kb on + strand, within BACOVA_05167 at 654.154 kb on + strand, within BACOVA_05167 at 654.217 kb on + strand, within BACOVA_05167 at 654.218 kb on - strand, within BACOVA_05167 at 654.303 kb on - strand, within BACOVA_05167 at 654.414 kb on + strand at 654.427 kb on + strand at 654.462 kb on - strand at 654.516 kb on + strand at 654.517 kb on - strand at 654.560 kb on + strand, within BACOVA_05168 at 654.560 kb on + strand, within BACOVA_05168 at 654.721 kb on + strand, within BACOVA_05168 at 654.775 kb on + strand, within BACOVA_05168 at 654.803 kb on + strand, within BACOVA_05168 at 654.814 kb on - strand, within BACOVA_05168 at 654.847 kb on + strand, within BACOVA_05168 at 654.847 kb on + strand, within BACOVA_05168 at 654.847 kb on + strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.855 kb on + strand, within BACOVA_05168 at 654.856 kb on - strand, within BACOVA_05168 at 655.023 kb on + strand, within BACOVA_05168 at 655.023 kb on + strand, within BACOVA_05168 at 655.023 kb on + strand, within BACOVA_05168 at 655.024 kb on - strand, within BACOVA_05168 at 655.028 kb on + strand, within BACOVA_05168 at 655.048 kb on + strand, within BACOVA_05168 at 655.048 kb on + strand, within BACOVA_05168 at 655.049 kb on - strand, within BACOVA_05168 at 655.113 kb on - strand, within BACOVA_05168 at 655.123 kb on + strand, within BACOVA_05168 at 655.123 kb on + strand, within BACOVA_05168 at 655.248 kb on + strand at 655.248 kb on + strand at 655.249 kb on - strand at 655.249 kb on - strand at 655.291 kb on + strand at 655.303 kb on + strand at 655.304 kb on - strand at 655.307 kb on - strand at 655.336 kb on + strand at 655.336 kb on + strand at 655.364 kb on + strand, within BACOVA_05169 at 655.366 kb on + strand, within BACOVA_05169 at 655.401 kb on - strand, within BACOVA_05169 at 655.401 kb on - strand, within BACOVA_05169 at 655.416 kb on - strand, within BACOVA_05169 at 655.416 kb on - strand, within BACOVA_05169 at 655.478 kb on + strand, within BACOVA_05169 at 655.538 kb on + strand, within BACOVA_05169 at 655.621 kb on - strand, within BACOVA_05169 at 655.624 kb on + strand, within BACOVA_05169 at 655.625 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.662 kb on - strand, within BACOVA_05169 at 655.732 kb on + strand, within BACOVA_05169 at 655.810 kb on - strand, within BACOVA_05169 at 655.849 kb on + strand, within BACOVA_05169 at 655.894 kb on + strand, within BACOVA_05169 at 655.895 kb on - strand, within BACOVA_05169 at 655.905 kb on + strand, within BACOVA_05169 at 655.906 kb on - strand, within BACOVA_05169 at 655.908 kb on - strand, within BACOVA_05169 at 655.944 kb on - strand, within BACOVA_05169 at 655.950 kb on + strand, within BACOVA_05169 at 655.951 kb on + strand, within BACOVA_05169 at 655.991 kb on + strand, within BACOVA_05169 at 656.012 kb on + strand, within BACOVA_05169 at 656.020 kb on + strand, within BACOVA_05169 at 656.021 kb on - strand, within BACOVA_05169 at 656.024 kb on + strand, within BACOVA_05169 at 656.024 kb on + strand, within BACOVA_05169 at 656.082 kb on + strand, within BACOVA_05169 at 656.097 kb on - strand, within BACOVA_05169 at 656.097 kb on - strand, within BACOVA_05169 at 656.109 kb on + strand, within BACOVA_05169 at 656.127 kb on + strand, within BACOVA_05169 at 656.127 kb on + strand, within BACOVA_05169 at 656.128 kb on - strand, within BACOVA_05169 at 656.128 kb on - strand, within BACOVA_05169 at 656.137 kb on - strand, within BACOVA_05169 at 656.137 kb on - strand, within BACOVA_05169 at 656.140 kb on + strand, within BACOVA_05169 at 656.141 kb on - strand, within BACOVA_05169 at 656.141 kb on - strand, within BACOVA_05169 at 656.164 kb on + strand at 656.204 kb on - strand at 656.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 653,499 - +1.9 653,546 - BACOVA_05166 0.18 +0.1 653,607 + BACOVA_05166 0.34 -1.0 653,653 + BACOVA_05166 0.46 +1.9 653,653 + BACOVA_05166 0.46 -1.7 653,653 + BACOVA_05166 0.46 +1.1 653,655 + BACOVA_05166 0.46 +1.1 653,754 + BACOVA_05166 0.72 -0.4 653,769 - BACOVA_05166 0.76 -1.4 653,822 - -0.3 653,825 + +1.5 653,834 - +0.7 653,834 - +0.1 653,834 - -0.1 653,852 + -1.2 653,853 - +1.9 653,862 + +1.5 653,898 + -0.2 653,918 + -1.5 653,919 - +2.5 653,919 - +2.3 653,919 - -0.6 653,919 - +0.1 653,928 + -0.2 653,929 - +0.2 653,929 - +0.3 654,135 + BACOVA_05167 0.53 +0.1 654,154 + BACOVA_05167 0.57 -1.2 654,217 + BACOVA_05167 0.71 -0.8 654,218 - BACOVA_05167 0.71 +0.3 654,303 - BACOVA_05167 0.89 -1.9 654,414 + +0.2 654,427 + +0.7 654,462 - -0.7 654,516 + -0.7 654,517 - -1.0 654,560 + BACOVA_05168 0.13 -0.8 654,560 + BACOVA_05168 0.13 +0.3 654,721 + BACOVA_05168 0.33 +1.3 654,775 + BACOVA_05168 0.40 -1.9 654,803 + BACOVA_05168 0.43 +1.3 654,814 - BACOVA_05168 0.45 -0.3 654,847 + BACOVA_05168 0.49 -0.2 654,847 + BACOVA_05168 0.49 -1.3 654,847 + BACOVA_05168 0.49 +0.3 654,848 - BACOVA_05168 0.49 +0.3 654,848 - BACOVA_05168 0.49 -0.0 654,848 - BACOVA_05168 0.49 -2.7 654,848 - BACOVA_05168 0.49 +0.5 654,855 + BACOVA_05168 0.50 -0.5 654,856 - BACOVA_05168 0.50 +1.3 655,023 + BACOVA_05168 0.71 +0.2 655,023 + BACOVA_05168 0.71 +0.9 655,023 + BACOVA_05168 0.71 -1.5 655,024 - BACOVA_05168 0.71 -0.7 655,028 + BACOVA_05168 0.72 -0.4 655,048 + BACOVA_05168 0.75 -1.6 655,048 + BACOVA_05168 0.75 +0.5 655,049 - BACOVA_05168 0.75 -1.0 655,113 - BACOVA_05168 0.83 -0.3 655,123 + BACOVA_05168 0.84 -2.3 655,123 + BACOVA_05168 0.84 -0.5 655,248 + -0.9 655,248 + +2.9 655,249 - -2.0 655,249 - -0.6 655,291 + -0.9 655,303 + -0.1 655,304 - +0.5 655,307 - -0.8 655,336 + +0.3 655,336 + +0.8 655,364 + BACOVA_05169 0.10 +0.3 655,366 + BACOVA_05169 0.11 +0.1 655,401 - BACOVA_05169 0.14 -0.6 655,401 - BACOVA_05169 0.14 +0.3 655,416 - BACOVA_05169 0.16 +1.0 655,416 - BACOVA_05169 0.16 -0.6 655,478 + BACOVA_05169 0.22 -1.3 655,538 + BACOVA_05169 0.28 -0.4 655,621 - BACOVA_05169 0.37 +0.3 655,624 + BACOVA_05169 0.37 +1.3 655,625 - BACOVA_05169 0.37 -0.3 655,650 - BACOVA_05169 0.40 -0.9 655,650 - BACOVA_05169 0.40 -2.4 655,650 - BACOVA_05169 0.40 -0.7 655,662 - BACOVA_05169 0.41 -0.3 655,732 + BACOVA_05169 0.48 +0.3 655,810 - BACOVA_05169 0.56 +0.3 655,849 + BACOVA_05169 0.60 -2.2 655,894 + BACOVA_05169 0.64 +3.3 655,895 - BACOVA_05169 0.64 -0.1 655,905 + BACOVA_05169 0.65 +0.3 655,906 - BACOVA_05169 0.66 -0.5 655,908 - BACOVA_05169 0.66 +0.5 655,944 - BACOVA_05169 0.69 -1.7 655,950 + BACOVA_05169 0.70 -1.1 655,951 + BACOVA_05169 0.70 -0.7 655,991 + BACOVA_05169 0.74 -0.0 656,012 + BACOVA_05169 0.76 +0.7 656,020 + BACOVA_05169 0.77 +1.0 656,021 - BACOVA_05169 0.77 -1.1 656,024 + BACOVA_05169 0.78 +0.5 656,024 + BACOVA_05169 0.78 +1.3 656,082 + BACOVA_05169 0.83 -3.1 656,097 - BACOVA_05169 0.85 +0.4 656,097 - BACOVA_05169 0.85 -0.1 656,109 + BACOVA_05169 0.86 +0.5 656,127 + BACOVA_05169 0.88 +0.3 656,127 + BACOVA_05169 0.88 +1.3 656,128 - BACOVA_05169 0.88 +0.2 656,128 - BACOVA_05169 0.88 +0.3 656,137 - BACOVA_05169 0.89 -1.4 656,137 - BACOVA_05169 0.89 +0.5 656,140 + BACOVA_05169 0.89 +0.0 656,141 - BACOVA_05169 0.89 -1.7 656,141 - BACOVA_05169 0.89 +1.5 656,164 + -1.1 656,204 - -0.4 656,219 - -0.6
Or see this region's nucleotide sequence