Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05147

Experiment: Pectin from apple; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05146 and BACOVA_05147 are separated by 99 nucleotidesBACOVA_05147 and BACOVA_05148 are separated by 18 nucleotides BACOVA_05146: BACOVA_05146 - antioxidant, AhpC/TSA family, at 623,674 to 624,681 _05146 BACOVA_05147: BACOVA_05147 - hypothetical protein, at 624,781 to 625,872 _05147 BACOVA_05148: BACOVA_05148 - SusD family protein, at 625,891 to 627,453 _05148 Position (kb) 624 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 623.952 kb on + strand, within BACOVA_05146at 623.954 kb on + strand, within BACOVA_05146at 623.954 kb on + strand, within BACOVA_05146at 623.955 kb on - strand, within BACOVA_05146at 623.955 kb on - strand, within BACOVA_05146at 623.956 kb on + strand, within BACOVA_05146at 623.956 kb on + strand, within BACOVA_05146at 623.956 kb on + strand, within BACOVA_05146at 623.957 kb on - strand, within BACOVA_05146at 624.046 kb on + strand, within BACOVA_05146at 624.052 kb on + strand, within BACOVA_05146at 624.081 kb on + strand, within BACOVA_05146at 624.128 kb on - strand, within BACOVA_05146at 624.184 kb on - strand, within BACOVA_05146at 624.184 kb on - strand, within BACOVA_05146at 624.318 kb on + strand, within BACOVA_05146at 624.319 kb on - strand, within BACOVA_05146at 624.321 kb on - strand, within BACOVA_05146at 624.405 kb on + strand, within BACOVA_05146at 624.408 kb on + strand, within BACOVA_05146at 624.408 kb on + strand, within BACOVA_05146at 624.418 kb on - strand, within BACOVA_05146at 624.454 kb on - strand, within BACOVA_05146at 624.462 kb on + strand, within BACOVA_05146at 624.462 kb on + strand, within BACOVA_05146at 624.462 kb on + strand, within BACOVA_05146at 624.463 kb on - strand, within BACOVA_05146at 624.464 kb on + strand, within BACOVA_05146at 624.465 kb on - strand, within BACOVA_05146at 624.466 kb on + strand, within BACOVA_05146at 624.467 kb on - strand, within BACOVA_05146at 624.467 kb on - strand, within BACOVA_05146at 624.485 kb on + strand, within BACOVA_05146at 624.556 kb on + strand, within BACOVA_05146at 624.562 kb on + strand, within BACOVA_05146at 624.563 kb on - strand, within BACOVA_05146at 624.563 kb on - strand, within BACOVA_05146at 624.567 kb on + strand, within BACOVA_05146at 624.568 kb on - strand, within BACOVA_05146at 624.576 kb on + strand, within BACOVA_05146at 624.577 kb on - strand, within BACOVA_05146at 624.652 kb on + strandat 624.653 kb on - strandat 624.655 kb on + strandat 624.656 kb on - strandat 624.656 kb on - strandat 624.656 kb on - strandat 624.673 kb on + strandat 624.685 kb on - strandat 624.694 kb on + strandat 624.699 kb on + strandat 624.699 kb on + strandat 624.700 kb on - strandat 624.701 kb on + strandat 624.718 kb on + strandat 624.736 kb on + strandat 624.741 kb on - strandat 624.761 kb on - strandat 624.782 kb on + strandat 624.842 kb on + strandat 624.894 kb on + strand, within BACOVA_05147at 624.894 kb on + strand, within BACOVA_05147at 624.919 kb on + strand, within BACOVA_05147at 624.933 kb on + strand, within BACOVA_05147at 624.937 kb on - strand, within BACOVA_05147at 624.988 kb on - strand, within BACOVA_05147at 625.004 kb on - strand, within BACOVA_05147at 625.062 kb on + strand, within BACOVA_05147at 625.065 kb on + strand, within BACOVA_05147at 625.111 kb on - strand, within BACOVA_05147at 625.215 kb on + strand, within BACOVA_05147at 625.239 kb on + strand, within BACOVA_05147at 625.252 kb on + strand, within BACOVA_05147at 625.272 kb on + strand, within BACOVA_05147at 625.328 kb on + strand, within BACOVA_05147at 625.328 kb on + strand, within BACOVA_05147at 625.363 kb on + strand, within BACOVA_05147at 625.405 kb on + strand, within BACOVA_05147at 625.410 kb on - strand, within BACOVA_05147at 625.410 kb on - strand, within BACOVA_05147at 625.413 kb on - strand, within BACOVA_05147at 625.458 kb on - strand, within BACOVA_05147at 625.466 kb on + strand, within BACOVA_05147at 625.467 kb on - strand, within BACOVA_05147at 625.472 kb on + strand, within BACOVA_05147at 625.473 kb on - strand, within BACOVA_05147at 625.483 kb on + strand, within BACOVA_05147at 625.519 kb on + strand, within BACOVA_05147at 625.519 kb on + strand, within BACOVA_05147at 625.519 kb on + strand, within BACOVA_05147at 625.520 kb on - strand, within BACOVA_05147at 625.521 kb on + strand, within BACOVA_05147at 625.522 kb on - strand, within BACOVA_05147at 625.539 kb on + strand, within BACOVA_05147at 625.544 kb on + strand, within BACOVA_05147at 625.545 kb on - strand, within BACOVA_05147at 625.644 kb on + strand, within BACOVA_05147at 625.650 kb on + strand, within BACOVA_05147at 625.651 kb on - strand, within BACOVA_05147at 625.652 kb on + strand, within BACOVA_05147at 625.652 kb on + strand, within BACOVA_05147at 625.658 kb on - strand, within BACOVA_05147at 625.784 kb on + strandat 625.785 kb on - strandat 625.813 kb on + strandat 625.822 kb on + strandat 625.822 kb on + strandat 625.823 kb on - strandat 625.829 kb on + strandat 625.829 kb on + strandat 625.829 kb on + strandat 625.832 kb on - strandat 625.888 kb on + strandat 625.889 kb on - strandat 625.949 kb on - strandat 625.977 kb on + strandat 625.978 kb on - strandat 625.978 kb on - strandat 625.978 kb on - strandat 625.978 kb on - strandat 625.981 kb on + strandat 625.984 kb on + strandat 625.984 kb on + strandat 626.041 kb on + strandat 626.065 kb on + strand, within BACOVA_05148at 626.065 kb on + strand, within BACOVA_05148at 626.130 kb on + strand, within BACOVA_05148at 626.130 kb on + strand, within BACOVA_05148at 626.164 kb on + strand, within BACOVA_05148at 626.164 kb on + strand, within BACOVA_05148at 626.180 kb on + strand, within BACOVA_05148at 626.181 kb on - strand, within BACOVA_05148at 626.182 kb on + strand, within BACOVA_05148at 626.214 kb on + strand, within BACOVA_05148at 626.256 kb on - strand, within BACOVA_05148at 626.256 kb on - strand, within BACOVA_05148at 626.297 kb on + strand, within BACOVA_05148at 626.298 kb on - strand, within BACOVA_05148at 626.357 kb on + strand, within BACOVA_05148at 626.358 kb on - strand, within BACOVA_05148at 626.361 kb on + strand, within BACOVA_05148at 626.364 kb on + strand, within BACOVA_05148at 626.366 kb on + strand, within BACOVA_05148at 626.397 kb on + strand, within BACOVA_05148at 626.404 kb on + strand, within BACOVA_05148at 626.419 kb on - strand, within BACOVA_05148at 626.421 kb on - strand, within BACOVA_05148at 626.457 kb on + strand, within BACOVA_05148at 626.494 kb on - strand, within BACOVA_05148at 626.524 kb on - strand, within BACOVA_05148at 626.534 kb on + strand, within BACOVA_05148at 626.535 kb on - strand, within BACOVA_05148at 626.555 kb on - strand, within BACOVA_05148at 626.565 kb on - strand, within BACOVA_05148at 626.591 kb on + strand, within BACOVA_05148at 626.592 kb on - strand, within BACOVA_05148at 626.605 kb on - strand, within BACOVA_05148at 626.606 kb on + strand, within BACOVA_05148at 626.607 kb on - strand, within BACOVA_05148at 626.610 kb on - strand, within BACOVA_05148at 626.696 kb on + strand, within BACOVA_05148at 626.726 kb on + strand, within BACOVA_05148at 626.760 kb on + strand, within BACOVA_05148at 626.761 kb on - strand, within BACOVA_05148at 626.761 kb on - strand, within BACOVA_05148at 626.764 kb on + strand, within BACOVA_05148at 626.789 kb on + strand, within BACOVA_05148at 626.790 kb on - strand, within BACOVA_05148at 626.790 kb on - strand, within BACOVA_05148at 626.790 kb on - strand, within BACOVA_05148at 626.836 kb on + strand, within BACOVA_05148at 626.858 kb on + strand, within BACOVA_05148at 626.858 kb on + strand, within BACOVA_05148at 626.860 kb on + strand, within BACOVA_05148

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C)
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623,952 + BACOVA_05146 0.28 -0.2
623,954 + BACOVA_05146 0.28 -1.2
623,954 + BACOVA_05146 0.28 -1.2
623,955 - BACOVA_05146 0.28 +1.3
623,955 - BACOVA_05146 0.28 -0.7
623,956 + BACOVA_05146 0.28 +0.1
623,956 + BACOVA_05146 0.28 +0.2
623,956 + BACOVA_05146 0.28 +0.7
623,957 - BACOVA_05146 0.28 -0.1
624,046 + BACOVA_05146 0.37 -0.7
624,052 + BACOVA_05146 0.38 +0.1
624,081 + BACOVA_05146 0.40 +2.0
624,128 - BACOVA_05146 0.45 -2.3
624,184 - BACOVA_05146 0.51 +1.3
624,184 - BACOVA_05146 0.51 -0.7
624,318 + BACOVA_05146 0.64 +1.7
624,319 - BACOVA_05146 0.64 -0.4
624,321 - BACOVA_05146 0.64 +0.6
624,405 + BACOVA_05146 0.73 -0.4
624,408 + BACOVA_05146 0.73 -1.0
624,408 + BACOVA_05146 0.73 +1.7
624,418 - BACOVA_05146 0.74 +0.3
624,454 - BACOVA_05146 0.77 -2.0
624,462 + BACOVA_05146 0.78 +0.6
624,462 + BACOVA_05146 0.78 -1.3
624,462 + BACOVA_05146 0.78 -0.7
624,463 - BACOVA_05146 0.78 -0.8
624,464 + BACOVA_05146 0.78 -0.7
624,465 - BACOVA_05146 0.78 -1.0
624,466 + BACOVA_05146 0.79 +0.3
624,467 - BACOVA_05146 0.79 -2.0
624,467 - BACOVA_05146 0.79 -0.9
624,485 + BACOVA_05146 0.80 -0.7
624,556 + BACOVA_05146 0.88 -0.3
624,562 + BACOVA_05146 0.88 +1.7
624,563 - BACOVA_05146 0.88 +0.4
624,563 - BACOVA_05146 0.88 +1.3
624,567 + BACOVA_05146 0.89 +2.1
624,568 - BACOVA_05146 0.89 +0.9
624,576 + BACOVA_05146 0.89 -0.3
624,577 - BACOVA_05146 0.90 +0.2
624,652 + +0.2
624,653 - +1.1
624,655 + -0.6
624,656 - -0.2
624,656 - -1.0
624,656 - -0.6
624,673 + +1.7
624,685 - +1.5
624,694 + -0.3
624,699 + +1.3
624,699 + +2.2
624,700 - +0.6
624,701 + -0.0
624,718 + +1.0
624,736 + -0.1
624,741 - -0.7
624,761 - -1.5
624,782 + -0.1
624,842 + +0.6
624,894 + BACOVA_05147 0.10 +1.3
624,894 + BACOVA_05147 0.10 +1.0
624,919 + BACOVA_05147 0.13 +1.5
624,933 + BACOVA_05147 0.14 +0.6
624,937 - BACOVA_05147 0.14 +0.3
624,988 - BACOVA_05147 0.19 -3.1
625,004 - BACOVA_05147 0.20 -1.0
625,062 + BACOVA_05147 0.26 +0.5
625,065 + BACOVA_05147 0.26 -0.1
625,111 - BACOVA_05147 0.30 +0.7
625,215 + BACOVA_05147 0.40 +1.0
625,239 + BACOVA_05147 0.42 +0.6
625,252 + BACOVA_05147 0.43 -0.1
625,272 + BACOVA_05147 0.45 +0.7
625,328 + BACOVA_05147 0.50 -0.1
625,328 + BACOVA_05147 0.50 -0.2
625,363 + BACOVA_05147 0.53 +0.6
625,405 + BACOVA_05147 0.57 +0.5
625,410 - BACOVA_05147 0.58 +0.1
625,410 - BACOVA_05147 0.58 +1.3
625,413 - BACOVA_05147 0.58 -0.5
625,458 - BACOVA_05147 0.62 -1.3
625,466 + BACOVA_05147 0.63 +0.5
625,467 - BACOVA_05147 0.63 +1.3
625,472 + BACOVA_05147 0.63 -0.7
625,473 - BACOVA_05147 0.63 +1.3
625,483 + BACOVA_05147 0.64 -1.0
625,519 + BACOVA_05147 0.68 -0.4
625,519 + BACOVA_05147 0.68 +0.6
625,519 + BACOVA_05147 0.68 +0.8
625,520 - BACOVA_05147 0.68 +0.5
625,521 + BACOVA_05147 0.68 -1.3
625,522 - BACOVA_05147 0.68 -1.2
625,539 + BACOVA_05147 0.69 -0.6
625,544 + BACOVA_05147 0.70 +0.3
625,545 - BACOVA_05147 0.70 +0.7
625,644 + BACOVA_05147 0.79 +0.9
625,650 + BACOVA_05147 0.80 +1.3
625,651 - BACOVA_05147 0.80 -0.8
625,652 + BACOVA_05147 0.80 -0.1
625,652 + BACOVA_05147 0.80 +0.4
625,658 - BACOVA_05147 0.80 -0.1
625,784 + -0.1
625,785 - -1.3
625,813 + +0.9
625,822 + -1.0
625,822 + +0.5
625,823 - +0.2
625,829 + +0.1
625,829 + +0.1
625,829 + +0.3
625,832 - -1.4
625,888 + +0.1
625,889 - -1.3
625,949 - -0.2
625,977 + +0.4
625,978 - -1.4
625,978 - +0.9
625,978 - -0.3
625,978 - -0.3
625,981 + +1.2
625,984 + -0.5
625,984 + +0.8
626,041 + +0.3
626,065 + BACOVA_05148 0.11 -2.0
626,065 + BACOVA_05148 0.11 -0.2
626,130 + BACOVA_05148 0.15 -0.4
626,130 + BACOVA_05148 0.15 +0.7
626,164 + BACOVA_05148 0.17 +1.0
626,164 + BACOVA_05148 0.17 +1.0
626,180 + BACOVA_05148 0.18 -1.4
626,181 - BACOVA_05148 0.19 +1.3
626,182 + BACOVA_05148 0.19 -2.3
626,214 + BACOVA_05148 0.21 -0.2
626,256 - BACOVA_05148 0.23 -1.2
626,256 - BACOVA_05148 0.23 -0.3
626,297 + BACOVA_05148 0.26 +1.0
626,298 - BACOVA_05148 0.26 +1.0
626,357 + BACOVA_05148 0.30 -0.7
626,358 - BACOVA_05148 0.30 -0.3
626,361 + BACOVA_05148 0.30 -0.9
626,364 + BACOVA_05148 0.30 +0.7
626,366 + BACOVA_05148 0.30 -1.2
626,397 + BACOVA_05148 0.32 +0.7
626,404 + BACOVA_05148 0.33 -0.2
626,419 - BACOVA_05148 0.34 +0.2
626,421 - BACOVA_05148 0.34 +0.7
626,457 + BACOVA_05148 0.36 -0.7
626,494 - BACOVA_05148 0.39 +1.3
626,524 - BACOVA_05148 0.40 +0.3
626,534 + BACOVA_05148 0.41 +1.3
626,535 - BACOVA_05148 0.41 +0.6
626,555 - BACOVA_05148 0.42 +0.5
626,565 - BACOVA_05148 0.43 -1.0
626,591 + BACOVA_05148 0.45 -0.7
626,592 - BACOVA_05148 0.45 -1.0
626,605 - BACOVA_05148 0.46 -0.5
626,606 + BACOVA_05148 0.46 -0.7
626,607 - BACOVA_05148 0.46 -1.9
626,610 - BACOVA_05148 0.46 +1.3
626,696 + BACOVA_05148 0.52 +0.0
626,726 + BACOVA_05148 0.53 -0.5
626,760 + BACOVA_05148 0.56 -0.4
626,761 - BACOVA_05148 0.56 +1.6
626,761 - BACOVA_05148 0.56 -0.4
626,764 + BACOVA_05148 0.56 -1.3
626,789 + BACOVA_05148 0.57 -0.8
626,790 - BACOVA_05148 0.58 +0.1
626,790 - BACOVA_05148 0.58 -0.8
626,790 - BACOVA_05148 0.58 +1.3
626,836 + BACOVA_05148 0.60 -0.7
626,858 + BACOVA_05148 0.62 -0.8
626,858 + BACOVA_05148 0.62 -1.2
626,860 + BACOVA_05148 0.62 +0.5

Or see this region's nucleotide sequence