Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04971

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04968 and BACOVA_04969 are separated by 102 nucleotidesBACOVA_04969 and BACOVA_04970 are separated by 130 nucleotidesBACOVA_04970 and BACOVA_04971 are separated by 84 nucleotidesBACOVA_04971 and BACOVA_04972 are separated by 72 nucleotides BACOVA_04968: BACOVA_04968 - hypothetical protein, at 414,438 to 416,198 _04968 BACOVA_04969: BACOVA_04969 - hypothetical protein, at 416,301 to 416,405 _04969 BACOVA_04970: BACOVA_04970 - hypothetical protein, at 416,536 to 416,640 _04970 BACOVA_04971: BACOVA_04971 - hypothetical protein, at 416,725 to 416,838 _04971 BACOVA_04972: BACOVA_04972 - GDSL-like protein, at 416,911 to 418,545 _04972 Position (kb) 416 417Strain fitness (log2 ratio) -2 -1 0 1 2at 415.734 kb on + strand, within BACOVA_04968at 415.740 kb on + strand, within BACOVA_04968at 415.742 kb on + strand, within BACOVA_04968at 415.745 kb on - strand, within BACOVA_04968at 415.779 kb on + strand, within BACOVA_04968at 415.780 kb on - strand, within BACOVA_04968at 415.805 kb on - strand, within BACOVA_04968at 415.816 kb on + strand, within BACOVA_04968at 415.817 kb on - strand, within BACOVA_04968at 415.817 kb on - strand, within BACOVA_04968at 415.817 kb on - strand, within BACOVA_04968at 415.853 kb on - strand, within BACOVA_04968at 415.866 kb on - strand, within BACOVA_04968at 415.866 kb on - strand, within BACOVA_04968at 415.937 kb on + strand, within BACOVA_04968at 415.962 kb on + strand, within BACOVA_04968at 415.962 kb on + strand, within BACOVA_04968at 415.981 kb on + strand, within BACOVA_04968at 416.004 kb on + strand, within BACOVA_04968at 416.007 kb on + strand, within BACOVA_04968at 416.008 kb on - strand, within BACOVA_04968at 416.018 kb on - strand, within BACOVA_04968at 416.041 kb on - strandat 416.080 kb on + strandat 416.080 kb on + strandat 416.110 kb on + strandat 416.110 kb on + strandat 416.111 kb on - strandat 416.220 kb on - strandat 416.269 kb on + strandat 416.270 kb on - strandat 416.273 kb on - strandat 416.318 kb on + strand, within BACOVA_04969at 416.349 kb on - strand, within BACOVA_04969at 416.351 kb on - strand, within BACOVA_04969at 416.360 kb on + strand, within BACOVA_04969at 416.404 kb on - strandat 416.404 kb on - strandat 416.457 kb on + strandat 416.489 kb on + strandat 416.490 kb on - strandat 416.528 kb on + strandat 416.529 kb on - strandat 416.573 kb on + strand, within BACOVA_04970at 416.633 kb on - strandat 416.816 kb on + strand, within BACOVA_04971at 416.866 kb on - strandat 416.866 kb on - strandat 416.921 kb on + strandat 416.922 kb on - strandat 416.958 kb on + strandat 416.958 kb on + strandat 417.007 kb on - strandat 417.019 kb on - strandat 417.186 kb on + strand, within BACOVA_04972at 417.193 kb on + strand, within BACOVA_04972at 417.193 kb on + strand, within BACOVA_04972at 417.264 kb on - strand, within BACOVA_04972at 417.275 kb on + strand, within BACOVA_04972at 417.276 kb on - strand, within BACOVA_04972at 417.279 kb on + strand, within BACOVA_04972at 417.279 kb on + strand, within BACOVA_04972at 417.295 kb on + strand, within BACOVA_04972at 417.349 kb on + strand, within BACOVA_04972at 417.350 kb on - strand, within BACOVA_04972at 417.350 kb on - strand, within BACOVA_04972at 417.354 kb on + strand, within BACOVA_04972at 417.358 kb on - strand, within BACOVA_04972at 417.373 kb on - strand, within BACOVA_04972at 417.419 kb on + strand, within BACOVA_04972at 417.419 kb on + strand, within BACOVA_04972at 417.420 kb on - strand, within BACOVA_04972at 417.420 kb on - strand, within BACOVA_04972at 417.421 kb on + strand, within BACOVA_04972at 417.422 kb on - strand, within BACOVA_04972at 417.498 kb on + strand, within BACOVA_04972at 417.631 kb on + strand, within BACOVA_04972at 417.632 kb on - strand, within BACOVA_04972at 417.636 kb on + strand, within BACOVA_04972at 417.660 kb on - strand, within BACOVA_04972at 417.766 kb on - strand, within BACOVA_04972at 417.768 kb on - strand, within BACOVA_04972at 417.768 kb on - strand, within BACOVA_04972at 417.813 kb on + strand, within BACOVA_04972

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C)
remove
415,734 + BACOVA_04968 0.74 -1.0
415,740 + BACOVA_04968 0.74 +0.0
415,742 + BACOVA_04968 0.74 -0.9
415,745 - BACOVA_04968 0.74 +0.8
415,779 + BACOVA_04968 0.76 -0.8
415,780 - BACOVA_04968 0.76 -0.6
415,805 - BACOVA_04968 0.78 -0.2
415,816 + BACOVA_04968 0.78 +1.0
415,817 - BACOVA_04968 0.78 -0.6
415,817 - BACOVA_04968 0.78 +0.6
415,817 - BACOVA_04968 0.78 +0.9
415,853 - BACOVA_04968 0.80 +0.3
415,866 - BACOVA_04968 0.81 -0.7
415,866 - BACOVA_04968 0.81 +1.8
415,937 + BACOVA_04968 0.85 +0.7
415,962 + BACOVA_04968 0.87 -0.2
415,962 + BACOVA_04968 0.87 -0.9
415,981 + BACOVA_04968 0.88 -0.5
416,004 + BACOVA_04968 0.89 -2.5
416,007 + BACOVA_04968 0.89 -0.6
416,008 - BACOVA_04968 0.89 -0.7
416,018 - BACOVA_04968 0.90 +0.8
416,041 - -1.2
416,080 + -0.1
416,080 + -0.3
416,110 + +1.6
416,110 + -0.3
416,111 - -0.3
416,220 - -1.3
416,269 + -0.4
416,270 - +0.8
416,273 - -0.8
416,318 + BACOVA_04969 0.16 -0.7
416,349 - BACOVA_04969 0.46 +0.2
416,351 - BACOVA_04969 0.48 -0.3
416,360 + BACOVA_04969 0.56 +1.0
416,404 - -1.6
416,404 - +0.3
416,457 + -0.2
416,489 + +0.7
416,490 - -0.2
416,528 + -0.2
416,529 - +0.4
416,573 + BACOVA_04970 0.35 +0.5
416,633 - +0.1
416,816 + BACOVA_04971 0.80 +0.5
416,866 - -0.7
416,866 - +1.3
416,921 + -0.1
416,922 - -0.8
416,958 + +0.0
416,958 + -0.4
417,007 - -1.5
417,019 - +0.5
417,186 + BACOVA_04972 0.17 +0.5
417,193 + BACOVA_04972 0.17 -0.2
417,193 + BACOVA_04972 0.17 -0.2
417,264 - BACOVA_04972 0.22 +0.7
417,275 + BACOVA_04972 0.22 -1.1
417,276 - BACOVA_04972 0.22 -0.1
417,279 + BACOVA_04972 0.23 -0.5
417,279 + BACOVA_04972 0.23 +0.3
417,295 + BACOVA_04972 0.23 +0.8
417,349 + BACOVA_04972 0.27 -2.0
417,350 - BACOVA_04972 0.27 -0.8
417,350 - BACOVA_04972 0.27 -0.7
417,354 + BACOVA_04972 0.27 +0.5
417,358 - BACOVA_04972 0.27 -0.3
417,373 - BACOVA_04972 0.28 +0.5
417,419 + BACOVA_04972 0.31 -1.1
417,419 + BACOVA_04972 0.31 +0.5
417,420 - BACOVA_04972 0.31 +0.3
417,420 - BACOVA_04972 0.31 -0.5
417,421 + BACOVA_04972 0.31 +0.8
417,422 - BACOVA_04972 0.31 +1.1
417,498 + BACOVA_04972 0.36 -0.0
417,631 + BACOVA_04972 0.44 -1.0
417,632 - BACOVA_04972 0.44 -0.1
417,636 + BACOVA_04972 0.44 +0.5
417,660 - BACOVA_04972 0.46 +1.1
417,766 - BACOVA_04972 0.52 -0.4
417,768 - BACOVA_04972 0.52 +0.8
417,768 - BACOVA_04972 0.52 -0.1
417,813 + BACOVA_04972 0.55 +0.8

Or see this region's nucleotide sequence