Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04904 and BACOVA_04905 are separated by 144 nucleotides BACOVA_04905 and BACOVA_04906 are separated by 35 nucleotides
BACOVA_04904: BACOVA_04904 - response regulator receiver domain protein, at 303,434 to 307,969
_04904
BACOVA_04905: BACOVA_04905 - hypothetical protein, at 308,114 to 309,610
_04905
BACOVA_04906: BACOVA_04906 - hypothetical protein, at 309,646 to 311,307
_04906
Position (kb) 308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 307.159 kb on + strand, within BACOVA_04904 at 307.159 kb on + strand, within BACOVA_04904 at 307.171 kb on - strand, within BACOVA_04904 at 307.191 kb on + strand, within BACOVA_04904 at 307.191 kb on + strand, within BACOVA_04904 at 307.192 kb on - strand, within BACOVA_04904 at 307.231 kb on + strand, within BACOVA_04904 at 307.273 kb on + strand, within BACOVA_04904 at 307.354 kb on + strand, within BACOVA_04904 at 307.356 kb on + strand, within BACOVA_04904 at 307.356 kb on + strand, within BACOVA_04904 at 307.356 kb on + strand, within BACOVA_04904 at 307.357 kb on - strand, within BACOVA_04904 at 307.357 kb on - strand, within BACOVA_04904 at 307.357 kb on - strand, within BACOVA_04904 at 307.357 kb on - strand, within BACOVA_04904 at 307.357 kb on - strand, within BACOVA_04904 at 307.415 kb on + strand, within BACOVA_04904 at 307.432 kb on + strand, within BACOVA_04904 at 307.432 kb on + strand, within BACOVA_04904 at 307.454 kb on - strand, within BACOVA_04904 at 307.458 kb on - strand, within BACOVA_04904 at 307.522 kb on + strand at 307.522 kb on + strand at 307.535 kb on - strand at 307.535 kb on - strand at 307.535 kb on - strand at 307.535 kb on - strand at 307.541 kb on - strand at 307.541 kb on - strand at 307.618 kb on + strand at 307.711 kb on - strand at 307.834 kb on - strand at 307.836 kb on + strand at 307.855 kb on + strand at 307.856 kb on - strand at 307.871 kb on + strand at 307.873 kb on + strand at 307.873 kb on + strand at 307.899 kb on - strand at 307.939 kb on + strand at 307.974 kb on - strand at 307.974 kb on - strand at 307.989 kb on + strand at 308.037 kb on + strand at 308.044 kb on - strand at 308.044 kb on - strand at 308.070 kb on + strand at 308.128 kb on - strand at 308.129 kb on + strand at 308.129 kb on + strand at 308.129 kb on + strand at 308.130 kb on - strand at 308.152 kb on + strand at 308.152 kb on + strand at 308.153 kb on - strand at 308.154 kb on + strand at 308.170 kb on + strand at 308.170 kb on + strand at 308.170 kb on + strand at 308.183 kb on + strand at 308.183 kb on + strand at 308.189 kb on - strand at 308.221 kb on + strand at 308.254 kb on + strand at 308.255 kb on - strand at 308.270 kb on - strand, within BACOVA_04905 at 308.293 kb on + strand, within BACOVA_04905 at 308.296 kb on - strand, within BACOVA_04905 at 308.313 kb on - strand, within BACOVA_04905 at 308.364 kb on + strand, within BACOVA_04905 at 308.365 kb on - strand, within BACOVA_04905 at 308.368 kb on + strand, within BACOVA_04905 at 308.369 kb on - strand, within BACOVA_04905 at 308.370 kb on + strand, within BACOVA_04905 at 308.370 kb on + strand, within BACOVA_04905 at 308.408 kb on + strand, within BACOVA_04905 at 308.458 kb on - strand, within BACOVA_04905 at 308.486 kb on - strand, within BACOVA_04905 at 308.520 kb on - strand, within BACOVA_04905 at 308.520 kb on - strand, within BACOVA_04905 at 308.563 kb on - strand, within BACOVA_04905 at 308.586 kb on + strand, within BACOVA_04905 at 308.586 kb on + strand, within BACOVA_04905 at 308.627 kb on - strand, within BACOVA_04905 at 308.637 kb on + strand, within BACOVA_04905 at 308.638 kb on - strand, within BACOVA_04905 at 308.642 kb on - strand, within BACOVA_04905 at 308.653 kb on - strand, within BACOVA_04905 at 308.657 kb on + strand, within BACOVA_04905 at 308.657 kb on + strand, within BACOVA_04905 at 308.657 kb on + strand, within BACOVA_04905 at 308.658 kb on - strand, within BACOVA_04905 at 308.677 kb on + strand, within BACOVA_04905 at 308.678 kb on - strand, within BACOVA_04905 at 308.758 kb on + strand, within BACOVA_04905 at 308.768 kb on - strand, within BACOVA_04905 at 308.768 kb on - strand, within BACOVA_04905 at 308.802 kb on + strand, within BACOVA_04905 at 308.802 kb on + strand, within BACOVA_04905 at 308.803 kb on - strand, within BACOVA_04905 at 308.803 kb on - strand, within BACOVA_04905 at 308.803 kb on - strand, within BACOVA_04905 at 308.803 kb on - strand, within BACOVA_04905 at 308.824 kb on + strand, within BACOVA_04905 at 308.824 kb on + strand, within BACOVA_04905 at 308.824 kb on + strand, within BACOVA_04905 at 308.825 kb on - strand, within BACOVA_04905 at 308.844 kb on - strand, within BACOVA_04905 at 308.875 kb on + strand, within BACOVA_04905 at 308.876 kb on - strand, within BACOVA_04905 at 308.930 kb on - strand, within BACOVA_04905 at 308.930 kb on - strand, within BACOVA_04905 at 308.941 kb on + strand, within BACOVA_04905 at 308.962 kb on + strand, within BACOVA_04905 at 308.963 kb on - strand, within BACOVA_04905 at 309.101 kb on + strand, within BACOVA_04905 at 309.102 kb on - strand, within BACOVA_04905 at 309.106 kb on + strand, within BACOVA_04905 at 309.197 kb on + strand, within BACOVA_04905 at 309.197 kb on + strand, within BACOVA_04905 at 309.197 kb on + strand, within BACOVA_04905 at 309.197 kb on + strand, within BACOVA_04905 at 309.198 kb on - strand, within BACOVA_04905 at 309.215 kb on - strand, within BACOVA_04905 at 309.296 kb on + strand, within BACOVA_04905 at 309.365 kb on + strand, within BACOVA_04905 at 309.409 kb on + strand, within BACOVA_04905 at 309.417 kb on + strand, within BACOVA_04905 at 309.420 kb on - strand, within BACOVA_04905 at 309.420 kb on - strand, within BACOVA_04905 at 309.420 kb on - strand, within BACOVA_04905 at 309.445 kb on + strand, within BACOVA_04905 at 309.445 kb on + strand, within BACOVA_04905 at 309.507 kb on + strand at 309.575 kb on + strand at 309.594 kb on - strand at 309.596 kb on + strand at 309.599 kb on - strand at 309.614 kb on + strand at 309.639 kb on - strand at 309.642 kb on - strand at 309.652 kb on + strand at 309.652 kb on + strand at 309.654 kb on + strand at 309.654 kb on + strand at 309.654 kb on + strand at 309.679 kb on + strand at 309.680 kb on - strand at 309.729 kb on - strand at 309.729 kb on - strand at 309.791 kb on + strand at 309.792 kb on - strand at 309.792 kb on - strand at 309.792 kb on - strand at 309.806 kb on + strand at 309.883 kb on + strand, within BACOVA_04906 at 309.889 kb on + strand, within BACOVA_04906 at 310.041 kb on - strand, within BACOVA_04906 at 310.102 kb on + strand, within BACOVA_04906 at 310.116 kb on + strand, within BACOVA_04906 at 310.138 kb on + strand, within BACOVA_04906 at 310.138 kb on + strand, within BACOVA_04906 at 310.227 kb on + strand, within BACOVA_04906 at 310.228 kb on - strand, within BACOVA_04906 at 310.243 kb on + strand, within BACOVA_04906 at 310.327 kb on + strand, within BACOVA_04906 at 310.327 kb on + strand, within BACOVA_04906 at 310.327 kb on + strand, within BACOVA_04906 at 310.327 kb on + strand, within BACOVA_04906 at 310.328 kb on - strand, within BACOVA_04906 at 310.328 kb on - strand, within BACOVA_04906 at 310.328 kb on - strand, within BACOVA_04906 at 310.365 kb on + strand, within BACOVA_04906 at 310.397 kb on + strand, within BACOVA_04906 at 310.398 kb on - strand, within BACOVA_04906 at 310.398 kb on - strand, within BACOVA_04906 at 310.439 kb on + strand, within BACOVA_04906 at 310.517 kb on - strand, within BACOVA_04906 at 310.517 kb on - strand, within BACOVA_04906 at 310.521 kb on + strand, within BACOVA_04906 at 310.521 kb on + strand, within BACOVA_04906 at 310.521 kb on + strand, within BACOVA_04906 at 310.522 kb on - strand, within BACOVA_04906 at 310.522 kb on - strand, within BACOVA_04906 at 310.522 kb on - strand, within BACOVA_04906 at 310.524 kb on + strand, within BACOVA_04906 at 310.524 kb on + strand, within BACOVA_04906 at 310.525 kb on - strand, within BACOVA_04906 at 310.576 kb on - strand, within BACOVA_04906 at 310.592 kb on + strand, within BACOVA_04906
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 307,159 + BACOVA_04904 0.82 +2.4 307,159 + BACOVA_04904 0.82 +1.9 307,171 - BACOVA_04904 0.82 +2.2 307,191 + BACOVA_04904 0.83 +2.1 307,191 + BACOVA_04904 0.83 +2.0 307,192 - BACOVA_04904 0.83 -2.1 307,231 + BACOVA_04904 0.84 +0.2 307,273 + BACOVA_04904 0.85 +0.4 307,354 + BACOVA_04904 0.86 +0.6 307,356 + BACOVA_04904 0.86 -0.6 307,356 + BACOVA_04904 0.86 +1.2 307,356 + BACOVA_04904 0.86 +0.8 307,357 - BACOVA_04904 0.86 +1.2 307,357 - BACOVA_04904 0.86 +1.2 307,357 - BACOVA_04904 0.86 +0.7 307,357 - BACOVA_04904 0.86 +1.7 307,357 - BACOVA_04904 0.86 +1.3 307,415 + BACOVA_04904 0.88 +2.1 307,432 + BACOVA_04904 0.88 +1.2 307,432 + BACOVA_04904 0.88 +0.8 307,454 - BACOVA_04904 0.89 +1.2 307,458 - BACOVA_04904 0.89 +1.7 307,522 + +0.3 307,522 + -1.1 307,535 - +0.7 307,535 - +1.9 307,535 - +1.1 307,535 - +0.5 307,541 - +1.1 307,541 - +1.4 307,618 + +1.7 307,711 - +1.0 307,834 - +0.9 307,836 + +2.1 307,855 + +1.7 307,856 - +1.4 307,871 + +1.0 307,873 + +1.5 307,873 + +0.7 307,899 - +1.0 307,939 + +1.5 307,974 - -0.8 307,974 - -0.4 307,989 + -0.5 308,037 + +0.9 308,044 - +1.2 308,044 - +0.7 308,070 + -1.1 308,128 - +1.2 308,129 + -0.1 308,129 + -1.4 308,129 + -0.8 308,130 - +0.1 308,152 + -0.4 308,152 + -1.0 308,153 - +0.0 308,154 + -0.7 308,170 + -1.1 308,170 + +1.1 308,170 + -0.8 308,183 + +0.4 308,183 + +0.6 308,189 - -0.1 308,221 + +1.2 308,254 + -0.8 308,255 - -0.6 308,270 - BACOVA_04905 0.10 +0.1 308,293 + BACOVA_04905 0.12 -0.1 308,296 - BACOVA_04905 0.12 +0.2 308,313 - BACOVA_04905 0.13 -1.0 308,364 + BACOVA_04905 0.17 +0.4 308,365 - BACOVA_04905 0.17 -0.4 308,368 + BACOVA_04905 0.17 -1.2 308,369 - BACOVA_04905 0.17 -0.4 308,370 + BACOVA_04905 0.17 +0.6 308,370 + BACOVA_04905 0.17 +1.2 308,408 + BACOVA_04905 0.20 -0.1 308,458 - BACOVA_04905 0.23 +0.5 308,486 - BACOVA_04905 0.25 -0.6 308,520 - BACOVA_04905 0.27 -0.3 308,520 - BACOVA_04905 0.27 +0.7 308,563 - BACOVA_04905 0.30 -0.1 308,586 + BACOVA_04905 0.32 -1.3 308,586 + BACOVA_04905 0.32 +0.8 308,627 - BACOVA_04905 0.34 +0.4 308,637 + BACOVA_04905 0.35 +0.6 308,638 - BACOVA_04905 0.35 +0.3 308,642 - BACOVA_04905 0.35 -0.5 308,653 - BACOVA_04905 0.36 -0.0 308,657 + BACOVA_04905 0.36 +1.0 308,657 + BACOVA_04905 0.36 +0.1 308,657 + BACOVA_04905 0.36 +2.0 308,658 - BACOVA_04905 0.36 -0.2 308,677 + BACOVA_04905 0.38 +0.5 308,678 - BACOVA_04905 0.38 +0.7 308,758 + BACOVA_04905 0.43 +0.6 308,768 - BACOVA_04905 0.44 -0.1 308,768 - BACOVA_04905 0.44 +0.6 308,802 + BACOVA_04905 0.46 -0.4 308,802 + BACOVA_04905 0.46 +0.5 308,803 - BACOVA_04905 0.46 +0.7 308,803 - BACOVA_04905 0.46 +1.8 308,803 - BACOVA_04905 0.46 -0.1 308,803 - BACOVA_04905 0.46 -0.2 308,824 + BACOVA_04905 0.47 -1.0 308,824 + BACOVA_04905 0.47 -1.2 308,824 + BACOVA_04905 0.47 +1.0 308,825 - BACOVA_04905 0.47 -1.6 308,844 - BACOVA_04905 0.49 +0.9 308,875 + BACOVA_04905 0.51 +1.0 308,876 - BACOVA_04905 0.51 -0.8 308,930 - BACOVA_04905 0.55 -0.9 308,930 - BACOVA_04905 0.55 +0.7 308,941 + BACOVA_04905 0.55 +1.0 308,962 + BACOVA_04905 0.57 +1.4 308,963 - BACOVA_04905 0.57 -2.6 309,101 + BACOVA_04905 0.66 -0.0 309,102 - BACOVA_04905 0.66 -2.0 309,106 + BACOVA_04905 0.66 -1.5 309,197 + BACOVA_04905 0.72 -2.6 309,197 + BACOVA_04905 0.72 -0.3 309,197 + BACOVA_04905 0.72 -0.0 309,197 + BACOVA_04905 0.72 -0.6 309,198 - BACOVA_04905 0.72 -0.2 309,215 - BACOVA_04905 0.74 -0.4 309,296 + BACOVA_04905 0.79 -0.9 309,365 + BACOVA_04905 0.84 -0.4 309,409 + BACOVA_04905 0.87 +0.2 309,417 + BACOVA_04905 0.87 +0.1 309,420 - BACOVA_04905 0.87 -0.0 309,420 - BACOVA_04905 0.87 -0.5 309,420 - BACOVA_04905 0.87 +0.6 309,445 + BACOVA_04905 0.89 -0.4 309,445 + BACOVA_04905 0.89 +2.0 309,507 + +1.4 309,575 + -2.0 309,594 - +0.2 309,596 + -0.4 309,599 - +0.2 309,614 + -0.5 309,639 - -1.4 309,642 - -1.1 309,652 + -1.3 309,652 + -0.1 309,654 + +0.4 309,654 + +0.8 309,654 + -0.4 309,679 + +0.6 309,680 - -3.3 309,729 - -1.0 309,729 - +0.7 309,791 + +0.7 309,792 - -0.2 309,792 - +1.8 309,792 - +0.8 309,806 + +0.8 309,883 + BACOVA_04906 0.14 -0.5 309,889 + BACOVA_04906 0.15 -0.3 310,041 - BACOVA_04906 0.24 -1.4 310,102 + BACOVA_04906 0.27 -1.4 310,116 + BACOVA_04906 0.28 -0.1 310,138 + BACOVA_04906 0.30 -1.4 310,138 + BACOVA_04906 0.30 +0.6 310,227 + BACOVA_04906 0.35 +0.2 310,228 - BACOVA_04906 0.35 +2.6 310,243 + BACOVA_04906 0.36 +0.1 310,327 + BACOVA_04906 0.41 -0.4 310,327 + BACOVA_04906 0.41 -0.6 310,327 + BACOVA_04906 0.41 -1.0 310,327 + BACOVA_04906 0.41 -0.6 310,328 - BACOVA_04906 0.41 +1.2 310,328 - BACOVA_04906 0.41 +0.5 310,328 - BACOVA_04906 0.41 -0.7 310,365 + BACOVA_04906 0.43 -0.5 310,397 + BACOVA_04906 0.45 +1.2 310,398 - BACOVA_04906 0.45 +0.0 310,398 - BACOVA_04906 0.45 +1.2 310,439 + BACOVA_04906 0.48 +0.6 310,517 - BACOVA_04906 0.52 -1.4 310,517 - BACOVA_04906 0.52 -2.6 310,521 + BACOVA_04906 0.53 +1.6 310,521 + BACOVA_04906 0.53 -0.6 310,521 + BACOVA_04906 0.53 -0.0 310,522 - BACOVA_04906 0.53 -0.1 310,522 - BACOVA_04906 0.53 +0.7 310,522 - BACOVA_04906 0.53 +0.5 310,524 + BACOVA_04906 0.53 -0.3 310,524 + BACOVA_04906 0.53 +1.0 310,525 - BACOVA_04906 0.53 +0.3 310,576 - BACOVA_04906 0.56 +0.2 310,592 + BACOVA_04906 0.57 -1.7
Or see this region's nucleotide sequence