Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04067

Experiment: Pectin from apple; filtered 1 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04065 and BACOVA_04066 are separated by 98 nucleotidesBACOVA_04066 and BACOVA_04067 are separated by 215 nucleotidesBACOVA_04067 and BACOVA_04068 are separated by 112 nucleotidesBACOVA_04068 and BACOVA_04069 are separated by 3 nucleotides BACOVA_04065: BACOVA_04065 - hypothetical protein, at 396,835 to 397,059 _04065 BACOVA_04066: BACOVA_04066 - hypothetical protein, at 397,158 to 397,295 _04066 BACOVA_04067: BACOVA_04067 - hypothetical protein, at 397,511 to 397,918 _04067 BACOVA_04068: BACOVA_04068 - hypothetical protein, at 398,031 to 398,438 _04068 BACOVA_04069: BACOVA_04069 - phosphoadenosine phosphosulfate reductase family protein, at 398,442 to 399,746 _04069 Position (kb) 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 396.527 kb on + strandat 396.528 kb on - strandat 396.684 kb on + strandat 396.710 kb on - strandat 396.824 kb on + strandat 396.830 kb on - strandat 396.832 kb on + strandat 396.861 kb on + strand, within BACOVA_04065at 396.861 kb on + strand, within BACOVA_04065at 396.874 kb on - strand, within BACOVA_04065at 397.035 kb on + strand, within BACOVA_04065at 397.036 kb on - strand, within BACOVA_04065at 397.077 kb on + strandat 397.077 kb on + strandat 397.078 kb on - strandat 397.079 kb on + strandat 397.124 kb on + strandat 397.125 kb on - strandat 397.211 kb on + strand, within BACOVA_04066at 397.273 kb on - strand, within BACOVA_04066at 397.310 kb on - strandat 397.365 kb on + strandat 397.370 kb on + strandat 397.381 kb on - strandat 397.447 kb on + strandat 397.478 kb on + strandat 397.479 kb on - strandat 397.479 kb on - strandat 397.479 kb on - strandat 397.490 kb on + strandat 397.490 kb on + strandat 397.490 kb on + strandat 397.491 kb on - strandat 397.492 kb on + strandat 397.493 kb on - strandat 397.495 kb on - strandat 397.495 kb on - strandat 397.495 kb on - strandat 397.510 kb on - strandat 397.524 kb on + strandat 397.524 kb on + strandat 397.525 kb on - strandat 397.565 kb on + strand, within BACOVA_04067at 397.566 kb on - strand, within BACOVA_04067at 397.588 kb on - strand, within BACOVA_04067at 397.643 kb on + strand, within BACOVA_04067at 397.669 kb on - strand, within BACOVA_04067at 397.678 kb on - strand, within BACOVA_04067at 397.709 kb on - strand, within BACOVA_04067at 397.731 kb on - strand, within BACOVA_04067at 397.787 kb on - strand, within BACOVA_04067at 397.857 kb on - strand, within BACOVA_04067at 397.860 kb on + strand, within BACOVA_04067at 397.876 kb on - strand, within BACOVA_04067at 397.947 kb on + strandat 397.948 kb on - strandat 397.969 kb on - strandat 398.030 kb on + strandat 398.031 kb on - strandat 398.044 kb on + strandat 398.051 kb on - strandat 398.072 kb on - strand, within BACOVA_04068at 398.130 kb on + strand, within BACOVA_04068at 398.154 kb on + strand, within BACOVA_04068at 398.155 kb on - strand, within BACOVA_04068at 398.181 kb on - strand, within BACOVA_04068at 398.248 kb on - strand, within BACOVA_04068at 398.319 kb on - strand, within BACOVA_04068at 398.356 kb on + strand, within BACOVA_04068at 398.357 kb on - strand, within BACOVA_04068at 398.363 kb on + strand, within BACOVA_04068at 398.431 kb on - strandat 398.436 kb on + strandat 398.476 kb on + strandat 398.476 kb on + strandat 398.477 kb on - strandat 398.477 kb on - strandat 398.478 kb on + strandat 398.507 kb on + strandat 398.513 kb on + strandat 398.526 kb on - strandat 398.528 kb on + strandat 398.528 kb on + strandat 398.530 kb on + strandat 398.530 kb on + strandat 398.530 kb on + strandat 398.530 kb on + strandat 398.530 kb on + strandat 398.531 kb on - strandat 398.531 kb on - strandat 398.531 kb on - strandat 398.532 kb on + strandat 398.533 kb on - strandat 398.533 kb on - strandat 398.552 kb on + strandat 398.577 kb on - strand, within BACOVA_04069at 398.577 kb on - strand, within BACOVA_04069at 398.589 kb on + strand, within BACOVA_04069at 398.590 kb on - strand, within BACOVA_04069at 398.590 kb on - strand, within BACOVA_04069at 398.615 kb on - strand, within BACOVA_04069at 398.641 kb on - strand, within BACOVA_04069at 398.654 kb on + strand, within BACOVA_04069at 398.670 kb on + strand, within BACOVA_04069at 398.671 kb on - strand, within BACOVA_04069at 398.671 kb on - strand, within BACOVA_04069at 398.674 kb on + strand, within BACOVA_04069at 398.696 kb on + strand, within BACOVA_04069at 398.696 kb on + strand, within BACOVA_04069at 398.696 kb on + strand, within BACOVA_04069at 398.713 kb on + strand, within BACOVA_04069at 398.761 kb on - strand, within BACOVA_04069at 398.801 kb on + strand, within BACOVA_04069at 398.803 kb on + strand, within BACOVA_04069at 398.803 kb on + strand, within BACOVA_04069at 398.804 kb on - strand, within BACOVA_04069at 398.858 kb on + strand, within BACOVA_04069at 398.862 kb on - strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.908 kb on + strand, within BACOVA_04069at 398.912 kb on + strand, within BACOVA_04069at 398.912 kb on + strand, within BACOVA_04069at 398.913 kb on - strand, within BACOVA_04069

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C)
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396,527 + +0.1
396,528 - -0.9
396,684 + +0.4
396,710 - -1.4
396,824 + -1.2
396,830 - -0.4
396,832 + +1.3
396,861 + BACOVA_04065 0.12 +0.1
396,861 + BACOVA_04065 0.12 +0.1
396,874 - BACOVA_04065 0.17 -0.7
397,035 + BACOVA_04065 0.89 -0.6
397,036 - BACOVA_04065 0.89 +0.6
397,077 + -0.9
397,077 + -2.6
397,078 - -0.4
397,079 + -0.3
397,124 + +0.7
397,125 - -1.7
397,211 + BACOVA_04066 0.38 +0.0
397,273 - BACOVA_04066 0.83 +1.0
397,310 - +0.8
397,365 + -0.4
397,370 + -1.2
397,381 - +1.4
397,447 + -0.4
397,478 + +1.1
397,479 - +0.0
397,479 - -0.4
397,479 - -1.8
397,490 + +0.8
397,490 + +0.3
397,490 + -0.2
397,491 - -0.0
397,492 + -0.1
397,493 - +0.1
397,495 - -0.7
397,495 - +0.9
397,495 - +0.1
397,510 - +1.2
397,524 + +0.8
397,524 + -1.9
397,525 - -1.2
397,565 + BACOVA_04067 0.13 -2.3
397,566 - BACOVA_04067 0.13 +0.1
397,588 - BACOVA_04067 0.19 -2.4
397,643 + BACOVA_04067 0.32 -0.7
397,669 - BACOVA_04067 0.39 -1.6
397,678 - BACOVA_04067 0.41 -0.3
397,709 - BACOVA_04067 0.49 -1.4
397,731 - BACOVA_04067 0.54 -0.1
397,787 - BACOVA_04067 0.68 +2.0
397,857 - BACOVA_04067 0.85 +0.1
397,860 + BACOVA_04067 0.86 -0.9
397,876 - BACOVA_04067 0.89 -0.3
397,947 + +1.1
397,948 - +1.1
397,969 - +0.8
398,030 + -0.9
398,031 - +1.1
398,044 + +0.3
398,051 - +0.6
398,072 - BACOVA_04068 0.10 +1.1
398,130 + BACOVA_04068 0.24 -0.3
398,154 + BACOVA_04068 0.30 +1.1
398,155 - BACOVA_04068 0.30 -0.9
398,181 - BACOVA_04068 0.37 -0.4
398,248 - BACOVA_04068 0.53 +1.8
398,319 - BACOVA_04068 0.71 -1.2
398,356 + BACOVA_04068 0.80 -1.0
398,357 - BACOVA_04068 0.80 +0.5
398,363 + BACOVA_04068 0.81 -0.9
398,431 - -1.7
398,436 + -2.9
398,476 + +0.9
398,476 + -1.9
398,477 - -0.2
398,477 - -1.4
398,478 + +0.3
398,507 + +1.1
398,513 + +1.1
398,526 - +1.6
398,528 + -0.3
398,528 + -0.7
398,530 + +0.1
398,530 + +1.3
398,530 + +0.1
398,530 + -1.9
398,530 + -0.6
398,531 - +1.1
398,531 - -0.8
398,531 - +0.6
398,532 + -0.0
398,533 - -2.3
398,533 - -0.7
398,552 + +1.1
398,577 - BACOVA_04069 0.10 -0.3
398,577 - BACOVA_04069 0.10 +0.1
398,589 + BACOVA_04069 0.11 -1.6
398,590 - BACOVA_04069 0.11 -0.4
398,590 - BACOVA_04069 0.11 -0.1
398,615 - BACOVA_04069 0.13 +0.1
398,641 - BACOVA_04069 0.15 -0.1
398,654 + BACOVA_04069 0.16 +0.3
398,670 + BACOVA_04069 0.17 -0.0
398,671 - BACOVA_04069 0.18 +0.7
398,671 - BACOVA_04069 0.18 -0.9
398,674 + BACOVA_04069 0.18 +0.6
398,696 + BACOVA_04069 0.19 -0.6
398,696 + BACOVA_04069 0.19 +1.1
398,696 + BACOVA_04069 0.19 +1.0
398,713 + BACOVA_04069 0.21 +0.3
398,761 - BACOVA_04069 0.24 -0.3
398,801 + BACOVA_04069 0.28 -0.3
398,803 + BACOVA_04069 0.28 -0.3
398,803 + BACOVA_04069 0.28 +1.1
398,804 - BACOVA_04069 0.28 +0.7
398,858 + BACOVA_04069 0.32 +0.9
398,862 - BACOVA_04069 0.32 -1.4
398,908 + BACOVA_04069 0.36 +2.1
398,908 + BACOVA_04069 0.36 -0.3
398,908 + BACOVA_04069 0.36 -1.1
398,908 + BACOVA_04069 0.36 +0.7
398,912 + BACOVA_04069 0.36 +0.3
398,912 + BACOVA_04069 0.36 +1.1
398,913 - BACOVA_04069 0.36 -0.4

Or see this region's nucleotide sequence