Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03901

Experiment: Pectin from apple; filtered 1 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03899 and BACOVA_03900 are separated by 111 nucleotidesBACOVA_03900 and BACOVA_03901 are separated by 48 nucleotidesBACOVA_03901 and BACOVA_03902 are separated by 28 nucleotidesBACOVA_03902 and BACOVA_03903 are separated by 167 nucleotidesBACOVA_03903 and BACOVA_03904 are separated by 21 nucleotides BACOVA_03899: BACOVA_03899 - hypothetical protein, at 238,935 to 239,687 _03899 BACOVA_03900: BACOVA_03900 - hypothetical protein, at 239,799 to 240,374 _03900 BACOVA_03901: BACOVA_03901 - hypothetical protein, at 240,423 to 241,070 _03901 BACOVA_03902: BACOVA_03902 - hypothetical protein, at 241,099 to 241,563 _03902 BACOVA_03903: BACOVA_03903 - hypothetical protein, at 241,731 to 241,886 _03903 BACOVA_03904: BACOVA_03904 - phosphoadenosine phosphosulfate reductase family protein, at 241,908 to 242,630 _03904 Position (kb) 240 241 242Strain fitness (log2 ratio) -2 -1 0 1 2at 239.445 kb on + strand, within BACOVA_03899at 239.455 kb on - strand, within BACOVA_03899at 239.537 kb on + strand, within BACOVA_03899at 239.562 kb on - strand, within BACOVA_03899at 239.598 kb on - strand, within BACOVA_03899at 239.658 kb on + strandat 239.660 kb on + strandat 239.663 kb on + strandat 239.663 kb on + strandat 239.665 kb on + strandat 239.666 kb on - strandat 239.666 kb on - strandat 239.666 kb on - strandat 239.708 kb on + strandat 239.733 kb on + strandat 239.773 kb on - strandat 239.804 kb on + strandat 239.806 kb on + strandat 239.957 kb on + strand, within BACOVA_03900at 239.987 kb on + strand, within BACOVA_03900at 239.988 kb on - strand, within BACOVA_03900at 239.995 kb on + strand, within BACOVA_03900at 239.996 kb on - strand, within BACOVA_03900at 240.038 kb on + strand, within BACOVA_03900at 240.039 kb on - strand, within BACOVA_03900at 240.058 kb on + strand, within BACOVA_03900at 240.059 kb on - strand, within BACOVA_03900at 240.059 kb on - strand, within BACOVA_03900at 240.078 kb on - strand, within BACOVA_03900at 240.135 kb on + strand, within BACOVA_03900at 240.135 kb on + strand, within BACOVA_03900at 240.135 kb on + strand, within BACOVA_03900at 240.141 kb on - strand, within BACOVA_03900at 240.150 kb on - strand, within BACOVA_03900at 240.208 kb on - strand, within BACOVA_03900at 240.224 kb on + strand, within BACOVA_03900at 240.224 kb on + strand, within BACOVA_03900at 240.280 kb on - strand, within BACOVA_03900at 240.311 kb on - strand, within BACOVA_03900at 240.346 kb on + strandat 240.350 kb on + strandat 240.350 kb on + strandat 240.351 kb on - strandat 240.351 kb on - strandat 240.373 kb on - strandat 240.455 kb on - strandat 240.537 kb on - strand, within BACOVA_03901at 240.539 kb on - strand, within BACOVA_03901at 240.542 kb on - strand, within BACOVA_03901at 240.546 kb on - strand, within BACOVA_03901at 240.574 kb on - strand, within BACOVA_03901at 240.574 kb on - strand, within BACOVA_03901at 240.606 kb on - strand, within BACOVA_03901at 240.685 kb on - strand, within BACOVA_03901at 240.702 kb on - strand, within BACOVA_03901at 240.825 kb on - strand, within BACOVA_03901at 240.876 kb on - strand, within BACOVA_03901at 240.970 kb on - strand, within BACOVA_03901at 240.988 kb on - strand, within BACOVA_03901at 240.988 kb on - strand, within BACOVA_03901at 240.988 kb on - strand, within BACOVA_03901at 241.079 kb on - strandat 241.164 kb on - strand, within BACOVA_03902at 241.164 kb on - strand, within BACOVA_03902at 241.164 kb on - strand, within BACOVA_03902at 241.212 kb on - strand, within BACOVA_03902at 241.291 kb on - strand, within BACOVA_03902at 241.293 kb on - strand, within BACOVA_03902at 241.293 kb on - strand, within BACOVA_03902at 241.318 kb on - strand, within BACOVA_03902at 241.393 kb on - strand, within BACOVA_03902at 241.447 kb on - strand, within BACOVA_03902at 241.468 kb on - strand, within BACOVA_03902at 241.580 kb on - strandat 241.580 kb on - strandat 241.596 kb on - strandat 241.608 kb on - strandat 241.743 kb on - strandat 241.759 kb on - strand, within BACOVA_03903at 241.788 kb on - strand, within BACOVA_03903at 241.845 kb on - strand, within BACOVA_03903at 241.845 kb on - strand, within BACOVA_03903at 241.845 kb on - strand, within BACOVA_03903at 241.845 kb on - strand, within BACOVA_03903at 241.857 kb on - strand, within BACOVA_03903at 241.915 kb on - strandat 241.967 kb on - strandat 241.967 kb on - strandat 242.005 kb on - strand, within BACOVA_03904at 242.035 kb on - strand, within BACOVA_03904at 242.035 kb on - strand, within BACOVA_03904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C)
remove
239,445 + BACOVA_03899 0.68 +0.4
239,455 - BACOVA_03899 0.69 +0.8
239,537 + BACOVA_03899 0.80 -0.4
239,562 - BACOVA_03899 0.83 +0.5
239,598 - BACOVA_03899 0.88 +0.1
239,658 + +0.6
239,660 + +0.7
239,663 + -0.4
239,663 + +0.1
239,665 + -0.8
239,666 - +0.8
239,666 - -0.4
239,666 - -1.1
239,708 + -1.0
239,733 + +1.2
239,773 - +0.6
239,804 + -0.3
239,806 + +0.8
239,957 + BACOVA_03900 0.27 +1.0
239,987 + BACOVA_03900 0.33 +0.7
239,988 - BACOVA_03900 0.33 -0.4
239,995 + BACOVA_03900 0.34 -0.4
239,996 - BACOVA_03900 0.34 -0.6
240,038 + BACOVA_03900 0.41 -0.1
240,039 - BACOVA_03900 0.42 +0.1
240,058 + BACOVA_03900 0.45 -0.1
240,059 - BACOVA_03900 0.45 +1.0
240,059 - BACOVA_03900 0.45 +0.1
240,078 - BACOVA_03900 0.48 +0.7
240,135 + BACOVA_03900 0.58 -0.4
240,135 + BACOVA_03900 0.58 +0.2
240,135 + BACOVA_03900 0.58 +0.2
240,141 - BACOVA_03900 0.59 -0.6
240,150 - BACOVA_03900 0.61 +0.3
240,208 - BACOVA_03900 0.71 -0.2
240,224 + BACOVA_03900 0.74 +0.2
240,224 + BACOVA_03900 0.74 +0.3
240,280 - BACOVA_03900 0.84 -0.2
240,311 - BACOVA_03900 0.89 +0.2
240,346 + -0.0
240,350 + -1.8
240,350 + +1.2
240,351 - +0.2
240,351 - -1.9
240,373 - +1.3
240,455 - +1.5
240,537 - BACOVA_03901 0.18 +0.4
240,539 - BACOVA_03901 0.18 -0.4
240,542 - BACOVA_03901 0.18 +0.2
240,546 - BACOVA_03901 0.19 +0.0
240,574 - BACOVA_03901 0.23 +2.0
240,574 - BACOVA_03901 0.23 -1.1
240,606 - BACOVA_03901 0.28 -0.4
240,685 - BACOVA_03901 0.40 -0.1
240,702 - BACOVA_03901 0.43 +1.2
240,825 - BACOVA_03901 0.62 -1.7
240,876 - BACOVA_03901 0.70 +0.4
240,970 - BACOVA_03901 0.84 -1.8
240,988 - BACOVA_03901 0.87 +0.6
240,988 - BACOVA_03901 0.87 -0.1
240,988 - BACOVA_03901 0.87 -0.1
241,079 - +0.6
241,164 - BACOVA_03902 0.14 -1.3
241,164 - BACOVA_03902 0.14 +0.2
241,164 - BACOVA_03902 0.14 -0.2
241,212 - BACOVA_03902 0.24 +0.4
241,291 - BACOVA_03902 0.41 -2.3
241,293 - BACOVA_03902 0.42 -0.8
241,293 - BACOVA_03902 0.42 -0.3
241,318 - BACOVA_03902 0.47 +1.8
241,393 - BACOVA_03902 0.63 +0.1
241,447 - BACOVA_03902 0.75 +1.0
241,468 - BACOVA_03902 0.79 +1.4
241,580 - +0.2
241,580 - +2.5
241,596 - -0.8
241,608 - -1.6
241,743 - -1.4
241,759 - BACOVA_03903 0.18 -1.6
241,788 - BACOVA_03903 0.37 -1.4
241,845 - BACOVA_03903 0.73 +0.5
241,845 - BACOVA_03903 0.73 -0.4
241,845 - BACOVA_03903 0.73 -0.3
241,845 - BACOVA_03903 0.73 -0.0
241,857 - BACOVA_03903 0.81 +0.2
241,915 - +0.4
241,967 - +0.9
241,967 - -1.1
242,005 - BACOVA_03904 0.13 +0.4
242,035 - BACOVA_03904 0.18 -0.2
242,035 - BACOVA_03904 0.18 +0.6

Or see this region's nucleotide sequence