Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03431 and BACOVA_03432 are separated by 33 nucleotides BACOVA_03432 and BACOVA_03433 overlap by 1 nucleotides
BACOVA_03431: BACOVA_03431 - hypothetical protein, at 153,742 to 155,994
_03431
BACOVA_03432: BACOVA_03432 - hypothetical protein, at 156,028 to 157,671
_03432
BACOVA_03433: BACOVA_03433 - glycosyl hydrolase family 98 C-terminal domain protein, at 157,671 to 160,514
_03433
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 155.046 kb on + strand, within BACOVA_03431 at 155.067 kb on - strand, within BACOVA_03431 at 155.067 kb on - strand, within BACOVA_03431 at 155.095 kb on + strand, within BACOVA_03431 at 155.096 kb on - strand, within BACOVA_03431 at 155.096 kb on - strand, within BACOVA_03431 at 155.125 kb on - strand, within BACOVA_03431 at 155.168 kb on + strand, within BACOVA_03431 at 155.169 kb on - strand, within BACOVA_03431 at 155.209 kb on + strand, within BACOVA_03431 at 155.209 kb on + strand, within BACOVA_03431 at 155.218 kb on - strand, within BACOVA_03431 at 155.320 kb on - strand, within BACOVA_03431 at 155.326 kb on + strand, within BACOVA_03431 at 155.326 kb on + strand, within BACOVA_03431 at 155.377 kb on - strand, within BACOVA_03431 at 155.407 kb on - strand, within BACOVA_03431 at 155.412 kb on + strand, within BACOVA_03431 at 155.425 kb on + strand, within BACOVA_03431 at 155.438 kb on + strand, within BACOVA_03431 at 155.443 kb on + strand, within BACOVA_03431 at 155.444 kb on - strand, within BACOVA_03431 at 155.496 kb on - strand, within BACOVA_03431 at 155.568 kb on - strand, within BACOVA_03431 at 155.622 kb on + strand, within BACOVA_03431 at 155.705 kb on + strand, within BACOVA_03431 at 155.706 kb on - strand, within BACOVA_03431 at 155.709 kb on + strand, within BACOVA_03431 at 155.710 kb on - strand, within BACOVA_03431 at 155.743 kb on - strand, within BACOVA_03431 at 155.805 kb on + strand at 155.825 kb on - strand at 155.825 kb on - strand at 155.825 kb on - strand at 155.826 kb on + strand at 155.827 kb on - strand at 155.890 kb on - strand at 155.901 kb on + strand at 155.902 kb on - strand at 155.913 kb on + strand at 155.914 kb on - strand at 155.922 kb on + strand at 155.923 kb on - strand at 155.947 kb on - strand at 155.956 kb on - strand at 155.973 kb on + strand at 155.973 kb on + strand at 155.974 kb on - strand at 155.974 kb on - strand at 156.020 kb on - strand at 156.024 kb on - strand at 156.024 kb on - strand at 156.025 kb on + strand at 156.025 kb on + strand at 156.026 kb on - strand at 156.037 kb on - strand at 156.040 kb on - strand at 156.048 kb on - strand at 156.172 kb on - strand at 156.247 kb on - strand, within BACOVA_03432 at 156.252 kb on - strand, within BACOVA_03432 at 156.252 kb on - strand, within BACOVA_03432 at 156.286 kb on - strand, within BACOVA_03432 at 156.301 kb on + strand, within BACOVA_03432 at 156.369 kb on - strand, within BACOVA_03432 at 156.382 kb on - strand, within BACOVA_03432 at 156.436 kb on - strand, within BACOVA_03432 at 156.441 kb on - strand, within BACOVA_03432 at 156.494 kb on - strand, within BACOVA_03432 at 156.494 kb on - strand, within BACOVA_03432 at 156.494 kb on - strand, within BACOVA_03432 at 156.494 kb on - strand, within BACOVA_03432 at 156.547 kb on - strand, within BACOVA_03432 at 156.553 kb on + strand, within BACOVA_03432 at 156.579 kb on + strand, within BACOVA_03432 at 156.599 kb on - strand, within BACOVA_03432 at 156.629 kb on + strand, within BACOVA_03432 at 156.666 kb on + strand, within BACOVA_03432 at 156.690 kb on + strand, within BACOVA_03432 at 156.709 kb on - strand, within BACOVA_03432 at 156.709 kb on - strand, within BACOVA_03432 at 156.766 kb on + strand, within BACOVA_03432 at 156.780 kb on + strand, within BACOVA_03432 at 156.788 kb on - strand, within BACOVA_03432 at 156.792 kb on + strand, within BACOVA_03432 at 156.793 kb on - strand, within BACOVA_03432 at 156.823 kb on + strand, within BACOVA_03432 at 156.862 kb on - strand, within BACOVA_03432 at 156.866 kb on - strand, within BACOVA_03432 at 156.896 kb on + strand, within BACOVA_03432 at 156.973 kb on + strand, within BACOVA_03432 at 156.974 kb on - strand, within BACOVA_03432 at 156.975 kb on + strand, within BACOVA_03432 at 156.984 kb on + strand, within BACOVA_03432 at 156.984 kb on + strand, within BACOVA_03432 at 156.985 kb on - strand, within BACOVA_03432 at 157.021 kb on - strand, within BACOVA_03432 at 157.026 kb on - strand, within BACOVA_03432 at 157.090 kb on + strand, within BACOVA_03432 at 157.105 kb on + strand, within BACOVA_03432 at 157.106 kb on - strand, within BACOVA_03432 at 157.127 kb on + strand, within BACOVA_03432 at 157.207 kb on + strand, within BACOVA_03432 at 157.208 kb on - strand, within BACOVA_03432 at 157.245 kb on + strand, within BACOVA_03432 at 157.246 kb on - strand, within BACOVA_03432 at 157.246 kb on - strand, within BACOVA_03432 at 157.267 kb on + strand, within BACOVA_03432 at 157.268 kb on - strand, within BACOVA_03432 at 157.270 kb on - strand, within BACOVA_03432 at 157.270 kb on - strand, within BACOVA_03432 at 157.270 kb on - strand, within BACOVA_03432 at 157.271 kb on + strand, within BACOVA_03432 at 157.272 kb on - strand, within BACOVA_03432 at 157.272 kb on - strand, within BACOVA_03432 at 157.272 kb on - strand, within BACOVA_03432 at 157.272 kb on - strand, within BACOVA_03432 at 157.273 kb on + strand, within BACOVA_03432 at 157.274 kb on - strand, within BACOVA_03432 at 157.274 kb on - strand, within BACOVA_03432 at 157.279 kb on + strand, within BACOVA_03432 at 157.294 kb on + strand, within BACOVA_03432 at 157.294 kb on + strand, within BACOVA_03432 at 157.361 kb on + strand, within BACOVA_03432 at 157.361 kb on - strand, within BACOVA_03432 at 157.362 kb on + strand, within BACOVA_03432 at 157.362 kb on + strand, within BACOVA_03432 at 157.363 kb on - strand, within BACOVA_03432 at 157.365 kb on + strand, within BACOVA_03432 at 157.417 kb on - strand, within BACOVA_03432 at 157.441 kb on - strand, within BACOVA_03432 at 157.481 kb on + strand, within BACOVA_03432 at 157.482 kb on - strand, within BACOVA_03432 at 157.484 kb on + strand, within BACOVA_03432 at 157.526 kb on + strand at 157.576 kb on - strand at 157.576 kb on - strand at 157.618 kb on - strand at 157.618 kb on - strand at 157.619 kb on + strand at 157.620 kb on - strand at 157.638 kb on + strand at 157.647 kb on - strand at 157.670 kb on - strand at 157.675 kb on + strand at 157.676 kb on - strand at 157.676 kb on - strand at 157.678 kb on + strand at 157.685 kb on + strand at 157.686 kb on - strand at 157.721 kb on + strand at 157.727 kb on - strand at 157.732 kb on - strand at 157.754 kb on - strand at 157.754 kb on - strand at 157.754 kb on - strand at 157.766 kb on + strand at 157.832 kb on + strand at 157.847 kb on + strand at 157.851 kb on - strand at 157.856 kb on + strand at 157.870 kb on + strand at 157.871 kb on - strand at 157.871 kb on - strand at 157.875 kb on - strand at 157.881 kb on - strand at 157.909 kb on + strand at 157.910 kb on - strand at 157.917 kb on + strand at 157.979 kb on + strand, within BACOVA_03433 at 157.979 kb on + strand, within BACOVA_03433 at 157.979 kb on + strand, within BACOVA_03433 at 157.980 kb on - strand, within BACOVA_03433 at 157.983 kb on + strand, within BACOVA_03433 at 157.983 kb on + strand, within BACOVA_03433 at 157.983 kb on + strand, within BACOVA_03433 at 157.983 kb on + strand, within BACOVA_03433 at 157.984 kb on - strand, within BACOVA_03433 at 157.993 kb on + strand, within BACOVA_03433 at 157.994 kb on - strand, within BACOVA_03433 at 158.023 kb on + strand, within BACOVA_03433 at 158.024 kb on - strand, within BACOVA_03433 at 158.024 kb on - strand, within BACOVA_03433 at 158.024 kb on - strand, within BACOVA_03433 at 158.129 kb on - strand, within BACOVA_03433 at 158.129 kb on - strand, within BACOVA_03433 at 158.156 kb on - strand, within BACOVA_03433 at 158.163 kb on - strand, within BACOVA_03433 at 158.166 kb on - strand, within BACOVA_03433 at 158.193 kb on + strand, within BACOVA_03433 at 158.265 kb on - strand, within BACOVA_03433 at 158.268 kb on - strand, within BACOVA_03433 at 158.385 kb on - strand, within BACOVA_03433 at 158.475 kb on - strand, within BACOVA_03433 at 158.513 kb on - strand, within BACOVA_03433 at 158.538 kb on + strand, within BACOVA_03433 at 158.539 kb on - strand, within BACOVA_03433 at 158.539 kb on - strand, within BACOVA_03433 at 158.600 kb on + strand, within BACOVA_03433 at 158.640 kb on - strand, within BACOVA_03433 at 158.648 kb on + strand, within BACOVA_03433 at 158.649 kb on - strand, within BACOVA_03433 at 158.662 kb on + strand, within BACOVA_03433 at 158.662 kb on + strand, within BACOVA_03433 at 158.663 kb on - strand, within BACOVA_03433 at 158.665 kb on - strand, within BACOVA_03433 at 158.665 kb on - strand, within BACOVA_03433
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 155,046 + BACOVA_03431 0.58 +0.0 155,067 - BACOVA_03431 0.59 +0.1 155,067 - BACOVA_03431 0.59 -0.2 155,095 + BACOVA_03431 0.60 +0.3 155,096 - BACOVA_03431 0.60 +1.3 155,096 - BACOVA_03431 0.60 -0.5 155,125 - BACOVA_03431 0.61 +0.4 155,168 + BACOVA_03431 0.63 -0.3 155,169 - BACOVA_03431 0.63 -0.8 155,209 + BACOVA_03431 0.65 -1.1 155,209 + BACOVA_03431 0.65 -1.3 155,218 - BACOVA_03431 0.66 -1.4 155,320 - BACOVA_03431 0.70 -0.4 155,326 + BACOVA_03431 0.70 +1.3 155,326 + BACOVA_03431 0.70 +0.1 155,377 - BACOVA_03431 0.73 +0.2 155,407 - BACOVA_03431 0.74 -0.7 155,412 + BACOVA_03431 0.74 +0.3 155,425 + BACOVA_03431 0.75 -0.1 155,438 + BACOVA_03431 0.75 -1.9 155,443 + BACOVA_03431 0.75 +2.2 155,444 - BACOVA_03431 0.76 -3.3 155,496 - BACOVA_03431 0.78 +0.9 155,568 - BACOVA_03431 0.81 +0.3 155,622 + BACOVA_03431 0.83 +0.9 155,705 + BACOVA_03431 0.87 -0.6 155,706 - BACOVA_03431 0.87 -0.8 155,709 + BACOVA_03431 0.87 -0.4 155,710 - BACOVA_03431 0.87 -1.1 155,743 - BACOVA_03431 0.89 -0.5 155,805 + +0.8 155,825 - -0.8 155,825 - +0.6 155,825 - +1.1 155,826 + +0.9 155,827 - -1.9 155,890 - -0.8 155,901 + -0.7 155,902 - +0.3 155,913 + +0.9 155,914 - +0.3 155,922 + -1.0 155,923 - -1.0 155,947 - +1.8 155,956 - -0.4 155,973 + -2.0 155,973 + +1.9 155,974 - -0.3 155,974 - +0.1 156,020 - +1.9 156,024 - +0.3 156,024 - -0.1 156,025 + -0.1 156,025 + +1.0 156,026 - -0.6 156,037 - +0.3 156,040 - +0.3 156,048 - -1.1 156,172 - -0.0 156,247 - BACOVA_03432 0.13 +0.3 156,252 - BACOVA_03432 0.14 +0.1 156,252 - BACOVA_03432 0.14 -0.4 156,286 - BACOVA_03432 0.16 +0.1 156,301 + BACOVA_03432 0.17 -0.3 156,369 - BACOVA_03432 0.21 -0.9 156,382 - BACOVA_03432 0.22 +0.3 156,436 - BACOVA_03432 0.25 +0.8 156,441 - BACOVA_03432 0.25 +0.3 156,494 - BACOVA_03432 0.28 -2.4 156,494 - BACOVA_03432 0.28 +1.7 156,494 - BACOVA_03432 0.28 -0.8 156,494 - BACOVA_03432 0.28 +0.9 156,547 - BACOVA_03432 0.32 +0.7 156,553 + BACOVA_03432 0.32 -0.4 156,579 + BACOVA_03432 0.34 -0.2 156,599 - BACOVA_03432 0.35 +1.0 156,629 + BACOVA_03432 0.37 -0.6 156,666 + BACOVA_03432 0.39 +0.5 156,690 + BACOVA_03432 0.40 +0.9 156,709 - BACOVA_03432 0.41 -0.3 156,709 - BACOVA_03432 0.41 +1.5 156,766 + BACOVA_03432 0.45 +1.5 156,780 + BACOVA_03432 0.46 -0.3 156,788 - BACOVA_03432 0.46 +0.1 156,792 + BACOVA_03432 0.46 -0.4 156,793 - BACOVA_03432 0.47 +0.7 156,823 + BACOVA_03432 0.48 -0.0 156,862 - BACOVA_03432 0.51 +0.1 156,866 - BACOVA_03432 0.51 -1.1 156,896 + BACOVA_03432 0.53 -1.1 156,973 + BACOVA_03432 0.57 -0.7 156,974 - BACOVA_03432 0.58 -0.4 156,975 + BACOVA_03432 0.58 -0.5 156,984 + BACOVA_03432 0.58 +1.9 156,984 + BACOVA_03432 0.58 -1.3 156,985 - BACOVA_03432 0.58 +0.7 157,021 - BACOVA_03432 0.60 -0.2 157,026 - BACOVA_03432 0.61 -0.2 157,090 + BACOVA_03432 0.65 +0.9 157,105 + BACOVA_03432 0.66 -1.4 157,106 - BACOVA_03432 0.66 -2.4 157,127 + BACOVA_03432 0.67 -0.3 157,207 + BACOVA_03432 0.72 -0.7 157,208 - BACOVA_03432 0.72 -1.4 157,245 + BACOVA_03432 0.74 -1.7 157,246 - BACOVA_03432 0.74 -0.2 157,246 - BACOVA_03432 0.74 -0.5 157,267 + BACOVA_03432 0.75 -1.0 157,268 - BACOVA_03432 0.75 -0.0 157,270 - BACOVA_03432 0.76 -1.3 157,270 - BACOVA_03432 0.76 +0.3 157,270 - BACOVA_03432 0.76 +1.0 157,271 + BACOVA_03432 0.76 +0.2 157,272 - BACOVA_03432 0.76 -0.7 157,272 - BACOVA_03432 0.76 -0.7 157,272 - BACOVA_03432 0.76 -0.4 157,272 - BACOVA_03432 0.76 -2.5 157,273 + BACOVA_03432 0.76 -0.9 157,274 - BACOVA_03432 0.76 +0.7 157,274 - BACOVA_03432 0.76 +0.3 157,279 + BACOVA_03432 0.76 -0.3 157,294 + BACOVA_03432 0.77 -0.6 157,294 + BACOVA_03432 0.77 -1.5 157,361 + BACOVA_03432 0.81 -1.9 157,361 - BACOVA_03432 0.81 -0.1 157,362 + BACOVA_03432 0.81 +0.9 157,362 + BACOVA_03432 0.81 +0.7 157,363 - BACOVA_03432 0.81 -0.1 157,365 + BACOVA_03432 0.81 +0.5 157,417 - BACOVA_03432 0.84 -0.9 157,441 - BACOVA_03432 0.86 +1.3 157,481 + BACOVA_03432 0.88 -1.0 157,482 - BACOVA_03432 0.88 -0.1 157,484 + BACOVA_03432 0.89 +0.7 157,526 + -0.9 157,576 - -3.1 157,576 - +0.4 157,618 - -0.4 157,618 - -0.4 157,619 + -0.6 157,620 - -1.0 157,638 + -1.1 157,647 - -0.5 157,670 - -0.3 157,675 + -1.7 157,676 - +1.3 157,676 - +0.1 157,678 + -0.5 157,685 + -0.2 157,686 - -0.1 157,721 + -0.5 157,727 - -0.6 157,732 - +0.3 157,754 - -0.6 157,754 - -0.6 157,754 - +0.3 157,766 + -0.6 157,832 + +0.9 157,847 + +0.5 157,851 - +0.5 157,856 + -1.3 157,870 + -0.0 157,871 - -0.7 157,871 - -1.1 157,875 - +0.5 157,881 - +0.1 157,909 + -0.6 157,910 - -0.9 157,917 + -1.0 157,979 + BACOVA_03433 0.11 +1.0 157,979 + BACOVA_03433 0.11 -1.4 157,979 + BACOVA_03433 0.11 +0.7 157,980 - BACOVA_03433 0.11 +0.3 157,983 + BACOVA_03433 0.11 +0.8 157,983 + BACOVA_03433 0.11 +0.7 157,983 + BACOVA_03433 0.11 +0.2 157,983 + BACOVA_03433 0.11 +0.3 157,984 - BACOVA_03433 0.11 -0.5 157,993 + BACOVA_03433 0.11 +0.2 157,994 - BACOVA_03433 0.11 -1.5 158,023 + BACOVA_03433 0.12 +1.3 158,024 - BACOVA_03433 0.12 +0.8 158,024 - BACOVA_03433 0.12 -0.5 158,024 - BACOVA_03433 0.12 -0.5 158,129 - BACOVA_03433 0.16 -0.3 158,129 - BACOVA_03433 0.16 -0.1 158,156 - BACOVA_03433 0.17 -0.0 158,163 - BACOVA_03433 0.17 -0.3 158,166 - BACOVA_03433 0.17 -0.9 158,193 + BACOVA_03433 0.18 +0.3 158,265 - BACOVA_03433 0.21 +0.0 158,268 - BACOVA_03433 0.21 +0.5 158,385 - BACOVA_03433 0.25 -1.0 158,475 - BACOVA_03433 0.28 -0.1 158,513 - BACOVA_03433 0.30 -0.7 158,538 + BACOVA_03433 0.30 -0.3 158,539 - BACOVA_03433 0.31 +0.3 158,539 - BACOVA_03433 0.31 +0.2 158,600 + BACOVA_03433 0.33 -0.5 158,640 - BACOVA_03433 0.34 +0.2 158,648 + BACOVA_03433 0.34 -0.8 158,649 - BACOVA_03433 0.34 +0.2 158,662 + BACOVA_03433 0.35 -1.0 158,662 + BACOVA_03433 0.35 +0.5 158,663 - BACOVA_03433 0.35 +0.6 158,665 - BACOVA_03433 0.35 -1.5 158,665 - BACOVA_03433 0.35 +0.6
Or see this region's nucleotide sequence