Experiment: Pectin from apple; filtered 1 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03341 and BACOVA_03342 are separated by 73 nucleotides BACOVA_03342 and BACOVA_03343 overlap by 8 nucleotides
BACOVA_03341: BACOVA_03341 - glycosyl hydrolase family 76, at 34,424 to 35,746
_03341
BACOVA_03342: BACOVA_03342 - hypothetical protein, at 35,820 to 36,914
_03342
BACOVA_03343: BACOVA_03343 - hypothetical protein, at 36,907 to 38,403
_03343
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.828 kb on + strand, within BACOVA_03341 at 34.832 kb on - strand, within BACOVA_03341 at 34.852 kb on + strand, within BACOVA_03341 at 34.857 kb on - strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.923 kb on - strand, within BACOVA_03341 at 34.956 kb on + strand, within BACOVA_03341 at 34.962 kb on - strand, within BACOVA_03341 at 34.995 kb on - strand, within BACOVA_03341 at 35.026 kb on + strand, within BACOVA_03341 at 35.027 kb on - strand, within BACOVA_03341 at 35.048 kb on - strand, within BACOVA_03341 at 35.083 kb on + strand, within BACOVA_03341 at 35.084 kb on - strand, within BACOVA_03341 at 35.133 kb on - strand, within BACOVA_03341 at 35.146 kb on + strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.192 kb on + strand, within BACOVA_03341 at 35.234 kb on + strand, within BACOVA_03341 at 35.353 kb on - strand, within BACOVA_03341 at 35.385 kb on + strand, within BACOVA_03341 at 35.393 kb on + strand, within BACOVA_03341 at 35.395 kb on + strand, within BACOVA_03341 at 35.474 kb on + strand, within BACOVA_03341 at 35.513 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.580 kb on + strand, within BACOVA_03341 at 35.597 kb on - strand, within BACOVA_03341 at 35.603 kb on - strand, within BACOVA_03341 at 35.617 kb on + strand at 35.635 kb on + strand at 35.654 kb on + strand at 35.660 kb on - strand at 35.670 kb on + strand at 35.671 kb on - strand at 35.680 kb on + strand at 35.680 kb on + strand at 35.681 kb on - strand at 35.681 kb on - strand at 35.693 kb on + strand at 35.693 kb on + strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.741 kb on - strand at 35.770 kb on + strand at 35.777 kb on + strand at 35.785 kb on - strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.815 kb on + strand at 35.871 kb on + strand at 35.874 kb on - strand at 35.897 kb on + strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.901 kb on + strand at 35.902 kb on - strand at 35.902 kb on - strand at 35.969 kb on + strand, within BACOVA_03342 at 35.969 kb on + strand, within BACOVA_03342 at 35.971 kb on - strand, within BACOVA_03342 at 36.019 kb on + strand, within BACOVA_03342 at 36.041 kb on - strand, within BACOVA_03342 at 36.055 kb on - strand, within BACOVA_03342 at 36.117 kb on - strand, within BACOVA_03342 at 36.208 kb on - strand, within BACOVA_03342 at 36.224 kb on + strand, within BACOVA_03342 at 36.225 kb on - strand, within BACOVA_03342 at 36.235 kb on - strand, within BACOVA_03342 at 36.319 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.359 kb on + strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.402 kb on + strand, within BACOVA_03342 at 36.495 kb on + strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.594 kb on + strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.597 kb on - strand, within BACOVA_03342 at 36.618 kb on + strand, within BACOVA_03342 at 36.620 kb on + strand, within BACOVA_03342 at 36.649 kb on - strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.651 kb on - strand, within BACOVA_03342 at 36.665 kb on + strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.739 kb on - strand, within BACOVA_03342 at 36.756 kb on - strand, within BACOVA_03342 at 36.844 kb on + strand at 36.845 kb on - strand at 36.847 kb on + strand at 36.847 kb on + strand at 36.888 kb on + strand at 36.889 kb on - strand at 36.902 kb on + strand at 36.913 kb on - strand at 36.920 kb on + strand at 36.952 kb on - strand at 36.952 kb on - strand at 36.954 kb on + strand at 36.954 kb on + strand at 37.000 kb on - strand at 37.013 kb on + strand at 37.014 kb on - strand at 37.045 kb on + strand at 37.056 kb on + strand at 37.064 kb on + strand, within BACOVA_03343 at 37.064 kb on + strand, within BACOVA_03343 at 37.065 kb on - strand, within BACOVA_03343 at 37.065 kb on - strand, within BACOVA_03343 at 37.100 kb on - strand, within BACOVA_03343 at 37.142 kb on - strand, within BACOVA_03343 at 37.161 kb on + strand, within BACOVA_03343 at 37.162 kb on - strand, within BACOVA_03343 at 37.162 kb on - strand, within BACOVA_03343 at 37.164 kb on - strand, within BACOVA_03343 at 37.167 kb on - strand, within BACOVA_03343 at 37.176 kb on + strand, within BACOVA_03343 at 37.177 kb on - strand, within BACOVA_03343 at 37.177 kb on - strand, within BACOVA_03343 at 37.179 kb on + strand, within BACOVA_03343 at 37.198 kb on - strand, within BACOVA_03343 at 37.263 kb on - strand, within BACOVA_03343 at 37.327 kb on + strand, within BACOVA_03343 at 37.329 kb on + strand, within BACOVA_03343 at 37.330 kb on - strand, within BACOVA_03343 at 37.330 kb on - strand, within BACOVA_03343 at 37.449 kb on + strand, within BACOVA_03343 at 37.501 kb on - strand, within BACOVA_03343 at 37.501 kb on - strand, within BACOVA_03343 at 37.516 kb on + strand, within BACOVA_03343 at 37.586 kb on + strand, within BACOVA_03343 at 37.635 kb on - strand, within BACOVA_03343 at 37.647 kb on + strand, within BACOVA_03343 at 37.783 kb on + strand, within BACOVA_03343 at 37.783 kb on + strand, within BACOVA_03343 at 37.813 kb on - strand, within BACOVA_03343 at 37.813 kb on - strand, within BACOVA_03343 at 37.857 kb on + strand, within BACOVA_03343
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/ml (C) remove 34,828 + BACOVA_03341 0.31 -0.4 34,832 - BACOVA_03341 0.31 +0.3 34,852 + BACOVA_03341 0.32 +0.1 34,857 - BACOVA_03341 0.33 +1.1 34,866 + BACOVA_03341 0.33 -1.0 34,866 + BACOVA_03341 0.33 -2.3 34,867 - BACOVA_03341 0.33 -1.3 34,867 - BACOVA_03341 0.33 -0.6 34,923 - BACOVA_03341 0.38 -1.5 34,956 + BACOVA_03341 0.40 -1.2 34,962 - BACOVA_03341 0.41 +0.9 34,995 - BACOVA_03341 0.43 +0.9 35,026 + BACOVA_03341 0.46 +0.1 35,027 - BACOVA_03341 0.46 -0.6 35,048 - BACOVA_03341 0.47 -0.8 35,083 + BACOVA_03341 0.50 -0.8 35,084 - BACOVA_03341 0.50 -0.7 35,133 - BACOVA_03341 0.54 +0.2 35,146 + BACOVA_03341 0.55 +0.4 35,186 - BACOVA_03341 0.58 -1.1 35,186 - BACOVA_03341 0.58 -0.5 35,188 + BACOVA_03341 0.58 -0.5 35,188 + BACOVA_03341 0.58 -1.4 35,192 + BACOVA_03341 0.58 -1.7 35,234 + BACOVA_03341 0.61 -1.7 35,353 - BACOVA_03341 0.70 -0.4 35,385 + BACOVA_03341 0.73 -0.9 35,393 + BACOVA_03341 0.73 -1.7 35,395 + BACOVA_03341 0.73 -0.4 35,474 + BACOVA_03341 0.79 -2.9 35,513 - BACOVA_03341 0.82 -0.9 35,538 - BACOVA_03341 0.84 +0.9 35,538 - BACOVA_03341 0.84 -1.0 35,538 - BACOVA_03341 0.84 +0.1 35,580 + BACOVA_03341 0.87 -0.0 35,597 - BACOVA_03341 0.89 +0.6 35,603 - BACOVA_03341 0.89 -0.9 35,617 + -2.0 35,635 + -1.1 35,654 + -0.3 35,660 - +0.2 35,670 + -1.0 35,671 - -0.3 35,680 + -2.0 35,680 + -1.3 35,681 - +1.5 35,681 - -1.7 35,693 + -2.3 35,693 + -2.7 35,694 - +0.3 35,694 - +0.4 35,694 - -0.3 35,694 - -0.3 35,741 - +0.0 35,770 + +1.7 35,777 + -0.4 35,785 - +0.3 35,808 + -0.3 35,808 + -0.7 35,808 + +0.3 35,815 + -1.5 35,871 + -0.5 35,874 - +0.2 35,897 + -1.4 35,898 - +0.0 35,898 - -1.0 35,898 - -0.7 35,901 + -0.6 35,902 - +0.2 35,902 - +0.1 35,969 + BACOVA_03342 0.14 -0.3 35,969 + BACOVA_03342 0.14 -2.0 35,971 - BACOVA_03342 0.14 +0.4 36,019 + BACOVA_03342 0.18 -2.6 36,041 - BACOVA_03342 0.20 -0.4 36,055 - BACOVA_03342 0.21 +1.6 36,117 - BACOVA_03342 0.27 -0.1 36,208 - BACOVA_03342 0.35 -0.2 36,224 + BACOVA_03342 0.37 +1.3 36,225 - BACOVA_03342 0.37 +0.3 36,235 - BACOVA_03342 0.38 -0.4 36,319 - BACOVA_03342 0.46 -1.7 36,337 - BACOVA_03342 0.47 -0.8 36,337 - BACOVA_03342 0.47 -1.9 36,359 + BACOVA_03342 0.49 -1.3 36,376 - BACOVA_03342 0.51 +1.6 36,376 - BACOVA_03342 0.51 -0.5 36,383 + BACOVA_03342 0.51 -0.3 36,383 + BACOVA_03342 0.51 +0.8 36,402 + BACOVA_03342 0.53 -0.2 36,495 + BACOVA_03342 0.62 -1.9 36,496 - BACOVA_03342 0.62 +0.6 36,496 - BACOVA_03342 0.62 -1.1 36,594 + BACOVA_03342 0.71 -0.7 36,595 - BACOVA_03342 0.71 +0.4 36,595 - BACOVA_03342 0.71 +0.3 36,597 - BACOVA_03342 0.71 -0.2 36,618 + BACOVA_03342 0.73 -2.4 36,620 + BACOVA_03342 0.73 -0.3 36,649 - BACOVA_03342 0.76 +0.4 36,650 + BACOVA_03342 0.76 -0.6 36,650 + BACOVA_03342 0.76 -1.9 36,651 - BACOVA_03342 0.76 -0.2 36,665 + BACOVA_03342 0.77 -1.5 36,666 - BACOVA_03342 0.77 +0.9 36,666 - BACOVA_03342 0.77 +1.4 36,666 - BACOVA_03342 0.77 -0.6 36,739 - BACOVA_03342 0.84 +0.1 36,756 - BACOVA_03342 0.85 -0.6 36,844 + -1.5 36,845 - +0.3 36,847 + -1.6 36,847 + -2.7 36,888 + -1.2 36,889 - -0.3 36,902 + -1.4 36,913 - +0.0 36,920 + -0.9 36,952 - +0.5 36,952 - -0.1 36,954 + -0.3 36,954 + -0.6 37,000 - +0.6 37,013 + +0.4 37,014 - -0.9 37,045 + -0.1 37,056 + -1.5 37,064 + BACOVA_03343 0.10 -1.9 37,064 + BACOVA_03343 0.10 +0.2 37,065 - BACOVA_03343 0.11 -0.8 37,065 - BACOVA_03343 0.11 -1.5 37,100 - BACOVA_03343 0.13 -0.0 37,142 - BACOVA_03343 0.16 -0.8 37,161 + BACOVA_03343 0.17 -0.5 37,162 - BACOVA_03343 0.17 -0.5 37,162 - BACOVA_03343 0.17 +0.1 37,164 - BACOVA_03343 0.17 +0.9 37,167 - BACOVA_03343 0.17 +0.3 37,176 + BACOVA_03343 0.18 -0.9 37,177 - BACOVA_03343 0.18 -1.9 37,177 - BACOVA_03343 0.18 -0.0 37,179 + BACOVA_03343 0.18 -0.4 37,198 - BACOVA_03343 0.19 +0.7 37,263 - BACOVA_03343 0.24 -0.8 37,327 + BACOVA_03343 0.28 -0.6 37,329 + BACOVA_03343 0.28 -0.4 37,330 - BACOVA_03343 0.28 -0.8 37,330 - BACOVA_03343 0.28 +0.4 37,449 + BACOVA_03343 0.36 -0.1 37,501 - BACOVA_03343 0.40 -0.9 37,501 - BACOVA_03343 0.40 +0.5 37,516 + BACOVA_03343 0.41 -2.0 37,586 + BACOVA_03343 0.45 -0.3 37,635 - BACOVA_03343 0.49 -0.5 37,647 + BACOVA_03343 0.49 +0.6 37,783 + BACOVA_03343 0.59 +0.2 37,783 + BACOVA_03343 0.59 +0.3 37,813 - BACOVA_03343 0.61 +2.0 37,813 - BACOVA_03343 0.61 -0.1 37,857 + BACOVA_03343 0.63 +1.0
Or see this region's nucleotide sequence